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PMC:3585731 / 16234-16461 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T5151 90-105 Phosphorylation denotes phosphorylation
T5150 65-74 Positive_regulation denotes increases
T5089 215-219 Protein denotes RIP1
R3537 T5151 T5150 themeOf phosphorylation,increases

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T6320 57-64 VB denotes delayed
T6319 48-56 VB denotes observed
T6318 44-47 DT denotes the
T6317 39-43 IN denotes that
T6316 30-38 VB denotes indicate
T6315 22-29 NN denotes results
T6314 16-21 DT denotes these
T6313 14-15 -COMMA- denotes ,
T6312 6-14 RB denotes together
T6311 0-5 VB denotes Taken
T6344 220-226 NN denotes kinase
T6343 215-219 NN denotes RIP1
T6342 210-214 IN denotes from
T6341 199-209 RB denotes downstream
T6340 189-198 NN denotes signaling
T6339 177-188 JJ denotes necroptotic
T6338 174-176 IN denotes of
T6337 161-173 NN denotes consequences
T6336 152-160 JJ denotes specific
T6335 142-151 VB denotes represent
T6334 140-141 -COMMA- denotes ,
T6333 135-140 NN denotes death
T6332 130-134 NN denotes cell
T6331 127-129 IN denotes of
T6330 121-126 NN denotes onset
T6329 117-120 DT denotes the
T6328 107-116 VB denotes preceding
T6327 105-106 -COMMA- denotes ,
T6326 90-105 NN denotes phosphorylation
T6325 86-89 NN denotes JNK
T6324 82-85 CC denotes and
T6323 78-81 NN denotes Akt
T6322 75-77 IN denotes in
T6321 65-74 NN denotes increases
R4363 T6311 T6312 arg1Of Taken,together
R4364 T6315 T6314 arg1Of results,these
R4365 T6315 T6316 arg1Of results,indicate
R4366 T6316 T6311 modOf indicate,Taken
R4367 T6316 T6313 arg1Of indicate,","
R4368 T6321 T6318 arg1Of increases,the
R4369 T6321 T6319 arg2Of increases,observed
R4370 T6321 T6320 arg2Of increases,delayed
R4371 T6321 T6322 arg1Of increases,in
R4372 T6321 T6327 arg1Of increases,","
R4373 T6321 T6335 arg1Of increases,represent
R4374 T6323 T6324 arg1Of Akt,and
R4375 T6325 T6324 arg2Of JNK,and
R4376 T6326 T6322 arg2Of phosphorylation,in
R4377 T6326 T6323 arg1Of phosphorylation,Akt
R4378 T6326 T6325 arg1Of phosphorylation,JNK
R4379 T6328 T6327 arg2Of preceding,","
R4380 T6330 T6328 arg2Of onset,preceding
R4381 T6330 T6329 arg1Of onset,the
R4382 T6330 T6331 arg1Of onset,of
R4383 T6333 T6331 arg2Of death,of
R4384 T6333 T6332 arg1Of death,cell
R4385 T6335 T6316 arg2Of represent,indicate
R4386 T6335 T6317 arg1Of represent,that
R4387 T6335 T6334 arg1Of represent,","
R4388 T6335 T6342 arg1Of represent,from
R4389 T6337 T6335 arg2Of consequences,represent
R4390 T6337 T6336 arg1Of consequences,specific
R4391 T6337 T6338 arg1Of consequences,of
R4392 T6337 T6341 arg1Of consequences,downstream
R4393 T6340 T6338 arg2Of signaling,of
R4394 T6340 T6339 arg1Of signaling,necroptotic
R4395 T6344 T6342 arg2Of kinase,from
R4396 T6344 T6343 arg1Of kinase,RIP1

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T5400 215-219 Protein denotes RIP1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6491 78-81 http://www.uniprot.org/uniprot/P31751 denotes Akt
T6435 215-219 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T6519 78-81 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T6463 78-81 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T5489 189-198 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T5481 90-105 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T5460 86-89 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T5445 130-140 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T5436 135-140 http://purl.obolibrary.org/obo/GO_0016265 denotes death

GO-MF

Id Subject Object Predicate Lexical cue
T5508 86-89 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-CC

Id Subject Object Predicate Lexical cue
T5518 130-134 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T5309 0-227 Sentence denotes Taken together, these results indicate that the observed delayed increases in Akt and JNK phosphorylation, preceding the onset of cell death, represent specific consequences of necroptotic signaling downstream from RIP1 kinase.
T101 0-227 Sentence denotes Taken together, these results indicate that the observed delayed increases in Akt and JNK phosphorylation, preceding the onset of cell death, represent specific consequences of necroptotic signaling downstream from RIP1 kinase.

simple1

Id Subject Object Predicate Lexical cue
T5553 215-219 Protein denotes RIP1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T6412 215-219 Protein denotes RIP1

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T6693 215-219 Protein denotes RIP1

DLUT931

Id Subject Object Predicate Lexical cue
T6573 215-219 Protein denotes RIP1

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T7309 86-106 Phosphorylation denotes JNK phosphorylation,
T7243 86-89 Protein denotes JNK
T7168 215-226 Protein denotes RIP1 kinase
T7167 215-219 Protein denotes RIP1
T7163 127-134 Entity denotes of cell
T7149 78-81 Protein denotes Akt
R4755 T7243 T7309 themeOf JNK,"JNK phosphorylation,"

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T6927 65-74 Positive_regulation denotes increases
T6926 65-74 Positive_regulation denotes increases
T6925 90-105 Phosphorylation denotes phosphorylation
T6924 90-105 Phosphorylation denotes phosphorylation
T6923 65-74 Positive_regulation denotes increases
T6922 215-226 Protein denotes RIP1 kinase
T6921 86-89 Protein denotes JNK
T6920 78-81 Protein denotes Akt
R4603 T6920 T6923 themeOf Akt,increases
R4605 T6920 T6924 themeOf Akt,phosphorylation
R4608 T6921 T6925 themeOf JNK,phosphorylation
R4614 T6924 T6926 themeOf phosphorylation,increases
R4616 T6925 T6927 themeOf phosphorylation,increases

test3

Id Subject Object Predicate Lexical cue
T5276 215-219 Protein denotes RIP1
T5275 65-74 Positive_regulation denotes increases
T5185 215-219 Protein denotes RIP1