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PMC:3585731 / 16568-16817 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T7371 154-169 Phosphorylation denotes phosphorylation
T7370 132-139 Regulation denotes changes
T7369 109-118 Negative_regulation denotes attenuate
T7357 119-123 Protein denotes TNFα
T7356 16-20 Protein denotes TNFα
R4785 T7370 T7369 themeOf changes,attenuate
R4786 T7371 T7370 themeOf phosphorylation,changes

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7539 247-248 -RRB- denotes )
T7538 244-247 NN denotes S4A
T7537 239-243 NN denotes Fig.
T7536 238-239 -LRB- denotes (
T7535 229-237 NN denotes zVAD.fmk
T7534 226-228 TO denotes to
T7533 217-225 NN denotes response
T7532 214-216 IN denotes in
T7531 206-213 NN denotes changes
T7530 200-205 DT denotes these
T7529 189-199 VB denotes preventing
T7528 177-188 RB denotes efficiently
T7527 171-176 IN denotes while
T7526 169-170 -COMMA- denotes ,
T7525 154-169 NN denotes phosphorylation
T7524 150-153 NN denotes JNK
T7523 147-149 CC denotes or
T7522 143-146 NN denotes Akt
T7521 140-142 IN denotes in
T7520 132-139 NN denotes changes
T7519 119-131 JJ denotes TNFα-induced
T7518 109-118 VB denotes attenuate
T7517 105-108 RB denotes not
T7516 101-104 VB denotes did
T7515 90-100 NN denotes inhibitors
T7514 85-89 NN denotes FGFR
T7513 83-84 -COMMA- denotes ,
T7512 82-83 -RRB- denotes )
T7511 80-82 NN denotes 1A
T7510 75-79 NNP denotes Fig.
T7509 74-75 -LRB- denotes (
T7508 66-73 NN denotes factors
T7507 59-65 NN denotes growth
T7506 56-58 IN denotes of
T7505 42-55 RB denotes independently
T7504 30-41 NN denotes necroptosis
T7503 21-29 VB denotes inducing
T7502 16-20 NN denotes TNFα
T7501 11-15 IN denotes with
T7500 0-10 JJ denotes Consistent
R4813 T7502 T7501 arg2Of TNFα,with
R4814 T7502 T7503 arg1Of TNFα,inducing
R4815 T7503 T7501 arg3Of inducing,with
R4816 T7503 T7505 arg1Of inducing,independently
R4817 T7504 T7503 arg2Of necroptosis,inducing
R4818 T7505 T7506 arg1Of independently,of
R4819 T7508 T7506 arg2Of factors,of
R4820 T7508 T7507 arg1Of factors,growth
R4821 T7508 T7509 arg1Of factors,(
R4822 T7511 T7509 arg2Of 1A,(
R4823 T7511 T7510 arg1Of 1A,Fig.
R4824 T7512 T7509 arg3Of ),(
R4825 T7515 T7500 arg1Of inhibitors,Consistent
R4826 T7515 T7514 arg1Of inhibitors,FGFR
R4827 T7515 T7516 arg1Of inhibitors,did
R4828 T7515 T7518 arg1Of inhibitors,attenuate
R4829 T7515 T7529 arg1Of inhibitors,preventing
R4830 T7518 T7500 modOf attenuate,Consistent
R4831 T7518 T7501 arg1Of attenuate,with
R4832 T7518 T7513 arg1Of attenuate,","
R4833 T7518 T7516 arg2Of attenuate,did
R4834 T7518 T7517 arg1Of attenuate,not
R4835 T7518 T7526 arg1Of attenuate,","
R4836 T7518 T7527 arg1Of attenuate,while
R4837 T7520 T7518 arg2Of changes,attenuate
R4838 T7520 T7519 arg1Of changes,TNFα-induced
R4839 T7520 T7521 arg1Of changes,in
R4840 T7522 T7523 arg1Of Akt,or
R4841 T7524 T7523 arg2Of JNK,or
R4842 T7525 T7521 arg2Of phosphorylation,in
R4843 T7525 T7522 arg1Of phosphorylation,Akt
R4844 T7525 T7524 arg1Of phosphorylation,JNK
R4845 T7529 T7527 arg2Of preventing,while
R4846 T7529 T7528 arg1Of preventing,efficiently
R4847 T7529 T7532 arg1Of preventing,in
R4848 T7531 T7529 arg2Of changes,preventing
R4849 T7531 T7530 arg1Of changes,these
R4850 T7533 T7532 arg2Of response,in
R4851 T7533 T7534 arg1Of response,to
R4852 T7535 T7534 arg2Of zVAD.fmk,to
R4853 T7535 T7536 arg1Of zVAD.fmk,(
R4854 T7538 T7536 arg2Of S4A,(
R4855 T7538 T7537 arg1Of S4A,Fig.
R4856 T7539 T7536 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T7433 119-123 Protein denotes TNFα
T7432 16-20 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T7700 143-146 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T7696 143-146 http://www.uniprot.org/uniprot/P31751 denotes Akt
T7692 143-146 http://www.uniprot.org/uniprot/P31749 denotes Akt
T7686 119-123 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T7685 16-20 http://www.uniprot.org/uniprot/P01375 denotes TNFα

