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PMC:3585731 / 134-597 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T22 446-450 Regulation denotes role
T15 454-458 Protein denotes TNFα
T14 341-345 Protein denotes RIP1
T13 309-339 Protein denotes receptor interacting protein-1
R1 T14 T13 equivalentTo RIP1,receptor interacting protein-1

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T234 454-458 NN denotes TNFα
T233 451-453 IN denotes in
T232 446-450 NN denotes role
T231 442-445 JJ denotes key
T230 440-441 DT denotes a
T229 434-439 VB denotes plays
T228 430-433 CC denotes and
T227 424-429 NN denotes cells
T226 419-423 NN denotes L929
T225 416-418 IN denotes in
T224 404-415 NN denotes necroptosis
T223 400-403 IN denotes for
T222 391-399 JJ denotes critical
T221 388-390 VB denotes is
T220 379-387 NN denotes activity
T219 372-378 NN denotes kinase
T218 368-371 NN denotes Akt
T217 363-367 IN denotes that
T216 358-362 VB denotes show
T215 355-357 PRP denotes We
T214 347-353 NN denotes kinase
T213 345-346 -RRB- denotes )
T212 341-345 NN denotes RIP1
T211 340-341 -LRB- denotes (
T210 330-339 NN denotes protein-1
T209 318-329 NN denotes interacting
T208 309-317 NN denotes receptor
T207 300-308 NN denotes mediator
T206 288-299 NN denotes necroptosis
T205 284-287 DT denotes the
T204 281-283 IN denotes by
T203 270-280 VB denotes controlled
T202 259-269 NN denotes mechanisms
T201 249-258 NN denotes signaling
T200 245-248 DT denotes the
T199 232-244 VB denotes investigated
T198 229-231 PRP denotes we
T197 227-228 -COMMA- denotes ,
T196 223-227 NN denotes work
T195 218-222 DT denotes this
T194 215-217 IN denotes In
T193 212-213 -RRB- denotes )
T192 208-212 NN denotes SIRS
T191 207-208 -LRB- denotes (
T190 198-206 NN denotes syndrome
T189 189-197 NN denotes response
T188 176-188 JJ denotes inflammatory
T187 167-175 JJ denotes systemic
T186 163-166 CC denotes and
T185 150-162 NN denotes inflammation
T184 139-149 JJ denotes intestinal
T183 129-138 VB denotes including
T182 120-128 NN denotes diseases
T181 112-119 JJ denotes various
T180 109-111 IN denotes of
T179 96-108 NN denotes pathogenesis
T178 92-95 DT denotes the
T177 89-91 IN denotes in
T176 78-88 VB denotes implicated
T175 73-77 VB denotes been
T174 69-72 VB denotes has
T173 64-68 WDT denotes that
T172 58-63 NN denotes death
T171 53-57 NN denotes cell
T170 44-52 JJ denotes necrotic
T169 41-43 IN denotes of
T168 36-40 NN denotes form
T167 26-35 VB denotes regulated
T166 24-25 DT denotes a
T165 21-23 VB denotes is
T164 9-20 NN denotes Necroptosis
R25 T164 T165 arg1Of Necroptosis,is
R26 T168 T165 arg2Of form,is
R27 T168 T166 arg1Of form,a
R28 T168 T167 arg2Of form,regulated
R29 T168 T169 arg1Of form,of
R30 T168 T173 arg1Of form,that
R31 T168 T174 arg1Of form,has
R32 T168 T175 arg1Of form,been
R33 T168 T176 arg2Of form,implicated
R34 T172 T169 arg2Of death,of
R35 T172 T170 arg1Of death,necrotic
R36 T172 T171 arg1Of death,cell
R37 T176 T174 arg2Of implicated,has
R38 T176 T175 arg2Of implicated,been
R39 T176 T177 arg1Of implicated,in
R40 T179 T177 arg2Of pathogenesis,in
R41 T179 T178 arg1Of pathogenesis,the
R42 T179 T180 arg1Of pathogenesis,of
R43 T182 T180 arg2Of diseases,of
R44 T182 T181 arg1Of diseases,various
R45 T182 T183 arg1Of diseases,including
R46 T185 T184 arg1Of inflammation,intestinal
R47 T185 T186 arg1Of inflammation,and
R48 T186 T183 arg2Of and,including
R49 T190 T186 arg2Of syndrome,and
R50 T190 T187 arg1Of syndrome,systemic
R51 T190 T188 arg1Of syndrome,inflammatory
R52 T190 T189 arg1Of syndrome,response
R53 T190 T191 arg1Of syndrome,(
R54 T192 T191 arg2Of SIRS,(
R55 T193 T191 arg3Of ),(
R56 T196 T194 arg2Of work,In
R57 T196 T195 arg1Of work,this
R58 T198 T199 arg1Of we,investigated
R59 T199 T194 arg1Of investigated,In
R60 T199 T197 arg1Of investigated,","
R61 T202 T199 arg2Of mechanisms,investigated
R62 T202 T200 arg1Of mechanisms,the
R63 T202 T201 arg1Of mechanisms,signaling
R64 T202 T203 arg2Of mechanisms,controlled
R65 T212 T211 arg2Of RIP1,(
R66 T213 T211 arg3Of ),(
R67 T214 T203 arg1Of kinase,controlled
R68 T214 T204 arg2Of kinase,by
R69 T214 T205 arg1Of kinase,the
R70 T214 T206 arg1Of kinase,necroptosis
R71 T214 T207 arg1Of kinase,mediator
R72 T214 T208 arg1Of kinase,receptor
R73 T214 T209 arg1Of kinase,interacting
R74 T214 T210 arg1Of kinase,protein-1
R75 T214 T211 arg1Of kinase,(
R76 T215 T216 arg1Of We,show
R77 T220 T218 arg1Of activity,Akt
R78 T220 T219 arg1Of activity,kinase
R79 T220 T221 arg1Of activity,is
R80 T220 T222 arg1Of activity,critical
R81 T220 T229 arg1Of activity,plays
R82 T221 T225 arg1Of is,in
R83 T221 T228 arg1Of is,and
R84 T222 T221 arg2Of critical,is
R85 T222 T223 arg1Of critical,for
R86 T224 T223 arg2Of necroptosis,for
R87 T227 T225 arg2Of cells,in
R88 T227 T226 arg1Of cells,L929
R89 T228 T216 arg2Of and,show
R90 T228 T217 arg1Of and,that
R91 T229 T228 arg2Of plays,and
R92 T229 T233 arg1Of plays,in
R93 T232 T229 arg2Of role,plays
R94 T232 T230 arg1Of role,a
R95 T232 T231 arg1Of role,key

