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PMC:3585731 / 13293-13740 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T29386 339-343 Protein denotes bFGF
T29385 331-335 Protein denotes bFGF
T29384 167-171 Protein denotes bFGF
T29383 45-49 Protein denotes TNFα

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T29552 50-53 IN denotes for
T29630 436-446 NN denotes antibodies
T29629 426-435 JJ denotes indicated
T29628 422-425 DT denotes the
T29627 417-421 IN denotes with
T29626 412-416 NN denotes blot
T29625 404-411 JJ denotes western
T29624 401-403 IN denotes by
T29623 392-400 VB denotes followed
T29622 389-391 NN denotes hr
T29621 387-388 CD denotes 9
T29620 384-386 CC denotes or
T29619 380-383 NN denotes min
T29618 377-379 CD denotes 15
T29617 373-376 IN denotes for
T29616 371-372 -RRB- denotes )
T29615 361-371 NN denotes conditions
T29614 356-360 JJ denotes free
T29613 350-355 NN denotes serum
T29612 349-350 -LRB- denotes (
T29611 339-348 NN denotes bFGF/zVAD
T29610 336-338 CC denotes or
T29609 331-335 NN denotes bFGF
T29608 326-330 IN denotes with
T29607 315-325 VB denotes stimulated
T29606 309-314 NN denotes cells
T29605 305-308 DT denotes the
T29604 302-304 TO denotes to
T29603 296-301 VB denotes added
T29602 292-295 VB denotes was
T29601 286-291 NN denotes Nec-1
T29600 284-285 -RRB- denotes )
T29599 283-284 NN denotes D
T29598 282-283 -LRB- denotes (
T29597 276-281 NN denotes blot.
T29596 268-275 JJ denotes western
T29595 264-267 IN denotes for
T29594 257-263 NN denotes points
T29593 252-256 NN denotes time
T29592 242-251 VB denotes indicated
T29591 238-241 DT denotes the
T29590 235-237 IN denotes at
T29589 225-234 VB denotes collected
T29588 220-224 VB denotes were
T29587 212-219 NN denotes samples
T29586 208-211 CC denotes and
T29585 206-207 -RRB- denotes )
T29584 205-206 NN denotes C
T29583 203-204 -COMMA- denotes ,
T29582 193-203 NN denotes conditions
T29581 188-192 JJ denotes free
T29580 182-187 NN denotes serum
T29579 181-182 -LRB- denotes (
T29578 167-180 NN denotes bFGF/zVAD.fmk
T29577 164-166 CC denotes or
T29576 162-163 -RRB- denotes )
T29575 161-162 NN denotes B
T29574 160-161 -LRB- denotes (
T29573 151-159 NN denotes zVAD.fmk
T29572 146-150 IN denotes with
T29571 138-145 VB denotes treated
T29570 133-137 VB denotes were
T29569 127-132 NN denotes cells
T29568 122-126 NN denotes L929
T29567 120-121 -RRB- denotes )
T29566 119-120 NN denotes C
T29565 118-119 -COMMA- denotes ,
T29564 117-118 NN denotes B
T29563 116-117 -LRB- denotes (
T29562 104-115 NN denotes antibodies.
T29561 94-103 VB denotes indicated
T29560 89-93 IN denotes with
T29559 80-88 NN denotes blotting
T29558 72-79 JJ denotes western
T29557 69-71 IN denotes by
T29556 60-68 VB denotes followed
T29555 58-59 -COMMA- denotes ,
T29554 56-58 NN denotes hr
T29553 54-55 CD denotes 9
T29551 45-49 NN denotes TNFα
T29550 42-44 CC denotes or
T29549 33-41 NN denotes zVAD.fmk
T29548 28-32 IN denotes with
T29547 20-27 VB denotes treated
T29546 15-19 VB denotes were
T29545 9-14 NN denotes cells
T29544 4-8 NN denotes L929
T29543 2-3 -RRB- denotes )
T29542 1-2 NN denotes A
T29541 0-1 -LRB- denotes (
R20463 T29542 T29541 arg2Of A,(
R20464 T29543 T29541 arg3Of ),(
R20465 T29545 T29541 arg1Of cells,(
R20466 T29545 T29544 arg1Of cells,L929