GO-BP

Id Subject Object Predicate Lexical cue
T7453 150-153 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T7452 85-89 http://purl.obolibrary.org/obo/GO_0005007 denotes FGFR
T7450 59-65 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T7448 30-41 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T7446 30-41 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T7443 154-169 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-MF

Id Subject Object Predicate Lexical cue
T7461 150-153 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T7460 85-89 http://purl.obolibrary.org/obo/GO_0005007 denotes FGFR

sentences

Id Subject Object Predicate Lexical cue
T7410 0-249 Sentence denotes Consistent with TNFα inducing necroptosis independently of growth factors (Fig. 1A), FGFR inhibitors did not attenuate TNFα-induced changes in Akt or JNK phosphorylation, while efficiently preventing these changes in response to zVAD.fmk (Fig. S4A).
T103 0-249 Sentence denotes Consistent with TNFα inducing necroptosis independently of growth factors (Fig. 1A), FGFR inhibitors did not attenuate TNFα-induced changes in Akt or JNK phosphorylation, while efficiently preventing these changes in response to zVAD.fmk (Fig. S4A).

simple1

Id Subject Object Predicate Lexical cue
T7467 119-123 Protein denotes TNFα
T7466 16-20 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T7681 124-131 Positive_regulation denotes induced
T7672 119-123 Protein denotes TNFα
T7671 16-20 Protein denotes TNFα
R4988 T7672 T7681 themeOf TNFα,induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T7940 124-131 Positive_regulation denotes induced
T7931 119-123 Protein denotes TNFα
T7930 16-20 Protein denotes TNFα
R5193 T7931 T7940 themeOf TNFα,induced

DLUT931

Id Subject Object Predicate Lexical cue
T7719 21-29 Positive_regulation denotes inducing
T7718 124-131 Positive_regulation denotes induced
T7717 30-41 Negative_regulation denotes necroptosis
T7708 119-123 Protein denotes TNFα
T7707 16-20 Protein denotes TNFα
R4991 T7707 T7717 themeOf TNFα,necroptosis
R4992 T7708 T7718 themeOf TNFα,induced
R4995 T7717 T7719 themeOf necroptosis,inducing
R4996 T7719 T7717 themeOf inducing,necroptosis

