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PMC:3585731 / 15366-15762 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T5142 304-314 Positive_regulation denotes activation
T5141 241-249 Positive_regulation denotes increase
T5140 219-226 Negative_regulation denotes blocked
T5139 109-118 Positive_regulation denotes triggered
T5138 93-108 Phosphorylation denotes phosphorylation
T5137 58-66 Positive_regulation denotes increase
T5136 38-44 Regulation denotes effect
T5087 375-379 Protein denotes RIP1
T5086 231-235 Protein denotes bFGF
T5085 136-140 Protein denotes bFGF
T5084 127-131 Protein denotes bFGF
T5083 87-92 Protein denotes c-Jun
R3511 T5083 T5138 themeOf c-Jun,phosphorylation
R3512 T5084 T5139 causeOf bFGF,triggered
R3513 T5085 T5139 causeOf bFGF,triggered
R3514 T5086 T5141 themeOf bFGF,increase
R3530 T5137 T5136 themeOf increase,effect
R3531 T5138 T5139 themeOf phosphorylation,triggered
R3532 T5138 T5137 themeOf phosphorylation,increase
R3533 T5141 T5140 themeOf increase,blocked

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T5398 375-379 Protein denotes RIP1
T5397 231-235 Protein denotes bFGF
T5396 136-140 Protein denotes bFGF
T5395 127-131 Protein denotes bFGF
T5394 87-92 Protein denotes c-Jun

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6487 318-321 http://www.uniprot.org/uniprot/P31751 denotes Akt
T6486 75-78 http://www.uniprot.org/uniprot/P31751 denotes Akt
T6433 375-379 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T6526 231-235 http://www.uniprot.org/uniprot/Q788Q8 denotes bFGF
T6525 136-140 http://www.uniprot.org/uniprot/Q788Q8 denotes bFGF
T6524 127-131 http://www.uniprot.org/uniprot/Q788Q8 denotes bFGF
T6515 318-321 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T6514 75-78 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T6459 318-321 http://www.uniprot.org/uniprot/P31749 denotes Akt
T6458 75-78 http://www.uniprot.org/uniprot/P31749 denotes Akt
T6539 87-92 http://www.uniprot.org/uniprot/P05412 denotes c-Jun

GO-BP

Id Subject Object Predicate Lexical cue
T5488 380-395 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity
T5476 93-108 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T5459 326-329 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T5458 83-86 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T5419 346-357 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T5409 346-357 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-MF

Id Subject Object Predicate Lexical cue
T5509 380-395 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity
T5507 326-329 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T5506 83-86 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

sentences

Id Subject Object Predicate Lexical cue
T98 0-396 Sentence denotes Furthermore, Nec-1 had no significant effect on the early increase in both Akt and JNK/c-Jun phosphorylation triggered by both bFGF and bFGF/zVAD, while Nec-1, but not its inactive analog Nec-1i (Fig. S1E), efficiently blocked the bFGF/zVAD increase at 6–9 hr (Fig. 3D), suggesting that only the delayed activation of Akt and JNK is specific for necroptosis and dependent on RIP1 kinase activity.

simple1

Id Subject Object Predicate Lexical cue
T5551 375-379 Protein denotes RIP1
T5550 231-235 Protein denotes bFGF
T5549 136-140 Protein denotes bFGF
T5548 127-131 Protein denotes bFGF
T5547 87-92 Protein denotes c-Jun

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T6428 219-226 Negative_regulation denotes blocked
T6427 58-66 Positive_regulation denotes increase
T6426 362-371 Positive_regulation denotes dependent
T6425 241-249 Positive_regulation denotes increase
T6424 93-108 Phosphorylation denotes phosphorylation
T6410 375-379 Protein denotes RIP1
T6409 231-235 Protein denotes bFGF
T6408 136-140 Protein denotes bFGF
T6407 127-131 Protein denotes bFGF
T6406 87-92 Protein denotes c-Jun
R4412 T6406 T6424 themeOf c-Jun,phosphorylation
R4413 T6409 T6425 themeOf bFGF,increase
R4414 T6410 T6426 themeOf RIP1,dependent
R4420 T6424 T6427 themeOf phosphorylation,increase
R4421 T6425 T6428 themeOf increase,blocked

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T6708 241-249 Positive_regulation denotes increase
T6707 219-226 Negative_regulation denotes blocked
T6691 375-379 Protein denotes RIP1
T6690 231-235 Protein denotes bFGF
T6689 136-140 Protein denotes bFGF
T6688 127-131 Protein denotes bFGF
T6687 87-92 Protein denotes c-Jun
R4491 T6690 T6708 themeOf bFGF,increase
R4498 T6708 T6707 themeOf increase,blocked

DLUT931

Id Subject Object Predicate Lexical cue
T6593 219-226 Negative_regulation denotes blocked
T6592 241-249 Positive_regulation denotes increase
T6591 109-118 Positive_regulation denotes triggered
T6590 93-108 Phosphorylation denotes phosphorylation
T6571 375-379 Protein denotes RIP1
T6570 231-235 Protein denotes bFGF
T6569 136-140 Protein denotes bFGF
T6568 127-131 Protein denotes bFGF
T6567 87-92 Protein denotes c-Jun
R4438 T6567 T6590 themeOf c-Jun,phosphorylation
R4439 T6568 T6591 themeOf bFGF,triggered
R4440 T6569 T6591 causeOf bFGF,triggered
R4441 T6570 T6592 themeOf bFGF,increase
R4452 T6592 T6593 themeOf increase,blocked