R20467 T29545 T29546 arg1Of cells,were
R20468 T29545 T29547 arg2Of cells,treated
R20469 T29547 T29546 arg2Of treated,were
R20470 T29547 T29548 arg1Of treated,with
R20471 T29547 T29552 arg1Of treated,for
R20472 T29547 T29555 arg1Of treated,","
R20473 T29547 T29556 modOf treated,followed
R20474 T29549 T29550 arg1Of zVAD.fmk,or
R20475 T29550 T29548 arg2Of or,with
R20476 T29551 T29550 arg2Of TNFα,or
R20477 T29554 T29552 arg2Of hr,for
R20478 T29554 T29553 arg1Of hr,9
R20479 T29559 T29556 arg1Of blotting,followed
R20480 T29559 T29557 arg2Of blotting,by
R20481 T29559 T29558 arg1Of blotting,western
R20482 T29559 T29560 arg1Of blotting,with
R20483 T29562 T29560 arg2Of antibodies.,with
R20484 T29562 T29561 arg2Of antibodies.,indicated
R20485 T29564 T29563 arg2Of B,(
R20486 T29564 T29565 arg1Of B,","
R20487 T29564 T29566 arg1Of B,C
R20488 T29567 T29563 arg3Of ),(
R20489 T29569 T29568 arg1Of cells,L929
R20490 T29569 T29570 arg1Of cells,were
R20491 T29569 T29571 arg2Of cells,treated
R20492 T29571 T29570 arg2Of treated,were
R20493 T29571 T29572 arg1Of treated,with
R20494 T29573 T29574 arg1Of zVAD.fmk,(
R20495 T29573 T29577 arg1Of zVAD.fmk,or
R20496 T29575 T29574 arg2Of B,(
R20497 T29576 T29574 arg3Of ),(
R20498 T29577 T29572 arg2Of or,with
R20499 T29578 T29577 arg2Of bFGF/zVAD.fmk,or
R20500 T29578 T29579 arg1Of bFGF/zVAD.fmk,(
R20501 T29582 T29579 arg2Of conditions,(
R20502 T29582 T29580 arg1Of conditions,serum
R20503 T29582 T29581 arg1Of conditions,free
R20504 T29582 T29583 arg1Of conditions,","
R20505 T29584 T29583 arg2Of C,","
R20506 T29585 T29579 arg3Of ),(
R20507 T29587 T29588 arg1Of samples,were
R20508 T29587 T29589 arg2Of samples,collected
R20509 T29589 T29588 arg2Of collected,were
R20510 T29589 T29590 arg1Of collected,at
R20511 T29594 T29590 arg2Of points,at
R20512 T29594 T29591 arg1Of points,the
R20513 T29594 T29592 arg2Of points,indicated
R20514 T29594 T29593 arg1Of points,time
R20515 T29594 T29595 arg1Of points,for
R20516 T29597 T29595 arg2Of blot.,for
R20517 T29597 T29596 arg1Of blot.,western
R20518 T29597 T29598 arg1Of blot.,(
R20519 T29599 T29598 arg2Of D,(
R20520 T29600 T29598 arg3Of ),(
R20521 T29601 T29602 arg1Of Nec-1,was
R20522 T29601 T29603 arg2Of Nec-1,added
R20523 T29603 T29602 arg2Of added,was
R20524 T29603 T29604 arg1Of added,to
R20525 T29606 T29604 arg2Of cells,to
R20526 T29606 T29605 arg1Of cells,the
R20527 T29606 T29607 arg2Of cells,stimulated
R20528 T29607 T29608 arg1Of stimulated,with
R20529 T29607 T29617 arg1Of stimulated,for
R20530 T29607 T29623 modOf stimulated,followed
R20531 T29609 T29610 arg1Of bFGF,or
R20532 T29610 T29608 arg2Of or,with
R20533 T29610 T29612 arg1Of or,(
R20534 T29611 T29610 arg2Of bFGF/zVAD,or
R20535 T29615 T29612 arg2Of conditions,(
R20536 T29615 T29613 arg1Of conditions,serum
R20537 T29615 T29614 arg1Of conditions,free
R20538 T29616 T29612 arg3Of ),(
R20539 T29619 T29618 arg1Of min,15
R20540 T29619 T29620 arg1Of min,or
R20541 T29620 T29617 arg2Of or,for
R20542 T29622 T29620 arg2Of hr,or
R20543 T29622 T29621 arg1Of hr,9
R20544 T29626 T29623 arg1Of blot,followed
R20545 T29626 T29624 arg2Of blot,by
R20546 T29626 T29625 arg1Of blot,western
R20547 T29626 T29627 arg1Of blot,with
R20548 T29630 T29627 arg2Of antibodies,with
R20549 T29630 T29628 arg1Of antibodies,the
R20550 T29630 T29629 arg1Of antibodies,indicated

