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PMC:3585731 / 16568-17561 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T7376 711-718 Negative_regulation denotes reduced
T7375 623-638 Phosphorylation denotes phosphorylation
T7374 607-615 Positive_regulation denotes increase
T7373 454-465 Regulation denotes independent
T7372 303-313 Positive_regulation denotes activation
T7371 154-169 Phosphorylation denotes phosphorylation
T7370 132-139 Regulation denotes changes
T7369 109-118 Negative_regulation denotes attenuate
T7365 949-953 Protein denotes RIP1
T7364 908-912 Protein denotes Ask1
T7363 809-813 Protein denotes RIP1
T7362 650-655 Protein denotes c-Jun
T7361 565-569 Protein denotes TNFα
T7360 501-505 Protein denotes TNFα
T7359 408-412 Protein denotes TNFα
T7358 275-279 Protein denotes TNFα
T7357 119-123 Protein denotes TNFα
T7356 16-20 Protein denotes TNFα
R4782 T7362 T7375 themeOf c-Jun,phosphorylation
R4785 T7370 T7369 themeOf changes,attenuate
R4786 T7371 T7370 themeOf phosphorylation,changes
R4787 T7375 T7374 themeOf phosphorylation,increase

2_test

Id Subject Object Predicate Lexical cue
23469174-12655147-90505434 930-932 12655147 denotes 27

