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PMC:3585731 / 1312-1799 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
23469174-20010783-90505392 151-152 20010783 denotes 1
23469174-21773880-90505393 406-407 21773880 denotes 2
23469174-21749897-90505394 411-412 21749897 denotes 3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1101 150-151 -LRB- denotes [
T1100 141-149 NN denotes necrosis
T1099 138-140 IN denotes of
T1098 128-137 NN denotes hallmarks
T1097 122-127 JJ denotes major
T1096 118-121 DT denotes the
T1095 114-117 PDT denotes all
T1094 105-113 VB denotes displays
T1093 100-104 WDT denotes that
T1092 94-99 NN denotes death
T1091 89-93 NN denotes cell
T1090 79-88 VB denotes regulated
T1089 76-78 IN denotes of
T1088 71-75 NN denotes form
T1087 69-70 DT denotes a
T1086 66-68 VB denotes is
T1085 54-65 NN denotes Necroptosis
T1161 485-487 IN denotes of
T1160 478-484 NN denotes models
T1159 475-477 TO denotes to
T1158 463-474 NN denotes necroptosis
T1157 456-462 VB denotes linked
T1156 451-455 VB denotes have
T1155 443-450 NN denotes studies
T1154 436-442 JJ denotes recent
T1153 428-435 JJ denotes several
T1152 426-427 -COMMA- denotes ,
T1151 415-426 RB denotes Importantly
T1150 412-413 -RRB- denotes ]
T1149 411-412 CD denotes 3
T1148 410-411 -LRB- denotes [
T1147 408-409 -COMMA- denotes ,
T1146 407-408 -RRB- denotes ]
T1145 406-407 CD denotes 2
T1144 405-406 -LRB- denotes [
T1143 397-404 NN denotes disease
T1142 384-396 NNP denotes Huntington’s
T1141 380-383 CC denotes and
T1140 378-379 -COMMA- denotes ,
T1139 368-378 NN denotes detachment
T1138 360-367 JJ denotes retinal
T1137 358-359 -COMMA- denotes ,
T1136 352-358 NN denotes trauma
T1135 346-351 NN denotes brain
T1134 344-345 -COMMA- denotes ,
T1133 332-344 NN denotes pancreatitis
T1132 326-331 JJ denotes acute
T1131 324-325 -COMMA- denotes ,
T1130 318-324 NN denotes injury
T1129 297-317 NN denotes ischemia-reperfusion
T1128 289-296 JJ denotes retinal
T1127 285-288 CC denotes and
T1126 279-284 NN denotes heart
T1125 277-278 -COMMA- denotes ,
T1124 272-277 NN denotes brain
T1123 262-271 VB denotes including
T1122 260-261 -COMMA- denotes ,
T1121 253-260 NN denotes disease
T1120 247-252 JJ denotes human
T1119 244-246 IN denotes of
T1118 237-243 NN denotes models
T1117 230-236 NN denotes animal
T1116 227-229 IN denotes of
T1115 221-226 NN denotes range
T1114 216-220 JJ denotes wide
T1113 214-215 DT denotes a
T1112 211-213 IN denotes in
T1111 199-210 NN denotes necroptosis
T1110 188-198 VB denotes implicated
T1109 183-187 VB denotes have
T1108 175-182 NN denotes studies
T1107 172-174 IN denotes of
T1106 165-171 NN denotes number
T1105 157-164 VB denotes growing
T1104 155-156 DT denotes A
T1103 152-153 -RRB- denotes ]
T1102 151-152 CD denotes 1
T352 28-38 NN denotes regulation
T351 15-27 JJ denotes inflammatory
T350 11-14 CC denotes and
T349 5-10 NN denotes death
T348 0-4 NN denotes cell
R205 T349 T348 arg1Of death,cell
R206 T349 T350 arg1Of death,and
R209 T352 T350 arg2Of regulation,and
R210 T352 T351 arg1Of regulation,inflammatory
R525 T1085 T1086 arg1Of Necroptosis,is
R526 T1088 T1086 arg2Of form,is
R527 T1088 T1087 arg1Of form,a
R528 T1088 T1089 arg1Of form,of
R529 T1088 T1093 arg1Of form,that
R530 T1088 T1094 arg1Of form,displays
R531 T1092 T1089 arg2Of death,of
R532 T1092 T1090 arg2Of death,regulated
R533 T1092 T1091 arg1Of death,cell
R534 T1094 T1101 arg1Of displays,[
R535 T1098 T1094 arg2Of hallmarks,displays
R536 T1098 T1095 arg1Of hallmarks,all
R537 T1098 T1096 arg1Of hallmarks,the
R538 T1098 T1097 arg1Of hallmarks,major
R539 T1098 T1099 arg1Of hallmarks,of
R540 T1100 T1099 arg2Of necrosis,of
R541 T1102 T1101 arg2Of 1,[
R542 T1103 T1101 arg3Of ],[
R543 T1106 T1104 arg1Of number,A
R544 T1106 T1105 arg1Of number,growing
R545 T1106 T1107 arg1Of number,of
R546 T1106 T1109 arg1Of number,have
R547 T1106 T1110 arg1Of number,implicated
R548 T1108 T1107 arg2Of studies,of
R549 T1110 T1109 arg2Of implicated,have
R550 T1110 T1112 arg1Of implicated,in
R551 T1110 T1147 arg1Of implicated,","
R552 T1110 T1148 arg1Of implicated,[
R553 T1111 T1110 arg2Of necroptosis,implicated
R554 T1115 T1114 arg1Of range,wide
R555 T1115 T1116 arg1Of range,of
R556 T1115 T1141 arg1Of range,and
R557 T1118 T1116 arg2Of models,of
R558 T1118 T1117 arg1Of models,animal
R559 T1118 T1119 arg1Of models,of
R560 T1118 T1122 arg1Of models,","
R561 T1118 T1123 arg1Of models,including
R562 T1121 T1119 arg2Of disease,of
R563 T1121 T1120 arg1Of disease,human
R564 T1124 T1125 arg1Of brain,","
R565 T1125 T1127 arg1Of ",",and
R566 T1126 T1125 arg2Of heart,","
R567 T1127 T1131 arg1Of and,","
R568 T1130 T1127 arg2Of injury,and
R569 T1130 T1128 arg1Of injury,retinal
R570 T1130 T1129 arg1Of injury,ischemia-reperfusion
R571 T1131 T1134 arg1Of ",",","
R572 T1133 T1131 arg2Of pancreatitis,","
R573 T1133 T1132 arg1Of pancreatitis,acute
R574 T1134 T1137 arg1Of ",",","
R575 T1136 T1134 arg2Of trauma,","
R576 T1136 T1135 arg1Of trauma,brain
R577 T1137 T1123 arg2Of ",",including
R578 T1139 T1137 arg2Of detachment,","
R579 T1139 T1138 arg1Of detachment,retinal
R580 T1141 T1112 arg2Of and,in
R581 T1141 T1113 arg1Of and,a
R582 T1141 T1140 arg1Of and,","
R583 T1143 T1141 arg2Of disease,and
R584 T1143 T1142 arg1Of disease,Huntington’s
R585 T1143 T1144 arg1Of disease,[
R586 T1145 T1144 arg2Of 2,[
R587 T1146 T1144 arg3Of ],[
R588 T1149 T1148 arg2Of 3,[
R589 T1150 T1148 arg3Of ],[
R590 T1155 T1153 arg1Of studies,several
R591 T1155 T1154 arg1Of studies,recent
R592 T1155 T1156 arg1Of studies,have
R593 T1155 T1157 arg1Of studies,linked
R594 T1157 T1151 arg1Of linked,Importantly
R595 T1157 T1152 arg1Of linked,","
R596 T1157 T1156 arg2Of linked,have
R601 T1158 T1157 arg2Of necroptosis,linked
R602 T1158 T1159 arg1Of necroptosis,to
R603 T1160 T1159 arg2Of models,to
R604 T1160 T1161 arg1Of models,of