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T29413 339-343 Protein denotes bFGF
T29412 331-335 Protein denotes bFGF
T29411 167-171 Protein denotes bFGF
T29410 45-49 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T29656 339-343 http://www.uniprot.org/uniprot/Q788Q8 denotes bFGF
T29655 331-335 http://www.uniprot.org/uniprot/Q788Q8 denotes bFGF
T29654 167-171 http://www.uniprot.org/uniprot/Q788Q8 denotes bFGF
T29653 45-49 http://www.uniprot.org/uniprot/P01375 denotes TNFα

UBERON-AE

Id Subject Object Predicate Lexical cue
T29401 350-355 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum
T29400 182-187 http://purl.obolibrary.org/obo/UBERON_0001977 denotes serum

GO-MF

Id Subject Object Predicate Lexical cue
T29420 436-446 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies
T29419 104-114 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies

GO-CC

Id Subject Object Predicate Lexical cue
T29427 436-446 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T29426 104-114 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T29425 436-446 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T29424 104-114 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T29423 309-314 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T29422 127-132 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T29421 9-14 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T29403 0-447 Sentence denotes (A) L929 cells were treated with zVAD.fmk or TNFα for 9 hr, followed by western blotting with indicated antibodies. (B,C) L929 cells were treated with zVAD.fmk (B) or bFGF/zVAD.fmk (serum free conditions, C) and samples were collected at the indicated time points for western blot. (D) Nec-1 was added to the cells stimulated with bFGF or bFGF/zVAD (serum free conditions) for 15 min or 9 hr followed by western blot with the indicated antibodies.
T87 0-447 Sentence denotes (A) L929 cells were treated with zVAD.fmk or TNFα for 9 hr, followed by western blotting with indicated antibodies. (B,C) L929 cells were treated with zVAD.fmk (B) or bFGF/zVAD.fmk (serum free conditions, C) and samples were collected at the indicated time points for western blot. (D) Nec-1 was added to the cells stimulated with bFGF or bFGF/zVAD (serum free conditions) for 15 min or 9 hr followed by western blot with the indicated antibodies.

simple1

Id Subject Object Predicate Lexical cue
T29437 339-343 Protein denotes bFGF
T29436 331-335 Protein denotes bFGF
T29435 167-171 Protein denotes bFGF
T29434 45-49 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T29646 339-343 Protein denotes bFGF
T29645 331-335 Protein denotes bFGF
T29644 167-171 Protein denotes bFGF
T29643 45-49 Protein denotes TNFα

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T29675 339-343 Protein denotes bFGF
T29674 331-335 Protein denotes bFGF
T29673 167-171 Protein denotes bFGF
T29672 45-49 Protein denotes TNFα

DLUT931

Id Subject Object Predicate Lexical cue
T29661 339-343 Protein denotes bFGF
T29660 331-335 Protein denotes bFGF
T29659 167-171 Protein denotes bFGF
T29658 45-49 Protein denotes TNFα

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T29716 286-291 Protein denotes Nec-1
T29715 339-343 Protein denotes bFGF
T29714 45-88 Protein denotes TNFα for 9 hr, followed by western blotting
T29713 331-335 Protein denotes bFGF
T29712 151-163 Entity denotes zVAD.fmk (B)
T29711 104-114 Entity denotes antibodies
T29710 172-180 Entity denotes zVAD.fmk
T29708 33-41 Entity denotes zVAD.fmk
T29704 167-171 Protein denotes bFGF
T29703 436-446 Entity denotes antibodies
T29702 302-343 Entity denotes to the cells stimulated with bFGF or bFGF