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7669 983-992 NN denotes signaling
T7668 971-982 JJ denotes necroptotic
T7667 954-970 JJ denotes kinase-dependent
T7666 949-953 NN denotes RIP1
T7665 944-948 JJ denotes late
T7664 940-943 DT denotes the
T7663 935-939 IN denotes from
T7662 933-934 -COMMA- denotes ,
T7661 932-933 -RRB- denotes ]
T7660 930-932 CD denotes 27
T7659 929-930 -LRB- denotes [
T7658 925-928 NN denotes JNK
T7657 916-924 VB denotes activate
T7656 913-915 TO denotes to
T7655 908-912 NN denotes Ask1
T7654 905-907 IN denotes as
T7580 478-479 -COMMA- denotes ,
T7579 470-478 NN denotes contrast
T7578 467-469 IN denotes In
T7577 447-465 JJ denotes factor-independent
T7576 440-446 NN denotes growth
T7575 437-439 VB denotes is
T7574 430-436 NN denotes Thr308
T7573 426-429 NN denotes Akt
T7572 423-425 TO denotes to
T7571 413-422 NN denotes signaling
T7570 408-412 NN denotes TNFα
T7569 403-407 IN denotes that
T7568 392-402 VB denotes indicating
T7567 390-391 -COMMA- denotes ,
T7566 389-390 -RRB- denotes )
T7565 388-389 NN denotes C
T7564 386-387 -COMMA- denotes ,
T7563 383-386 NN denotes S4B
T7562 378-382 NNP denotes Fig.
T7561 377-378 -LRB- denotes (
T7560 366-376 NN denotes conditions
T7559 361-365 JJ denotes free
T7558 355-360 NN denotes serum
T7557 351-354 CC denotes and
T7556 344-350 JJ denotes normal
T7555 339-343 CC denotes both
T7554 333-338 IN denotes under
T7553 326-332 NN denotes signal
T7552 321-325 NN denotes p308
T7551 317-320 NN denotes Akt
T7550 314-316 IN denotes of
T7549 303-313 NN denotes activation
T7548 298-302 JJ denotes late
T7547 287-297 JJ denotes comparable
T7546 284-286 TO denotes to
T7545 280-283 VB denotes led
T7544 275-279 NN denotes TNFα
T7543 272-274 IN denotes of
T7542 263-271 NN denotes addition
T7541 261-262 -COMMA- denotes ,
T7540 250-261 RB denotes Furthermore
T7539 247-248 -RRB- denotes )
T7538 244-247 NN denotes S4A
T7537 239-243 NN denotes Fig.
T7536 238-239 -LRB- denotes (
T7535 229-237 NN denotes zVAD.fmk
T7534 226-228 TO denotes to
T7533 217-225 NN denotes response
T7532 214-216 IN denotes in
T7531 206-213 NN denotes changes
T7530 200-205 DT denotes these
T7529 189-199 VB denotes preventing
T7528 177-188 RB denotes efficiently
T7527 171-176 IN denotes while
T7526 169-170 -COMMA- denotes ,
T7525 154-169 NN denotes phosphorylation
T7524 150-153 NN denotes JNK
T7523 147-149 CC denotes or
T7522 143-146 NN denotes Akt
T7521 140-142 IN denotes in
T7520 132-139 NN denotes changes
T7519 119-131 JJ denotes TNFα-induced
T7518 109-118 VB denotes attenuate
T7517 105-108 RB denotes not
T7516 101-104 VB denotes did
T7515 90-100 NN denotes inhibitors
T7514 85-89 NN denotes FGFR
T7513 83-84 -COMMA- denotes ,
T7512 82-83 -RRB- denotes )
T7511 80-82 NN denotes 1A
T7510 75-79 NNP denotes Fig.
T7509 74-75 -LRB- denotes (
T7508 66-73 NN denotes factors
T7507 59-65 NN denotes growth
T7506 56-58 IN denotes of
T7505 42-55 RB denotes independently
T7504 30-41 NN denotes necroptosis
T7503 21-29 VB denotes inducing
T7502 16-20 NN denotes TNFα
T7501 11-15 IN denotes with
T7500 0-10 JJ denotes Consistent
T7653 900-904 JJ denotes such
T7652 898-899 -COMMA- denotes ,
T7651 891-898 NN denotes kinases
T7650 882-890 JJ denotes upstream
T7649 871-881 JJ denotes additional
T7648 868-870 IN denotes of
T7647 860-867 NN denotes ability
T7646 856-859 DT denotes the
T7645 848-855 VB denotes reflect
T7644 841-847 RB denotes likely
T7643 835-840 WDT denotes which
T7642 833-834 -COMMA- denotes ,
T7641 826-833 NN denotes changes
T7640 809-825 JJ denotes RIP1-independent
T7639 803-808 JJ denotes early
T7638 793-802 VB denotes separated
T7637 787-792 RB denotes again
T7636 782-786 DT denotes This
T7635 779-780 -RRB- denotes )
T7634 778-779 NN denotes C
T7633 776-777 -COMMA- denotes ,
T7632 773-776 NN denotes S4B
T7631 768-772 NNP denotes Fig.
T7630 767-768 -LRB- denotes (
T7629 761-766 NN denotes point
T7628 756-760 NN denotes time
T7627 753-755 NN denotes hr
T7626 751-752 CD denotes 9
T7625 749-750 -COMMA- denotes ,
T7624 745-749 JJ denotes late
T7623 741-744 DT denotes the
T7622 738-740 IN denotes at
T7621 729-737 NN denotes pJNK/Jun
T7620 726-728 IN denotes of
T7619 719-725 NN denotes levels
T7618 711-718 VB denotes reduced
T7617 708-710 PRP denotes it
T7616 706-707 -COMMA- denotes ,
T7615 699-706 RB denotes however
T7614 697-698 -COMMA- denotes ,
T7613 689-697 NN denotes increase
T7612 683-688 JJ denotes early
T7611 678-682 DT denotes this
T7610 671-677 VB denotes affect
T7609 667-670 RB denotes not
T7608 663-666 VB denotes did
T7607 657-662 NN denotes Nec-1
T7606 650-656 NN denotes c-Jun.
T7605 646-649 CC denotes and
T7604 642-645 NN denotes JNK
T7603 639-641 IN denotes of
T7602 623-638 NN denotes phosphorylation
T7601 619-622 DT denotes the
T7600 616-618 IN denotes in
T7599 607-615 NN denotes increase
T7598 600-606 JJ denotes robust
T7597 596-599 CC denotes and
T7596 590-595 JJ denotes early
T7595 587-589 DT denotes an
T7594 580-586 VB denotes caused
T7593 570-579 NN denotes treatment
T7592 565-569 NN denotes TNFα
T7591 556-563 NN denotes changes
T7590 539-555 JJ denotes zVAD.fmk-induced
T7589 534-538 IN denotes from
T7588 525-533 NN denotes kinetics
T7587 515-524 JJ denotes different
T7586 506-514 VB denotes followed
T7585 501-505 NN denotes TNFα
T7584 498-500 IN denotes by
T7583 494-497 NN denotes JNK
T7582 491-493 IN denotes of
T7581 480-490 NN denotes activation
R4813 T7502 T7501 arg2Of TNFα,with
R4814 T7502 T7503 arg1Of TNFα,inducing
R4815 T7503 T7501 arg3Of inducing,with
R4816 T7503 T7505 arg1Of inducing,independently
R4817 T7504 T7503 arg2Of necroptosis,inducing
R4818 T7505 T7506 arg1Of independently,of
R4819 T7508 T7506 arg2Of factors,of
R4820 T7508 T7507 arg1Of factors,growth
R4821 T7508 T7509 arg1Of factors,(
R4822 T7511 T7509 arg2Of 1A,(
R4823 T7511 T7510 arg1Of 1A,Fig.
R4824 T7512 T7509 arg3Of ),(
R4825 T7515 T7500 arg1Of inhibitors,Consistent
R4826 T7515 T7514 arg1Of inhibitors,FGFR
R4827 T7515 T7516 arg1Of inhibitors,did
R4828 T7515 T7518 arg1Of inhibitors,attenuate
R4829 T7515 T7529 arg1Of inhibitors,preventing
R4830 T7518 T7500 modOf attenuate,Consistent
R4831 T7518 T7501 arg1Of attenuate,with
R4832 T7518 T7513 arg1Of attenuate,","
R4833 T7518 T7516 arg2Of attenuate,did
R4834 T7518 T7517 arg1Of attenuate,not
R4835 T7518 T7526 arg1Of attenuate,","
R4836 T7518 T7527 arg1Of attenuate,while
R4837 T7520 T7518 arg2Of changes,attenuate
R4838 T7520 T7519 arg1Of changes,TNFα-induced
R4839 T7520 T7521 arg1Of changes,in
R4840 T7522 T7523 arg1Of Akt,or
R4841 T7524 T7523 arg2Of JNK,or
R4842 T7525 T7521 arg2Of phosphorylation,in
R4843 T7525 T7522 arg1Of phosphorylation,Akt
R4844 T7525 T7524 arg1Of phosphorylation,JNK
R4845 T7529 T7527 arg2Of preventing,while
R4846 T7529 T7528 arg1Of preventing,efficiently
R4847 T7529 T7532 arg1Of preventing,in
R4848 T7531 T7529 arg2Of changes,preventing
R4849 T7531 T7530 arg1Of changes,these
R4850 T7533 T7532 arg2Of response,in
R4851 T7533 T7534 arg1Of response,to
R4852 T7535 T7534 arg2Of zVAD.fmk,to
R4853 T7535 T7536 arg1Of zVAD.fmk,(
R4854 T7538 T7536 arg2Of S4A,(
R4855 T7538 T7537 arg1Of S4A,Fig.
R4856 T7539 T7536 arg3Of ),(
R4857 T7542 T7543 arg1Of addition,of
R4858 T7542 T7545 arg1Of addition,led
R4859 T7544 T7543 arg2Of TNFα,of
R4860 T7545 T7540 arg1Of led,Furthermore
R4861 T7545 T7541 arg1Of led,","
R4862 T7545 T7546 arg1Of led,to
R4863 T7545 T7567 arg1Of led,","
R4864 T7545 T7568 modOf led,indicating
R4865 T7548 T7547 arg1Of late,comparable
R4866 T7549 T7546 arg2Of activation,to
R4867 T7549 T7548 arg1Of activation,late
R4868 T7549 T7550 arg1Of activation,of
R4869 T7549 T7554 arg1Of activation,under
R4870 T7553 T7550 arg2Of signal,of
R4871 T7553 T7551 arg1Of signal,Akt
R4872 T7553 T7552 arg1Of signal,p308
R4873 T7556 T7557 arg1Of normal,and
R4874 T7559 T7557 arg2Of free,and
R4875 T7559 T7558 arg1Of free,serum
R4876 T7560 T7554 arg2Of conditions,under
R4877 T7560 T7555 arg1Of conditions,both
R4878 T7560 T7556 arg1Of conditions,normal
R4879 T7560 T7559 arg1Of conditions,free
R4880 T7560 T7561 arg1Of conditions,(
R4881 T7563 T7561 arg2Of S4B,(
R4882 T7563 T7562 arg1Of S4B,Fig.
R4883 T7563 T7564 arg1Of S4B,","
R4884 T7565 T7564 arg2Of C,","
R4885 T7566 T7561 arg3Of ),(
R4886 T7571 T7570 arg1Of signaling,TNFα
R4887 T7571 T7572 arg1Of signaling,to
R4888 T7571 T7575 arg1Of signaling,is
R4889 T7571 T7577 arg1Of signaling,factor-independent
R4890 T7574 T7572 arg2Of Thr308,to
R4891 T7574 T7573 arg1Of Thr308,Akt
R4892 T7575 T7568 arg2Of is,indicating
R4893 T7575 T7569 arg1Of is,that
R4894 T7577 T7575 arg2Of factor-independent,is
R4895 T7577 T7576 arg1Of factor-independent,growth
R4896 T7579 T7578 arg2Of contrast,In
R4897 T7581 T7582 arg1Of activation,of
R4898 T7581 T7584 arg1Of activation,by
R4899 T7581 T7586 arg1Of activation,followed
R4900 T7583 T7582 arg2Of JNK,of
R4901 T7585 T7584 arg2Of TNFα,by
R4902 T7586 T7578 arg1Of followed,In
R4903 T7586 T7580 arg1Of followed,","
R4904 T7588 T7586 arg2Of kinetics,followed
R4905 T7588 T7587 arg1Of kinetics,different
R4906 T7588 T7589 arg1Of kinetics,from
R4907 T7591 T7589 arg2Of changes,from
R4908 T7591 T7590 arg1Of changes,zVAD.fmk-induced
R4909 T7593 T7592 arg1Of treatment,TNFα
R4910 T7593 T7594 arg1Of treatment,caused
R4911 T7594 T7605 arg1Of caused,and
R4912 T7596 T7597 arg1Of early,and
R4913 T7598 T7597 arg2Of robust,and
R4914 T7599 T7594 arg2Of increase,caused
R4915 T7599 T7595 arg1Of increase,an
R4916 T7599 T7596 arg1Of increase,early
R4917 T7599 T7598 arg1Of increase,robust
R4918 T7599 T7600 arg1Of increase,in
R4919 T7602 T7600 arg2Of phosphorylation,in
R4920 T7602 T7601 arg1Of phosphorylation,the
R4921 T7602 T7603 arg1Of phosphorylation,of
R4922 T7604 T7603 arg2Of JNK,of
R4923 T7607 T7606 arg1Of Nec-1,c-Jun.
R4924 T7607 T7608 arg1Of Nec-1,did
R4925 T7607 T7610 arg1Of Nec-1,affect
R4926 T7610 T7608 arg2Of affect,did
R4927 T7610 T7609 arg1Of affect,not
R4928 T7610 T7614 arg1Of affect,","
R4929 T7610 T7615 arg1Of affect,however
R4930 T7610 T7616 arg1Of affect,","
R4931 T7613 T7610 arg2Of increase,affect
R4932 T7613 T7611 arg1Of increase,this
R4933 T7613 T7612 arg1Of increase,early
R4934 T7616 T7605 arg2Of ",",and
R4935 T7617 T7618 arg1Of it,reduced
R4936 T7618 T7616 arg2Of reduced,","
R4937 T7619 T7618 arg2Of levels,reduced
R4938 T7619 T7620 arg1Of levels,of
R4939 T7621 T7620 arg2Of pJNK/Jun,of
R4940 T7621 T7622 arg1Of pJNK/Jun,at
R4941 T7624 T7625 arg1Of late,","
R4942 T7626 T7625 arg2Of 9,","
R4943 T7629 T7622 arg2Of point,at
R4944 T7629 T7623 arg1Of point,the
R4945 T7629 T7624 arg1Of point,late
R4946 T7629 T7626 arg1Of point,9
R4947 T7629 T7627 arg1Of point,hr
R4948 T7629 T7628 arg1Of point,time
R4949 T7629 T7630 arg1Of point,(
R4950 T7632 T7630 arg2Of S4B,(
R4951 T7632 T7631 arg1Of S4B,Fig.
R4952 T7632 T7633 arg1Of S4B,","
R4953 T7634 T7633 arg2Of C,","
R4954 T7635 T7630 arg3Of ),(
R4955 T7641 T7636 arg1Of changes,This
R4956 T7641 T7637 arg1Of changes,again
R4957 T7641 T7638 arg2Of changes,separated
R4958 T7641 T7639 arg1Of changes,early
R4959 T7641 T7640 arg1Of changes,RIP1-independent
R4960 T7641 T7642 arg1Of changes,","
R4961 T7641 T7643 arg1Of changes,which
R4962 T7641 T7645 arg1Of changes,reflect
R4963 T7645 T7644 arg1Of reflect,likely
R4964 T7647 T7645 arg2Of ability,reflect
R4965 T7647 T7646 arg1Of ability,the
R4966 T7647 T7648 arg1Of ability,of
R4967 T7651 T7648 arg2Of kinases,of
R4968 T7651 T7649 arg1Of kinases,additional
R4969 T7651 T7650 arg1Of kinases,upstream
R4970 T7651 T7652 arg1Of kinases,","
R4971 T7651 T7654 arg1Of kinases,as
R4972 T7654 T7653 arg1Of as,such
R4973 T7655 T7654 arg2Of Ask1,as
R4974 T7655 T7656 modOf Ask1,to
R4975 T7657 T7656 arg1Of activate,to
R4976 T7657 T7662 arg1Of activate,","
R4977 T7657 T7663 arg1Of activate,from
R4978 T7658 T7657 arg2Of JNK,activate
R4979 T7658 T7659 arg1Of JNK,[
R4980 T7660 T7659 arg2Of 27,[
R4981 T7661 T7659 arg3Of ],[
R4982 T7669 T7663 arg2Of signaling,from
R4983 T7669 T7664 arg1Of signaling,the
R4984 T7669 T7665 arg1Of signaling,late
R4985 T7669 T7666 arg1Of signaling,RIP1
R4986 T7669 T7667 arg1Of signaling,kinase-dependent
R4987 T7669 T7668 arg1Of signaling,necroptotic