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T90 309-339 Protein denotes receptor interacting protein-1
T91 341-345 Protein denotes RIP1
T92 454-458 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T406 341-345 http://www.uniprot.org/uniprot/Q13546 denotes RIP1
T402 454-458 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T395 368-371 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T388 368-371 http://www.uniprot.org/uniprot/P31751 denotes Akt
T381 368-371 http://www.uniprot.org/uniprot/P31749 denotes Akt

UBERON-AE

Id Subject Object Predicate Lexical cue
T58 139-149 http://purl.obolibrary.org/obo/UBERON_0000160 denotes intestinal

GO-BP

Id Subject Object Predicate Lexical cue
T129 372-387 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity
T127 249-258 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T126 176-197 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammatory response
T125 150-162 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T124 96-108 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T121 58-63 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T118 53-63 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T117 44-63 http://purl.obolibrary.org/obo/GO_0097300 denotes necrotic cell death
T116 44-63 http://purl.obolibrary.org/obo/GO_0070265 denotes necrotic cell death
T115 44-63 http://purl.obolibrary.org/obo/GO_0010939 denotes necrotic cell death
T110 404-415 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T109 288-299 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T108 9-20 http://purl.obolibrary.org/obo/GO_0097528 denotes Necroptosis
T102 404-415 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T101 288-299 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T100 9-20 http://purl.obolibrary.org/obo/GO_0070266 denotes Necroptosis

GO-MF

Id Subject Object Predicate Lexical cue
T135 372-387 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activity