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T7285 292-329 Positive_regulation denotes the delayed activation of Akt and JNK
T7284 292-329 Positive_regulation denotes the delayed activation of Akt and JNK
T7278 292-329 Negative_regulation denotes the delayed activation of Akt and JNK
T7277 292-329 Negative_regulation denotes the delayed activation of Akt and JNK
T7246 362-395 Protein denotes dependent on RIP1 kinase activity
T7227 318-321 Protein denotes Akt
T7192 375-379 Protein denotes RIP1
T7174 326-329 Protein denotes JNK
R4714 T7174 T7285 themeOf JNK,the delayed activation of Akt and JNK
R4746 T7227 T7284 themeOf Akt,the delayed activation of Akt and JNK
R4772 T7284 T7277 themeOf the delayed activation of Akt and JNK,the delayed activation of Akt and JNK
R4773 T7285 T7278 themeOf the delayed activation of Akt and JNK,the delayed activation of Akt and JNK

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T6897 219-226 Negative_regulation denotes blocked
T6896 219-226 Negative_regulation denotes blocked
T6895 58-66 Positive_regulation denotes increase
T6894 58-66 Positive_regulation denotes increase
T6893 58-66 Positive_regulation denotes increase
T6892 304-314 Positive_regulation denotes activation
T6891 304-314 Positive_regulation denotes activation
T6890 241-249 Positive_regulation denotes increase
T6889 93-108 Phosphorylation denotes phosphorylation
T6888 93-108 Phosphorylation denotes phosphorylation
T6887 93-108 Phosphorylation denotes phosphorylation
T6886 58-66 Positive_regulation denotes increase
T6885 375-386 Protein denotes RIP1 kinase
T6884 326-329 Protein denotes JNK
T6883 318-321 Protein denotes Akt
T6882 231-240 Protein denotes bFGF/zVAD
T6881 201-204 Protein denotes S1E
T6880 196-199 Protein denotes Fig
T6879 181-194 Protein denotes analog Nec-1i
T6878 153-158 Protein denotes Nec-1
T6877 141-145 Protein denotes zVAD
T6876 136-140 Protein denotes bFGF
T6875 127-131 Protein denotes bFGF
T6874 87-92 Protein denotes c-Jun
T6873 83-86 Protein denotes JNK
T6872 75-78 Protein denotes Akt
T6871 13-18 Protein denotes Nec-1
R4574 T6871 T6886 causeOf Nec-1,increase
R4575 T6871 T6893 causeOf Nec-1,increase
R4576 T6871 T6894 causeOf Nec-1,increase
R4577 T6871 T6895 causeOf Nec-1,increase
R4578 T6872 T6886 themeOf Akt,increase
R4579 T6872 T6887 themeOf Akt,phosphorylation
R4581 T6873 T6888 themeOf JNK,phosphorylation
R4584 T6874 T6889 themeOf c-Jun,phosphorylation
R4586 T6878 T6896 causeOf Nec-1,blocked
R4588 T6879 T6897 causeOf analog Nec-1i,blocked
R4590 T6882 T6890 themeOf bFGF/zVAD,increase
R4592 T6883 T6891 themeOf Akt,activation
R4594 T6884 T6892 themeOf JNK,activation
R4597 T6887 T6893 themeOf phosphorylation,increase
R4598 T6888 T6894 themeOf phosphorylation,increase
R4599 T6889 T6895 themeOf phosphorylation,increase
R4600 T6890 T6896 themeOf increase,blocked
R4601 T6890 T6897 themeOf increase,blocked

test3

Id Subject Object Predicate Lexical cue
T5266 375-379 Protein denotes RIP1
T5265 304-314 Positive_regulation denotes activation
T5264 241-249 Positive_regulation denotes increase
T5263 231-235 Protein denotes bFGF
T5262 136-140 Protein denotes bFGF
T5261 127-131 Protein denotes bFGF
T5260 109-118 Positive_regulation denotes triggered
T5259 93-108 Phosphorylation denotes phosphorylation
T5258 87-92 Protein denotes c-Jun
T5257 58-66 Positive_regulation denotes increase
T5256 38-44 Regulation denotes effect
T5183 375-379 Protein denotes RIP1
T5182 231-235 Protein denotes bFGF
T5181 136-140 Protein denotes bFGF
T5180 127-131 Protein denotes bFGF
T5179 87-92 Protein denotes c-Jun
R3569 T5258 T5259 themeOf c-Jun,phosphorylation
R3570 T5259 T5257 themeOf phosphorylation,increase
R3571 T5260 T5257 themeOf triggered,increase
R3572 T5261 T5260 causeOf bFGF,triggered
R3573 T5262 T5260 causeOf bFGF,triggered
R3574 T5263 T5264 causeOf bFGF,increase