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T7430 607-615 Antecedent denotes increase
T7429 678-697 Anaphor denotes this early increase
R4799 T7429 T7430 boundBy this early increase,increase

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T7441 949-953 Protein denotes RIP1
T7440 908-912 Protein denotes Ask1
T7439 809-813 Protein denotes RIP1
T7438 650-655 Protein denotes c-Jun
T7437 565-569 Protein denotes TNFα
T7436 501-505 Protein denotes TNFα
T7435 408-412 Protein denotes TNFα
T7434 275-279 Protein denotes TNFα
T7433 119-123 Protein denotes TNFα
T7432 16-20 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T7705 949-953 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T7704 809-813 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T7703 650-655 http://www.uniprot.org/uniprot/P05412 denotes c-Jun
T7702 426-429 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T7701 317-320 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T7700 143-146 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T7698 426-429 http://www.uniprot.org/uniprot/P31751 denotes Akt
T7697 317-320 http://www.uniprot.org/uniprot/P31751 denotes Akt
T7696 143-146 http://www.uniprot.org/uniprot/P31751 denotes Akt
T7694 426-429 http://www.uniprot.org/uniprot/P31749 denotes Akt
T7693 317-320 http://www.uniprot.org/uniprot/P31749 denotes Akt
T7692 143-146 http://www.uniprot.org/uniprot/P31749 denotes Akt
T7690 565-569 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T7689 501-505 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T7688 408-412 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T7687 275-279 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T7686 119-123 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T7685 16-20 http://www.uniprot.org/uniprot/P01375 denotes TNFα