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue Negation
T8073 85-169 Negative_regulation denotes FGFR inhibitors did not attenuate TNFα-induced changes in Akt or JNK phosphorylation true
T8068 150-169 Phosphorylation denotes JNK phosphorylation
T8053 150-153 Protein denotes JNK
T8050 119-131 Protein denotes TNFα-induced
T8046 16-19 Protein denotes TNF
T8037 229-248 Entity denotes zVAD.fmk (Fig. S4A)
T8033 85-100 Entity denotes FGFR inhibitors
T8029 143-146 Protein denotes Akt
R5234 T8033 T8073 causeOf FGFR inhibitors,FGFR inhibitors did not attenuate TNFα-induced changes in Akt or JNK phosphorylation
R5243 T8053 T8068 themeOf JNK,JNK phosphorylation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7777 248-249 . denotes .
T7776 247-248 -RRB- denotes )
T7775 244-247 CD denotes S4A
T7774 242-243 . denotes .
T7773 239-242 NNP denotes Fig
T7772 238-239 -LRB- denotes (
T7771 229-237 NNP denotes zVAD.fmk
T7770 226-228 TO denotes to
T7769 217-225 NN denotes response
T7768 214-216 IN denotes in
T7767 206-213 NNS denotes changes
T7766 200-205 DT denotes these
T7765 189-199 VBG denotes preventing
T7764 177-188 RB denotes efficiently
T7763 171-176 IN denotes while
T7762 169-170 , denotes ,
T7761 154-169 NN denotes phosphorylation
T7760 150-153 NNP denotes JNK
T7759 147-149 CC denotes or
T7758 143-146 NNP denotes Akt
T7757 140-142 IN denotes in
T7756 132-139 NNS denotes changes
T7755 119-131 JJ denotes TNFα-induced
T7754 109-118 VB denotes attenuate
T7753 105-108 RB denotes not
T7752 101-104 VBD denotes did
T7751 90-100 NNS denotes inhibitors
T7750 85-89 NNP denotes FGFR
T7749 83-84 , denotes ,
T7748 82-83 -RRB- denotes )
T7747 80-82 NNP denotes 1A
T7746 75-79 NNP denotes Fig.
T7745 74-75 -LRB- denotes (
T7744 66-73 NNS denotes factors
T7743 59-65 NN denotes growth
T7742 56-58 IN denotes of
T7741 42-55 RB denotes independently
T7740 30-41 NN denotes necroptosis
T7739 21-29 VBG denotes inducing
T7738 16-20 NNP denotes TNFα
T7737 11-15 IN denotes with
T7736 0-10 NNP denotes Consistent
R5012 T7737 T7736 prep with,Consistent
R5013 T7738 T7739 nsubj TNFα,inducing
R5014 T7739 T7754 advcl inducing,attenuate
R5015 T7740 T7739 dobj necroptosis,inducing
R5016 T7741 T7739 advmod independently,inducing
R5017 T7742 T7741 prep of,independently
R5018 T7743 T7744 compound growth,factors
R5019 T7744 T7742 pobj factors,of
R5020 T7745 T7747 punct (,1A
R5021 T7746 T7747 compound Fig.,1A
R5022 T7747 T7739 parataxis 1A,inducing
R5023 T7748 T7747 punct ),1A
R5024 T7749 T7754 punct ",",attenuate
R5025 T7750 T7751 compound FGFR,inhibitors
R5026 T7751 T7754 nsubj inhibitors,attenuate
R5027 T7752 T7754 aux did,attenuate
R5028 T7753 T7754 neg not,attenuate
R5029 T7754 T7754 ROOT attenuate,attenuate
R5030 T7755 T7756 amod TNFα-induced,changes
R5031 T7756 T7754 dobj changes,attenuate
R5032 T7757 T7756 prep in,changes
R5033 T7758 T7757 pobj Akt,in
R5034 T7759 T7758 cc or,Akt
R5035 T7760 T7761 compound JNK,phosphorylation
R5036 T7761 T7754 oprd phosphorylation,attenuate
R5037 T7762 T7754 punct ",",attenuate
R5038 T7763 T7765 mark while,preventing
R5039 T7764 T7765 advmod efficiently,preventing
R5040 T7765 T7754 advcl preventing,attenuate
R5041 T7766 T7767 det these,changes
R5042 T7767 T7765 dobj changes,preventing
R5043 T7768 T7765 prep in,preventing
R5044 T7769 T7768 pobj response,in
R5045 T7770 T7769 prep to,response
R5046 T7771 T7770 pobj zVAD.fmk,to
R5047 T7772 T7773 punct (,Fig
R5048 T7773 T7771 appos Fig,zVAD.fmk
R5049 T7774 T7775 punct .,S4A
R5050 T7775 T7754 dep S4A,attenuate
R5051 T7776 T7775 punct ),S4A
R5052 T7777 T7754 punct .,attenuate

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7958 154-169 Phosphorylation denotes phosphorylation
T7957 154-169 Phosphorylation denotes phosphorylation
T7956 90-100 Negative_regulation denotes inhibitors
T7955 244-247 Protein denotes S4A
T7954 239-242 Protein denotes Fig
T7953 229-237 Protein denotes zVAD.fmk
T7952 150-153 Protein denotes JNK
T7951 143-146 Protein denotes Akt
T7950 119-123 Protein denotes TNFα
T7949 85-89 Protein denotes FGFR
T7948 16-20 Protein denotes TNFα
R5198 T7949 T7956 themeOf FGFR,inhibitors
R5199 T7951 T7957 themeOf Akt,phosphorylation
R5200 T7952 T7958 themeOf JNK,phosphorylation

test3

Id Subject Object Predicate Lexical cue
T7395 154-169 Phosphorylation denotes phosphorylation
T7394 132-139 Regulation denotes changes
T7393 124-131 Positive_regulation denotes induced
T7392 119-123 Protein denotes TNFα
T7391 16-20 Protein denotes TNFα
T7379 119-123 Protein denotes TNFα
T7378 16-20 Protein denotes TNFα
R4789 T7392 T7393 causeOf TNFα,induced
R4790 T7394 T7393 themeOf changes,induced
R4791 T7395 T7394 themeOf phosphorylation,changes