GO-CC

Id Subject Object Predicate Lexical cue
T137 53-57 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T61 9-214 Sentence denotes Necroptosis is a regulated form of necrotic cell death that has been implicated in the pathogenesis of various diseases including intestinal inflammation and systemic inflammatory response syndrome (SIRS).
T62 215-354 Sentence denotes In this work, we investigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase.
T3 0-8 Sentence denotes Abstract
T4 9-214 Sentence denotes Necroptosis is a regulated form of necrotic cell death that has been implicated in the pathogenesis of various diseases including intestinal inflammation and systemic inflammatory response syndrome (SIRS).
T5 215-354 Sentence denotes In this work, we investigated the signaling mechanisms controlled by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase.

simple1

Id Subject Object Predicate Lexical cue
T145 309-339 Protein denotes receptor interacting protein-1
T146 341-345 Protein denotes RIP1
T147 454-458 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T355 309-339 Protein denotes receptor interacting protein-1
T356 341-345 Protein denotes RIP1
T357 454-458 Protein denotes TNFα
T366 446-450 Regulation denotes role

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T443 309-339 Protein denotes receptor interacting protein-1
T444 341-345 Protein denotes RIP1
T445 454-458 Protein denotes TNFα

DLUT931

Id Subject Object Predicate Lexical cue
T424 446-450 Regulation denotes role
T412 309-339 Protein denotes receptor interacting protein-1
T413 341-345 Protein denotes RIP1
T414 454-458 Protein denotes TNFα

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T748 281-353 Protein denotes by the necroptosis mediator receptor interacting protein-1 (RIP1) kinase
T746 341-345 Protein denotes RIP1
T743 368-371 Protein denotes Akt
T742 368-378 Protein denotes Akt kinase
T736 309-346 Protein denotes receptor interacting protein-1 (RIP1)
T734 454-458 Protein denotes TNFα