UBERON-AE

Id Subject Object Predicate Lexical cue
T7408 355-360 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum

GO-BP

Id Subject Object Predicate Lexical cue
T7459 983-992 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T7458 413-422 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T7457 326-332 http://purl.obolibrary.org/obo/GO_0023052 denotes signal
T7456 925-928 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T7455 642-645 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T7454 494-497 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T7453 150-153 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T7452 85-89 http://purl.obolibrary.org/obo/GO_0005007 denotes FGFR
T7451 440-446 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T7450 59-65 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T7448 30-41 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T7446 30-41 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T7444 623-638 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T7443 154-169 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-MF

Id Subject Object Predicate Lexical cue
T7464 925-928 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T7463 642-645 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T7462 494-497 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T7461 150-153 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T7460 85-89 http://purl.obolibrary.org/obo/GO_0005007 denotes FGFR

sentences

Id Subject Object Predicate Lexical cue
T7414 782-993 Sentence denotes This again separated early RIP1-independent changes, which likely reflect the ability of additional upstream kinases, such as Ask1 to activate JNK [27], from the late RIP1 kinase-dependent necroptotic signaling.
T7413 565-781 Sentence denotes TNFα treatment caused an early and robust increase in the phosphorylation of JNK and c-Jun. Nec-1 did not affect this early increase, however, it reduced levels of pJNK/Jun at the late, 9 hr time point (Fig. S4B, C).
T7412 467-564 Sentence denotes In contrast, activation of JNK by TNFα followed different kinetics from zVAD.fmk-induced changes.
T7411 250-466 Sentence denotes Furthermore, addition of TNFα led to comparable late activation of Akt p308 signal under both normal and serum free conditions (Fig. S4B, C), indicating that TNFα signaling to Akt Thr308 is growth factor-independent.
T7410 0-249 Sentence denotes Consistent with TNFα inducing necroptosis independently of growth factors (Fig. 1A), FGFR inhibitors did not attenuate TNFα-induced changes in Akt or JNK phosphorylation, while efficiently preventing these changes in response to zVAD.fmk (Fig. S4A).
T103 0-249 Sentence denotes Consistent with TNFα inducing necroptosis independently of growth factors (Fig. 1A), FGFR inhibitors did not attenuate TNFα-induced changes in Akt or JNK phosphorylation, while efficiently preventing these changes in response to zVAD.fmk (Fig. S4A).
T104 250-466 Sentence denotes Furthermore, addition of TNFα led to comparable late activation of Akt p308 signal under both normal and serum free conditions (Fig. S4B, C), indicating that TNFα signaling to Akt Thr308 is growth factor-independent.
T105 467-564 Sentence denotes In contrast, activation of JNK by TNFα followed different kinetics from zVAD.fmk-induced changes.
T106 565-656 Sentence denotes TNFα treatment caused an early and robust increase in the phosphorylation of JNK and c-Jun.
T107 657-781 Sentence denotes Nec-1 did not affect this early increase, however, it reduced levels of pJNK/Jun at the late, 9 hr time point (Fig. S4B, C).
T108 782-993 Sentence denotes This again separated early RIP1-independent changes, which likely reflect the ability of additional upstream kinases, such as Ask1 to activate JNK [27], from the late RIP1 kinase-dependent necroptotic signaling.

simple1

Id Subject Object Predicate Lexical cue
T7475 949-953 Protein denotes RIP1
T7474 908-912 Protein denotes Ask1
T7473 809-813 Protein denotes RIP1
T7472 650-655 Protein denotes c-Jun
T7471 565-569 Protein denotes TNFα
T7470 501-505 Protein denotes TNFα
T7469 408-412 Protein denotes TNFα
T7468 275-279 Protein denotes TNFα
T7467 119-123 Protein denotes TNFα
T7466 16-20 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T7681 124-131 Positive_regulation denotes induced
T7680 809-813 Protein denotes RIP1
T7679 949-953 Protein denotes RIP1
T7678 908-912 Protein denotes Ask1
T7677 650-655 Protein denotes c-Jun
T7676 565-569 Protein denotes TNFα
T7675 501-505 Protein denotes TNFα
T7674 408-412 Protein denotes TNFα
T7673 275-279 Protein denotes TNFα
T7672 119-123 Protein denotes TNFα
T7671 16-20 Protein denotes TNFα
T7683 607-615 Positive_regulation denotes increase
T7682 623-638 Phosphorylation denotes phosphorylation
R4988 T7672 T7681 themeOf TNFα,induced
R4989 T7677 T7682 themeOf c-Jun,phosphorylation
R4990 T7682 T7683 themeOf phosphorylation,increase

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T7942 607-615 Positive_regulation denotes increase
T7941 623-638 Phosphorylation denotes phosphorylation
T7940 124-131 Positive_regulation denotes induced
T7939 809-813 Protein denotes RIP1
T7938 949-953 Protein denotes RIP1
T7937 908-912 Protein denotes Ask1
T7936 650-655 Protein denotes c-Jun
T7935 565-569 Protein denotes TNFα
T7934 501-505 Protein denotes TNFα
T7933 408-412 Protein denotes TNFα
T7932 275-279 Protein denotes TNFα
T7931 119-123 Protein denotes TNFα
T7930 16-20 Protein denotes TNFα
R5193 T7931 T7940 themeOf TNFα,induced
R5194 T7936 T7941 themeOf c-Jun,phosphorylation
R5195 T7941 T7942 themeOf phosphorylation,increase