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T29641 446-447 . denotes .
T29640 436-446 NNS denotes antibodies
T29639 426-435 VBN denotes indicated
T29638 422-425 DT denotes the
T29637 417-421 IN denotes with
T29636 412-416 NN denotes blot
T29635 404-411 JJ denotes western
T29634 401-403 IN denotes by
T29633 392-400 VBN denotes followed
T29632 389-391 NN denotes hr
T29631 387-388 CD denotes 9
T29531 384-386 CC denotes or
T29530 380-383 NN denotes min
T29529 377-379 CD denotes 15
T29528 373-376 IN denotes for
T29527 371-372 -RRB- denotes )
T29526 361-371 NNS denotes conditions
T29525 356-360 JJ denotes free
T29524 350-355 NN denotes serum
T29523 349-350 -LRB- denotes (
T29522 339-348 NNP denotes bFGF/zVAD
T29521 336-338 CC denotes or
T29520 331-335 NNP denotes bFGF
T29519 326-330 IN denotes with
T29518 315-325 VBN denotes stimulated
T29517 309-314 NNS denotes cells
T29516 305-308 DT denotes the
T29515 302-304 TO denotes to
T29514 296-301 VBN denotes added
T29513 292-295 VBD denotes was
T29512 286-291 NN denotes Nec-1
T29511 284-285 -RRB- denotes )
T29510 283-284 NNP denotes D
T29509 282-283 -LRB- denotes (
T29508 280-281 . denotes .
T29507 276-280 NN denotes blot
T29506 268-275 JJ denotes western
T29505 264-267 IN denotes for
T29504 257-263 NNS denotes points
T29503 252-256 NN denotes time
T29502 242-251 JJ denotes indicated
T29501 238-241 DT denotes the
T29500 235-237 IN denotes at
T29499 225-234 VBN denotes collected
T29498 220-224 VBD denotes were
T29497 212-219 NNS denotes samples
T29496 208-211 CC denotes and
T29495 206-207 -RRB- denotes )
T29494 205-206 NNP denotes C
T29493 203-204 , denotes ,
T29492 193-203 NNS denotes conditions
T29491 188-192 JJ denotes free
T29490 182-187 NN denotes serum
T29489 181-182 -LRB- denotes (
T29488 177-180 NN denotes fmk
T29487 176-177 . denotes .
T29486 167-176 NNP denotes bFGF/zVAD
T29485 164-166 CC denotes or
T29484 162-163 -RRB- denotes )
T29483 161-162 NNP denotes B
T29482 160-161 -LRB- denotes (
T29481 151-159 NNP denotes zVAD.fmk
T29480 146-150 IN denotes with
T29479 138-145 VBN denotes treated
T29478 133-137 VBD denotes were
T29477 127-132 NNS denotes cells
T29476 122-126 NNP denotes L929
T29475 120-121 -RRB- denotes )
T29474 119-120 NNP denotes C
T29473 118-119 , denotes ,
T29472 117-118 NNP denotes B
T29471 116-117 -LRB- denotes (
T29470 114-115 . denotes .
T29469 104-114 NNS denotes antibodies
T29468 94-103 JJ denotes indicated
T29467 89-93 IN denotes with
T29466 80-88 VBG denotes blotting
T29465 72-79 JJ denotes western
T29464 69-71 IN denotes by
T29463 60-68 VBN denotes followed
T29462 58-59 , denotes ,
T29461 56-58 NN denotes hr
T29460 54-55 CD denotes 9
T29459 50-53 IN denotes for
T29458 45-49 NNP denotes TNFα
T29457 42-44 CC denotes or
T29456 33-41 NNP denotes zVAD.fmk
T29455 28-32 IN denotes with
T29454 20-27 VBN denotes treated
T29453 15-19 VBD denotes were
T29452 9-14 NNS denotes cells
T29451 4-8 NNP denotes L929
T29450 2-3 -RRB- denotes )
T29449 1-2 NNP denotes A
T29448 0-1 -LRB- denotes (
R20371 T29448 T29454 punct (,treated
R20372 T29449 T29452 nmod A,cells
R20373 T29450 T29449 punct ),A
R20374 T29451 T29452 compound L929,cells
R20375 T29452 T29454 nsubjpass cells,treated
R20376 T29453 T29454 auxpass were,treated
R20377 T29454 T29454 ROOT treated,treated
R20378 T29455 T29454 prep with,treated
R20379 T29456 T29455 pobj zVAD.fmk,with
R20380 T29457 T29456 cc or,zVAD.fmk
R20381 T29458 T29456 conj TNFα,zVAD.fmk
R20382 T29459 T29454 prep for,treated
R20383 T29460 T29461 nummod 9,hr
R20384 T29461 T29459 pobj hr,for
R20385 T29462 T29454 punct ",",treated
R20386 T29463 T29454 advcl followed,treated