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T533 229-231 PRP denotes we
T532 227-228 , denotes ,
T531 223-227 NN denotes work
T530 218-222 DT denotes this
T529 215-217 IN denotes In
T528 213-214 . denotes .
T527 212-213 -RRB- denotes )
T526 208-212 NNP denotes SIRS
T525 207-208 -LRB- denotes (
T524 198-206 NN denotes syndrome
T523 189-197 NN denotes response
T522 176-188 JJ denotes inflammatory
T521 167-175 JJ denotes systemic
T520 163-166 CC denotes and
T519 150-162 NN denotes inflammation
T518 139-149 JJ denotes intestinal
T517 129-138 VBG denotes including
T516 120-128 NNS denotes diseases
T515 112-119 JJ denotes various
T514 109-111 IN denotes of
T513 96-108 NN denotes pathogenesis
T512 92-95 DT denotes the
T511 89-91 IN denotes in
T510 78-88 VBN denotes implicated
T509 73-77 VBN denotes been
T508 69-72 VBZ denotes has
T507 64-68 WDT denotes that
T506 58-63 NN denotes death
T505 53-57 NN denotes cell
T504 44-52 JJ denotes necrotic
T503 41-43 IN denotes of
T502 36-40 NN denotes form
T501 26-35 JJ denotes regulated
T500 24-25 DT denotes a
T499 21-23 VBZ denotes is
T498 9-20 NNP denotes Necroptosis
T570 454-458 JJ denotes TNFα
T569 451-453 IN denotes in
T568 446-450 NN denotes role
T567 442-445 JJ denotes key
T566 440-441 DT denotes a
T565 434-439 VBZ denotes plays
T564 430-433 CC denotes and
T563 424-429 NNS denotes cells
T562 419-423 CD denotes L929
T561 416-418 IN denotes in
T560 404-415 NN denotes necroptosis
T559 400-403 IN denotes for
T558 391-399 JJ denotes critical
T557 388-390 VBZ denotes is
T556 379-387 NN denotes activity
T555 372-378 NN denotes kinase
T554 368-371 NNP denotes Akt
T553 363-367 IN denotes that
T552 358-362 VBP denotes show
T551 355-357 PRP denotes We
T550 353-354 . denotes .
T549 347-353 NN denotes kinase
T548 345-346 -RRB- denotes )
T547 341-345 CD denotes RIP1
T546 340-341 -LRB- denotes (
T545 330-339 NN denotes protein-1
T544 318-329 VBG denotes interacting
T543 309-317 NN denotes receptor
T542 300-308 NN denotes mediator
T541 288-299 NN denotes necroptosis
T540 284-287 DT denotes the
T539 281-283 IN denotes by
T538 270-280 VBN denotes controlled
T537 259-269 NNS denotes mechanisms
T536 249-258 VBG denotes signaling
T535 245-248 DT denotes the
T534 232-244 VBD denotes investigated
R240 T500 T502 det a,form
R241 T501 T502 amod regulated,form
R242 T502 T499 attr form,is
R243 T503 T502 prep of,form
R244 T504 T506 amod necrotic,death
R245 T505 T506 compound cell,death
R246 T506 T503 pobj death,of
R247 T507 T510 nsubjpass that,implicated
R248 T508 T510 aux has,implicated
R249 T509 T510 auxpass been,implicated
R250 T510 T506 relcl implicated,death
R251 T511 T510 prep in,implicated
R252 T512 T513 det the,pathogenesis
R253 T513 T511 pobj pathogenesis,in
R254 T514 T513 prep of,pathogenesis
R255 T515 T516 amod various,diseases
R256 T516 T514 pobj diseases,of
R257 T517 T516 prep including,diseases
R258 T518 T519 amod intestinal,inflammation
R259 T519 T517 pobj inflammation,including
R260 T520 T519 cc and,inflammation
R261 T521 T524 amod systemic,syndrome
R262 T522 T523 amod inflammatory,response
R263 T523 T524 compound response,syndrome
R264 T524 T519 conj syndrome,inflammation
R265 T525 T524 punct (,syndrome
R266 T526 T524 appos SIRS,syndrome
R267 T527 T524 punct ),syndrome
R269 T529 T534 prep In,investigated
R270 T530 T531 det this,work
R271 T531 T529 pobj work,In
R272 T532 T534 punct ",",investigated
R273 T533 T534 nsubj we,investigated
R274 T534 T534 ROOT investigated,investigated
R275 T535 T537 det the,mechanisms
R276 T536 T537 amod signaling,mechanisms
R277 T537 T534 dobj mechanisms,investigated
R278 T538 T537 acl controlled,mechanisms
R279 T539 T538 agent by,controlled
R280 T540 T543 det the,receptor
R281 T541 T542 amod necroptosis,mediator
R282 T542 T543 compound mediator,receptor
R283 T543 T539 pobj receptor,by
R284 T544 T543 acl interacting,receptor
R285 T545 T544 dobj protein-1,interacting
R286 T546 T545 punct (,protein-1
R287 T547 T545 appos RIP1,protein-1
R288 T548 T545 punct ),protein-1
R289 T549 T543 conj kinase,receptor
R290 T550 T534 punct .,investigated
R291 T551 T552 nsubj We,show
R292 T552 T552 ROOT show,show
R293 T553 T557 mark that,is
R294 T554 T556 compound Akt,activity
R295 T555 T556 compound kinase,activity
R296 T556 T557 nsubj activity,is
R297 T557 T552 ccomp is,show
R298 T558 T557 acomp critical,is
R299 T559 T558 prep for,critical
R300 T560 T559 pobj necroptosis,for
R301 T561 T557 prep in,is
R302 T562 T563 nummod L929,cells
R303 T563 T561 pobj cells,in
R304 T564 T557 cc and,is
R305 T565 T557 conj plays,is
R306 T566 T568 det a,role
R307 T567 T568 amod key,role
R308 T568 T565 dobj role,plays
R309 T569 T568 prep in,role

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T467 454-458 Protein denotes TNFα
T466 368-378 Protein denotes Akt kinase
T465 270-280 Regulation denotes controlled
T464 270-280 Regulation denotes controlled
T463 341-345 Protein denotes RIP1
T462 300-339 Protein denotes mediator receptor interacting protein-1
R216 T462 T464 themeOf mediator receptor interacting protein-1,controlled
R217 T463 T465 themeOf RIP1,controlled

test3

Id Subject Object Predicate Lexical cue
T47 454-458 Protein denotes TNFα
T46 446-450 Regulation denotes role
T45 341-345 Protein denotes RIP1
T44 309-339 Protein denotes receptor interacting protein-1
T43 270-280 Regulation denotes controlled
T33 454-458 Protein denotes TNFα
T32 341-345 Protein denotes RIP1
T31 309-339 Protein denotes receptor interacting protein-1
R8 T44 T43 causeOf receptor interacting protein-1,controlled
R9 T45 T44 equivalentTo RIP1,receptor interacting protein-1