DLUT931

Id Subject Object Predicate Lexical cue
T7722 607-615 Positive_regulation denotes increase
T7721 623-638 Phosphorylation denotes phosphorylation
T7720 480-490 Positive_regulation denotes activation
T7719 21-29 Positive_regulation denotes inducing
T7718 124-131 Positive_regulation denotes induced
T7717 30-41 Negative_regulation denotes necroptosis
T7716 809-813 Protein denotes RIP1
T7715 949-953 Protein denotes RIP1
T7714 908-912 Protein denotes Ask1
T7713 650-655 Protein denotes c-Jun
T7712 565-569 Protein denotes TNFα
T7711 501-505 Protein denotes TNFα
T7710 408-412 Protein denotes TNFα
T7709 275-279 Protein denotes TNFα
T7708 119-123 Protein denotes TNFα
T7707 16-20 Protein denotes TNFα
R4991 T7707 T7717 themeOf TNFα,necroptosis
R4992 T7708 T7718 themeOf TNFα,induced
R4993 T7711 T7720 themeOf TNFα,activation
R4994 T7713 T7721 themeOf c-Jun,phosphorylation
R4995 T7717 T7719 themeOf necroptosis,inducing
R4996 T7719 T7717 themeOf inducing,necroptosis
R4997 T7721 T7722 themeOf phosphorylation,increase

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue Negation
T8077 565-586 Regulation denotes TNFα treatment caused
T8076 408-465 Regulation denotes TNFα signaling to Akt Thr308 is growth factor-independent true
T8074 949-992 Positive_regulation denotes RIP1 kinase-dependent necroptotic signaling
T8073 85-169 Negative_regulation denotes FGFR inhibitors did not attenuate TNFα-induced changes in Akt or JNK phosphorylation true
T8072 949-992 Regulation denotes RIP1 kinase-dependent necroptotic signaling
T8070 913-928 Positive_regulation denotes to activate JNK
T8069 480-505 Positive_regulation denotes activation of JNK by TNFα
T8068 150-169 Phosphorylation denotes JNK phosphorylation
T8067 303-320 Positive_regulation denotes activation of Akt
T8066 616-645 Phosphorylation denotes in the phosphorylation of JNK
T8065 408-422 Positive_regulation denotes TNFα signaling
T8063 600-645 Positive_regulation denotes robust increase in the phosphorylation of JNK
T8062 440-465 Protein denotes growth factor-independent
T8060 809-825 Protein denotes RIP1-independent
T8059 498-505 Protein denotes by TNFα
T8058 868-928 Protein denotes of additional upstream kinases, such as Ask1 to activate JNK
T8057 565-569 Protein denotes TNFα
T8056 426-429 Protein denotes Akt
T8055 321-325 Entity denotes p308
T8054 891-907 Protein denotes kinases, such as
T8053 150-153 Protein denotes JNK
T8052 925-928 Protein denotes JNK
T8051 949-953 Protein denotes RIP1
T8050 119-131 Protein denotes TNFα-induced
T8049 314-320 Protein denotes of Akt
T8048 729-737 Entity denotes pJNK/Jun
T8047 491-497 Protein denotes of JNK
T8046 16-19 Protein denotes TNF
T8044 954-970 Protein denotes kinase-dependent
T8043 539-547 Entity denotes zVAD.fmk
T8041 378-381 Protein denotes Fig
T8040 730-737 Protein denotes JNK/Jun
T8039 730-737 Protein denotes JNK/Jun
T8038 639-645 Protein denotes of JNK
T8037 229-248 Entity denotes zVAD.fmk (Fig. S4A)
T8036 408-412 Protein denotes TNFα
T8035 272-279 Protein denotes of TNFα
T8034 657-662 Protein denotes Nec-1
T8033 85-100 Entity denotes FGFR inhibitors
T8031 426-436 Entity denotes Akt Thr308
T8030 734-737 Protein denotes Jun
T8029 143-146 Protein denotes Akt
R5234 T8033 T8073 causeOf FGFR inhibitors,FGFR inhibitors did not attenuate TNFα-induced changes in Akt or JNK phosphorylation
R5235 T8036 T8065 causeOf TNFα,TNFα signaling
R5236 T8038 T8066 themeOf of JNK,in the phosphorylation of JNK
R5238 T8044 T8072 causeOf kinase-dependent,RIP1 kinase-dependent necroptotic signaling
R5239 T8047 T8069 themeOf of JNK,activation of JNK by TNFα
R5240 T8049 T8067 themeOf of Akt,activation of Akt
R5241 T8051 T8074 causeOf RIP1,RIP1 kinase-dependent necroptotic signaling
R5242 T8052 T8070 themeOf JNK,to activate JNK
R5243 T8053 T8068 themeOf JNK,JNK phosphorylation
R5244 T8057 T8077 themeOf TNFα,TNFα treatment caused
R5245 T8059 T8069 causeOf by TNFα,activation of JNK by TNFα
R5247 T8062 T8076 causeOf growth factor-independent,TNFα signaling to Akt Thr308 is growth factor-independent
R5248 T8065 T8076 themeOf TNFα signaling,TNFα signaling to Akt Thr308 is growth factor-independent
R5249 T8066 T8063 themeOf in the phosphorylation of JNK,robust increase in the phosphorylation of JNK
R5250 T8074 T8072 themeOf RIP1 kinase-dependent necroptotic signaling,RIP1 kinase-dependent necroptotic signaling