R20387 T29464 T29463 agent by,followed
R20388 T29465 T29466 amod western,blotting
R20389 T29466 T29464 pobj blotting,by
R20390 T29467 T29466 prep with,blotting
R20391 T29468 T29469 amod indicated,antibodies
R20392 T29469 T29467 pobj antibodies,with
R20393 T29470 T29454 punct .,treated
R20394 T29471 T29474 punct (,C
R20395 T29472 T29474 nmod B,C
R20396 T29473 T29474 punct ",",C
R20397 T29474 T29474 ROOT C,C
R20398 T29475 T29474 punct ),C
R20399 T29476 T29477 compound L929,cells
R20400 T29477 T29479 nsubjpass cells,treated
R20401 T29478 T29479 auxpass were,treated
R20402 T29479 T29479 ROOT treated,treated
R20403 T29480 T29479 prep with,treated
R20404 T29481 T29480 pobj zVAD.fmk,with
R20405 T29482 T29483 punct (,B
R20406 T29483 T29481 appos B,zVAD.fmk
R20407 T29484 T29481 punct ),zVAD.fmk
R20408 T29485 T29481 cc or,zVAD.fmk
R20409 T29486 T29481 conj bFGF/zVAD,zVAD.fmk
R20410 T29487 T29479 punct .,treated
R20411 T29488 T29492 amod fmk,conditions
R20412 T29489 T29492 punct (,conditions
R20413 T29490 T29492 nmod serum,conditions
R20414 T29491 T29492 amod free,conditions
R20415 T29492 T29499 nsubjpass conditions,collected
R20416 T29493 T29492 punct ",",conditions
R20417 T29494 T29492 appos C,conditions
R20418 T29495 T29494 punct ),C
R20419 T29496 T29492 cc and,conditions
R20420 T29497 T29492 conj samples,conditions
R20421 T29498 T29499 auxpass were,collected
R20422 T29499 T29499 ROOT collected,collected
R20423 T29500 T29499 prep at,collected
R20424 T29501 T29503 det the,time
R20425 T29502 T29503 amod indicated,time
R20426 T29503 T29500 pobj time,at
R20427 T29504 T29500 pobj points,at
R20428 T29505 T29504 prep for,points
R20429 T29506 T29507 amod western,blot
R20430 T29507 T29505 pobj blot,for
R20431 T29508 T29499 punct .,collected
R20432 T29509 T29514 punct (,added
R20433 T29510 T29512 amod D,Nec-1
R20434 T29511 T29512 punct ),Nec-1
R20435 T29512 T29514 nsubjpass Nec-1,added
R20436 T29513 T29514 auxpass was,added
R20437 T29514 T29514 ROOT added,added
R20438 T29515 T29514 prep to,added
R20439 T29516 T29517 det the,cells
R20440 T29517 T29515 pobj cells,to
R20441 T29518 T29517 acl stimulated,cells
R20442 T29519 T29518 prep with,stimulated
R20443 T29520 T29519 pobj bFGF,with
R20444 T29521 T29520 cc or,bFGF
R20445 T29522 T29520 conj bFGF/zVAD,bFGF
R20446 T29523 T29526 punct (,conditions
R20447 T29524 T29526 nmod serum,conditions
R20448 T29525 T29526 amod free,conditions
R20449 T29526 T29522 parataxis conditions,bFGF/zVAD
R20450 T29527 T29526 punct ),conditions
R20451 T29528 T29518 prep for,stimulated
R20452 T29529 T29632 nummod 15,hr
R20453 T29530 T29632 nmod min,hr
R20454 T29531 T29530 cc or,min
R20551 T29631 T29530 nummod 9,min
R20552 T29632 T29528 pobj hr,for
R20553 T29633 T29632 acl followed,hr
R20554 T29634 T29633 agent by,followed
R20555 T29635 T29636 amod western,blot
R20556 T29636 T29634 pobj blot,by
R20557 T29637 T29636 prep with,blot
R20558 T29638 T29640 det the,antibodies
R20559 T29639 T29640 amod indicated,antibodies
R20560 T29640 T29637 pobj antibodies,with
R20561 T29641 T29514 punct .,added

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T29689 339-348 Protein denotes bFGF/zVAD
T29688 331-335 Protein denotes bFGF
T29687 167-180 Protein denotes bFGF/zVAD.fmk
T29686 45-49 Protein denotes TNFα
T29685 33-41 Protein denotes zVAD.fmk

test3

Id Subject Object Predicate Lexical cue
T29398 331-335 Protein denotes bFGF
T29397 167-171 Protein denotes bFGF
T29396 45-49 Protein denotes TNFα
T29393 339-343 Protein denotes bFGF
T29392 331-335 Protein denotes bFGF
T29391 167-171 Protein denotes bFGF
T29390 45-49 Protein denotes TNFα
T29399 339-343 Protein denotes bFGF