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7869 689-697 NN denotes increase
T7868 683-688 JJ denotes early
T7867 678-682 DT denotes this
T7866 671-677 VB denotes affect
T7865 667-670 RB denotes not
T7864 663-666 VBD denotes did
T7863 657-662 NN denotes Nec-1
T7862 655-656 . denotes .
T7861 650-655 NNP denotes c-Jun
T7860 646-649 CC denotes and
T7859 642-645 NNP denotes JNK
T7858 639-641 IN denotes of
T7857 623-638 NN denotes phosphorylation
T7856 619-622 DT denotes the
T7855 616-618 IN denotes in
T7854 607-615 NN denotes increase
T7853 600-606 JJ denotes robust
T7852 596-599 CC denotes and
T7851 590-595 JJ denotes early
T7850 587-589 DT denotes an
T7802 383-386 CD denotes S4B
T7801 381-382 . denotes .
T7800 378-381 NNP denotes Fig
T7799 377-378 -LRB- denotes (
T7798 366-376 NNS denotes conditions
T7797 361-365 JJ denotes free
T7796 355-360 JJ denotes serum
T7795 351-354 CC denotes and
T7794 344-350 JJ denotes normal
T7793 339-343 DT denotes both
T7792 333-338 IN denotes under
T7791 326-332 NN denotes signal
T7790 321-325 CD denotes p308
T7789 317-320 NNP denotes Akt
T7788 314-316 IN denotes of
T7787 303-313 NN denotes activation
T7786 298-302 JJ denotes late
T7785 287-297 JJ denotes comparable
T7784 284-286 TO denotes to
T7783 280-283 VBD denotes led
T7782 275-279 NNP denotes TNFα
T7781 272-274 IN denotes of
T7780 263-271 NN denotes addition
T7779 261-262 , denotes ,
T7778 250-261 RB denotes Furthermore
T7777 248-249 . denotes .
T7776 247-248 -RRB- denotes )
T7775 244-247 CD denotes S4A
T7774 242-243 . denotes .
T7773 239-242 NNP denotes Fig
T7772 238-239 -LRB- denotes (
T7771 229-237 NNP denotes zVAD.fmk
T7770 226-228 TO denotes to
T7769 217-225 NN denotes response
T7768 214-216 IN denotes in
T7767 206-213 NNS denotes changes
T7766 200-205 DT denotes these
T7765 189-199 VBG denotes preventing
T7764 177-188 RB denotes efficiently
T7763 171-176 IN denotes while
T7762 169-170 , denotes ,
T7761 154-169 NN denotes phosphorylation
T7760 150-153 NNP denotes JNK
T7759 147-149 CC denotes or
T7758 143-146 NNP denotes Akt
T7757 140-142 IN denotes in
T7756 132-139 NNS denotes changes
T7755 119-131 JJ denotes TNFα-induced
T7754 109-118 VB denotes attenuate
T7753 105-108 RB denotes not
T7752 101-104 VBD denotes did
T7751 90-100 NNS denotes inhibitors
T7750 85-89 NNP denotes FGFR
T7749 83-84 , denotes ,
T7748 82-83 -RRB- denotes )
T7747 80-82 NNP denotes 1A
T7746 75-79 NNP denotes Fig.
T7745 74-75 -LRB- denotes (
T7744 66-73 NNS denotes factors
T7743 59-65 NN denotes growth
T7742 56-58 IN denotes of
T7741 42-55 RB denotes independently
T7740 30-41 NN denotes necroptosis
T7739 21-29 VBG denotes inducing
T7738 16-20 NNP denotes TNFα
T7737 11-15 IN denotes with
T7736 0-10 NNP denotes Consistent
T7928 992-993 . denotes .
T7927 983-992 VBG denotes signaling
T7926 971-982 JJ denotes necroptotic
T7925 954-970 JJ denotes kinase-dependent
T7924 949-953 CD denotes RIP1
T7923 944-948 JJ denotes late
T7922 940-943 DT denotes the
T7921 935-939 IN denotes from
T7920 933-934 , denotes ,
T7919 932-933 NNP denotes ]
T7918 930-932 CD denotes 27
T7917 929-930 NNP denotes [
T7916 925-928 NNP denotes JNK
T7915 916-924 VB denotes activate
T7914 913-915 TO denotes to
T7913 908-912 JJ denotes Ask1
T7912 905-907 IN denotes as
T7911 900-904 JJ denotes such
T7910 898-899 , denotes ,
T7909 891-898 NNS denotes kinases
T7908 882-890 JJ denotes upstream
T7907 871-881 JJ denotes additional
T7906 868-870 IN denotes of
T7905 860-867 NN denotes ability
T7904 856-859 DT denotes the
T7903 848-855 VBP denotes reflect
T7902 841-847 JJ denotes likely
T7901 835-840 WDT denotes which
T7900 833-834 , denotes ,
T7899 826-833 NNS denotes changes
T7898 809-825 JJ denotes RIP1-independent
T7897 803-808 RB denotes early
T7896 793-802 VBN denotes separated
T7895 787-792 RB denotes again
T7894 782-786 DT denotes This
T7893 780-781 . denotes .
T7892 779-780 -RRB- denotes )
T7891 778-779 NNP denotes C
T7890 776-777 , denotes ,
T7889 773-776 CD denotes S4B
T7888 771-772 . denotes .
T7887 768-771 NNP denotes Fig
T7886 767-768 -LRB- denotes (
T7885 761-766 NN denotes point
T7884 756-760 NN denotes time
T7883 753-755 NN denotes hr
T7882 751-752 CD denotes 9
T7881 749-750 , denotes ,
T7880 745-749 JJ denotes late
T7879 741-744 DT denotes the
T7878 738-740 IN denotes at
T7877 729-737 NNP denotes pJNK/Jun
T7876 726-728 IN denotes of
T7875 719-725 NNS denotes levels
T7874 711-718 VBD denotes reduced
T7873 708-710 PRP denotes it
T7872 706-707 , denotes ,
T7871 699-706 RB denotes however
T7870 697-698 , denotes ,
T7849 580-586 VBD denotes caused
T7848 570-579 NN denotes treatment
T7847 565-569 NNP denotes TNFα
T7846 563-564 . denotes .
T7845 556-563 NNS denotes changes
T7844 539-555 JJ denotes zVAD.fmk-induced
T7843 534-538 IN denotes from
T7842 525-533 NNS denotes kinetics
T7841 515-524 JJ denotes different
T7840 506-514 VBD denotes followed
T7839 501-505 NNP denotes TNFα
T7838 498-500 IN denotes by
T7837 494-497 NNP denotes JNK
T7836 491-493 IN denotes of
T7835 480-490 NN denotes activation
T7834 478-479 , denotes ,
T7833 470-478 NN denotes contrast
T7832 467-469 IN denotes In
T7831 465-466 . denotes .
T7830 447-465 NN denotes factor-independent
T7829 440-446 NN denotes growth
T7828 437-439 VBZ denotes is
T7827 430-436 NNP denotes Thr308
T7826 426-429 NNP denotes Akt
T7825 423-425 TO denotes to
T7824 413-422 VBG denotes signaling
T7823 408-412 NNP denotes TNFα
T7822 403-407 IN denotes that
T7821 392-402 VBG denotes indicating
T7820 390-391 , denotes ,
T7819 389-390 -RRB- denotes )
T7818 388-389 NNP denotes C
T7817 386-387 , denotes ,
R5012 T7737 T7736 prep with,Consistent
R5013 T7738 T7739 nsubj TNFα,inducing
R5014 T7739 T7754 advcl inducing,attenuate
R5015 T7740 T7739 dobj necroptosis,inducing
R5016 T7741 T7739 advmod independently,inducing
R5017 T7742 T7741 prep of,independently
R5018 T7743 T7744 compound growth,factors
R5019 T7744 T7742 pobj factors,of
R5020 T7745 T7747 punct (,1A
R5021 T7746 T7747 compound Fig.,1A
R5022 T7747 T7739 parataxis 1A,inducing
R5023 T7748 T7747 punct ),1A
R5024 T7749 T7754 punct ",",attenuate
R5025 T7750 T7751 compound FGFR,inhibitors
R5026 T7751 T7754 nsubj inhibitors,attenuate
R5027 T7752 T7754 aux did,attenuate
R5028 T7753 T7754 neg not,attenuate
R5029 T7754 T7754 ROOT attenuate,attenuate
R5030 T7755 T7756 amod TNFα-induced,changes
R5031 T7756 T7754 dobj changes,attenuate
R5032 T7757 T7756 prep in,changes
R5033 T7758 T7757 pobj Akt,in
R5034 T7759 T7758 cc or,Akt
R5035 T7760 T7761 compound JNK,phosphorylation
R5036 T7761 T7754 oprd phosphorylation,attenuate
R5037 T7762 T7754 punct ",",attenuate
R5038 T7763 T7765 mark while,preventing
R5039 T7764 T7765 advmod efficiently,preventing
R5040 T7765 T7754 advcl preventing,attenuate
R5041 T7766 T7767 det these,changes
R5042 T7767 T7765 dobj changes,preventing
R5043 T7768 T7765 prep in,preventing
R5044 T7769 T7768 pobj response,in
R5045 T7770 T7769 prep to,response
R5046 T7771 T7770 pobj zVAD.fmk,to
R5047 T7772 T7773 punct (,Fig
R5048 T7773 T7771 appos Fig,zVAD.fmk
R5049 T7774 T7775 punct .,S4A
R5050 T7775 T7754 dep S4A,attenuate
R5051 T7776 T7775 punct ),S4A
R5052 T7777 T7754 punct .,attenuate
R5053 T7778 T7783 advmod Furthermore,led
R5054 T7779 T7783 punct ",",led
R5055 T7780 T7783 nsubj addition,led
R5056 T7781 T7780 prep of,addition
R5057 T7782 T7781 pobj TNFα,of
R5058 T7783 T7783 ROOT led,led
R5059 T7784 T7783 prep to,led
R5060 T7785 T7787 amod comparable,activation
R5061 T7786 T7787 amod late,activation
R5062 T7787 T7784 pobj activation,to
R5063 T7788 T7787 prep of,activation
R5064 T7789 T7791 nsubj Akt,signal
R5065 T7790 T7791 nummod p308,signal
R5066 T7791 T7783 dobj signal,led
R5067 T7792 T7783 prep under,led
R5068 T7793 T7794 preconj both,normal
R5069 T7794 T7798 amod normal,conditions
R5070 T7795 T7794 cc and,normal
R5071 T7796 T7794 conj serum,normal
R5072 T7797 T7798 amod free,conditions
R5073 T7798 T7792 pobj conditions,under
R5074 T7799 T7783 punct (,led
R5075 T7800 T7783 dobj Fig,led
R5076 T7801 T7800 punct .,Fig
R5077 T7802 T7828 nsubj S4B,is
R5081 T7817 T7818 punct ",",C
R5082 T7818 T7802 appos C,S4B
R5083 T7819 T7802 punct ),S4B
R5084 T7820 T7802 punct ",",S4B
R5085 T7821 T7802 acl indicating,S4B
R5086 T7822 T7824 mark that,signaling
R5087 T7823 T7824 nsubj TNFα,signaling
R5088 T7824 T7821 ccomp signaling,indicating
R5089 T7825 T7824 prep to,signaling
R5090 T7826 T7827 compound Akt,Thr308
R5091 T7827 T7828 nsubj Thr308,is
R5092 T7828 T7828 ROOT is,is
R5093 T7829 T7830 compound growth,factor-independent
R5094 T7830 T7828 attr factor-independent,is
R5095 T7831 T7828 punct .,is
R5096 T7832 T7840 prep In,followed
R5097 T7833 T7832 pobj contrast,In
R5098 T7834 T7840 punct ",",followed
R5099 T7835 T7840 nsubj activation,followed
R5100 T7836 T7835 prep of,activation
R5101 T7837 T7836 pobj JNK,of
R5102 T7838 T7835 prep by,activation
R5103 T7839 T7838 pobj TNFα,by
R5104 T7840 T7840 ROOT followed,followed
R5105 T7841 T7842 amod different,kinetics
R5106 T7842 T7840 dobj kinetics,followed
R5107 T7843 T7842 prep from,kinetics
R5108 T7844 T7845 amod zVAD.fmk-induced,changes
R5109 T7845 T7843 pobj changes,from
R5110 T7846 T7840 punct .,followed
R5111 T7847 T7848 compound TNFα,treatment
R5112 T7848 T7849 nsubj treatment,caused
R5113 T7849 T7849 ROOT caused,caused
R5114 T7850 T7854 det an,increase
R5115 T7851 T7854 amod early,increase
R5116 T7852 T7851 cc and,early
R5117 T7853 T7851 conj robust,early
R5118 T7854 T7849 dobj increase,caused
R5119 T7855 T7854 prep in,increase
R5120 T7856 T7857 det the,phosphorylation
R5121 T7857 T7855 pobj phosphorylation,in
R5122 T7858 T7857 prep of,phosphorylation
R5123 T7859 T7858 pobj JNK,of
R5124 T7860 T7859 cc and,JNK
R5125 T7861 T7859 conj c-Jun,JNK
R5126 T7862 T7849 punct .,caused
R5127 T7863 T7866 nsubj Nec-1,affect
R5128 T7864 T7866 aux did,affect
R5129 T7865 T7866 neg not,affect
R5130 T7866 T7874 ccomp affect,reduced
R5131 T7867 T7869 det this,increase
R5132 T7868 T7869 amod early,increase
R5133 T7869 T7866 dobj increase,affect
R5134 T7870 T7874 punct ",",reduced
R5135 T7871 T7874 advmod however,reduced
R5136 T7872 T7874 punct ",",reduced
R5137 T7873 T7874 nsubj it,reduced
R5138 T7874 T7874 ROOT reduced,reduced
R5139 T7875 T7874 dobj levels,reduced
R5140 T7876 T7875 prep of,levels
R5141 T7877 T7876 pobj pJNK/Jun,of
R5142 T7878 T7874 prep at,reduced
R5143 T7879 T7885 det the,point
R5144 T7880 T7885 amod late,point
R5145 T7881 T7885 punct ",",point
R5146 T7882 T7885 nummod 9,point
R5147 T7883 T7884 amod hr,time
R5148 T7884 T7885 compound time,point
R5149 T7885 T7878 pobj point,at
R5150 T7886 T7887 punct (,Fig
R5151 T7887 T7885 appos Fig,point
R5152 T7888 T7874 punct .,reduced
R5153 T7889 T7889 ROOT S4B,S4B
R5154 T7890 T7891 punct ",",C
R5155 T7891 T7889 appos C,S4B
R5156 T7892 T7889 punct ),S4B
R5157 T7893 T7889 punct .,S4B
R5158 T7894 T7896 nsubj This,separated
R5159 T7895 T7896 advmod again,separated
R5160 T7896 T7896 ROOT separated,separated
R5161 T7897 T7899 amod early,changes
R5162 T7898 T7899 amod RIP1-independent,changes
R5163 T7899 T7896 dobj changes,separated
R5164 T7900 T7899 punct ",",changes
R5165 T7901 T7903 nsubj which,reflect
R5166 T7902 T7903 advmod likely,reflect
R5167 T7903 T7899 relcl reflect,changes
R5168 T7904 T7905 det the,ability
R5169 T7905 T7903 dobj ability,reflect
R5170 T7906 T7905 prep of,ability
R5171 T7907 T7909 amod additional,kinases
R5172 T7908 T7909 amod upstream,kinases
R5173 T7909 T7906 pobj kinases,of
R5174 T7910 T7909 punct ",",kinases
R5175 T7911 T7912 amod such,as
R5176 T7912 T7909 prep as,kinases
R5177 T7913 T7912 pobj Ask1,as
R5178 T7914 T7915 aux to,activate
R5179 T7915 T7905 acl activate,ability
R5180 T7916 T7917 compound JNK,[
R5181 T7917 T7915 dobj [,activate
R5182 T7918 T7919 nummod 27,]
R5183 T7919 T7917 appos ],[
R5184 T7920 T7917 punct ",",[
R5185 T7921 T7915 prep from,activate
R5186 T7922 T7927 det the,signaling
R5187 T7923 T7925 amod late,kinase-dependent
R5188 T7924 T7925 nummod RIP1,kinase-dependent
R5189 T7925 T7927 amod kinase-dependent,signaling
R5190 T7926 T7927 amod necroptotic,signaling
R5191 T7927 T7921 pobj signaling,from
R5192 T7928 T7896 punct .,separated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7985 916-924 Positive_regulation denotes activate
T7984 949-960 Protein denotes RIP1 kinase
T7983 925-928 Protein denotes JNK
T7982 908-912 Protein denotes Ask1
T7981 809-813 Protein denotes RIP1
T7980 711-718 Negative_regulation denotes reduced
T7979 711-718 Negative_regulation denotes reduced
T7978 719-725 Positive_regulation denotes levels
T7977 719-725 Positive_regulation denotes levels
T7976 734-737 Protein denotes Jun
T7975 729-733 Protein denotes pJNK
T7974 657-662 Protein denotes Nec-1
T7973 607-615 Positive_regulation denotes increase
T7972 607-615 Positive_regulation denotes increase
T7971 623-638 Phosphorylation denotes phosphorylation
T7970 623-638 Phosphorylation denotes phosphorylation
T7969 650-655 Protein denotes c-Jun
T7968 642-645 Protein denotes JNK
T7967 565-569 Protein denotes TNFα
T7966 480-490 Positive_regulation denotes activation
T7965 501-505 Protein denotes TNFα
T7964 494-497 Protein denotes JNK
T7963 303-313 Positive_regulation denotes activation
T7962 426-436 Protein denotes Akt Thr308
T7961 408-412 Protein denotes TNFα
T7960 317-325 Protein denotes Akt p308
T7959 275-279 Protein denotes TNFα
T7958 154-169 Phosphorylation denotes phosphorylation
T7957 154-169 Phosphorylation denotes phosphorylation
T7956 90-100 Negative_regulation denotes inhibitors
T7955 244-247 Protein denotes S4A
T7954 239-242 Protein denotes Fig
T7953 229-237 Protein denotes zVAD.fmk
T7952 150-153 Protein denotes JNK
T7951 143-146 Protein denotes Akt
T7950 119-123 Protein denotes TNFα
T7949 85-89 Protein denotes FGFR
T7948 16-20 Protein denotes TNFα
R5198 T7949 T7956 themeOf FGFR,inhibitors
R5199 T7951 T7957 themeOf Akt,phosphorylation
R5200 T7952 T7958 themeOf JNK,phosphorylation
R5201 T7960 T7963 themeOf Akt p308,activation
R5202 T7964 T7966 themeOf JNK,activation
R5203 T7965 T7966 causeOf TNFα,activation
R5204 T7968 T7970 themeOf JNK,phosphorylation
R5205 T7969 T7971 themeOf c-Jun,phosphorylation
R5206 T7970 T7972 themeOf phosphorylation,increase
R5207 T7971 T7973 themeOf phosphorylation,increase
R5208 T7975 T7977 themeOf pJNK,levels
R5209 T7976 T7978 themeOf Jun,levels
R5210 T7977 T7979 themeOf levels,reduced
R5211 T7978 T7980 themeOf levels,reduced
R5212 T7982 T7985 causeOf Ask1,activate
R5213 T7983 T7985 themeOf JNK,activate

test3

Id Subject Object Predicate Lexical cue
T7407 949-953 Protein denotes RIP1
T7406 908-912 Protein denotes Ask1
T7405 809-813 Protein denotes RIP1
T7404 711-718 Negative_regulation denotes reduced
T7403 650-655 Protein denotes c-Jun
T7402 623-638 Phosphorylation denotes phosphorylation
T7401 607-615 Positive_regulation denotes increase
T7400 565-569 Protein denotes TNFα
T7399 501-505 Protein denotes TNFα
T7398 408-412 Protein denotes TNFα
T7397 303-313 Positive_regulation denotes activation
T7396 275-279 Protein denotes TNFα
T7395 154-169 Phosphorylation denotes phosphorylation
T7394 132-139 Regulation denotes changes
T7393 124-131 Positive_regulation denotes induced
T7392 119-123 Protein denotes TNFα
T7391 16-20 Protein denotes TNFα
T7387 949-953 Protein denotes RIP1
T7386 908-912 Protein denotes Ask1
T7385 809-813 Protein denotes RIP1
T7384 650-655 Protein denotes c-Jun
T7383 565-569 Protein denotes TNFα
T7382 501-505 Protein denotes TNFα
T7381 408-412 Protein denotes TNFα
T7380 275-279 Protein denotes TNFα
T7379 119-123 Protein denotes TNFα
T7378 16-20 Protein denotes TNFα
R4789 T7392 T7393 causeOf TNFα,induced
R4790 T7394 T7393 themeOf changes,induced
R4791 T7395 T7394 themeOf phosphorylation,changes
R4792 T7400 T7401 causeOf TNFα,increase
R4793 T7402 T7401 themeOf phosphorylation,increase
R4794 T7403 T7402 themeOf c-Jun,phosphorylation