UBERON-AE

Id Subject Object Predicate Lexical cue
T877 279-284 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T876 346-351 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T875 272-277 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain

GO-BP

Id Subject Object Predicate Lexical cue
T1007 141-149 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis
T1004 141-149 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T1001 141-149 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis
T996 94-99 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T972 463-474 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T971 199-210 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T970 54-65 http://purl.obolibrary.org/obo/GO_0097528 denotes Necroptosis
T953 463-474 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T952 199-210 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T951 54-65 http://purl.obolibrary.org/obo/GO_0070266 denotes Necroptosis
T134 28-38 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T123 5-10 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T120 0-10 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T993 141-149 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T990 89-99 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T989 79-99 http://purl.obolibrary.org/obo/GO_0012501 denotes regulated cell death

GO-CC

Id Subject Object Predicate Lexical cue
T140 0-4 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1058 89-93 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T881 155-414 Sentence denotes A growing number of studies have implicated necroptosis in a wide range of animal models of human disease, including brain, heart and retinal ischemia-reperfusion injury, acute pancreatitis, brain trauma, retinal detachment, and Huntington’s disease [2], [3].
T880 54-154 Sentence denotes Necroptosis is a form of regulated cell death that displays all the major hallmarks of necrosis [1].
T13 41-53 Sentence denotes Introduction
T14 54-154 Sentence denotes Necroptosis is a form of regulated cell death that displays all the major hallmarks of necrosis [1].
T15 155-414 Sentence denotes A growing number of studies have implicated necroptosis in a wide range of animal models of human disease, including brain, heart and retinal ischemia-reperfusion injury, acute pancreatitis, brain trauma, retinal detachment, and Huntington’s disease [2], [3].

ICD10

Id Subject Object Predicate Lexical cue
T1057 384-404 http://purl.bioontology.org/ontology/ICD10/G10 denotes Huntington’s disease
T1056 326-344 http://purl.bioontology.org/ontology/ICD10/K85 denotes acute pancreatitis
T1055 318-324 http://purl.bioontology.org/ontology/ICD10/T14.9 denotes injury

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T2805 456-474 Binding denotes linked necroptosis
T2758 289-396 Entity denotes retinal ischemia-reperfusion injury, acute pancreatitis, brain trauma, retinal detachment, and Huntington’s

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1980 485-487 IN denotes of
T1979 478-484 NNS denotes models
T1978 475-477 TO denotes to
T1977 463-474 NN denotes necroptosis
T1976 456-462 VBN denotes linked
T1975 451-455 VBP denotes have
T1974 443-450 NNS denotes studies
T1973 436-442 JJ denotes recent
T1972 428-435 JJ denotes several
T1971 426-427 , denotes ,
T1970 415-426 RB denotes Importantly
T1969 413-414 . denotes .
T1968 412-413 NNP denotes ]
T1967 411-412 CD denotes 3
T1966 410-411 NNP denotes [
T1965 408-409 , denotes ,
T1964 407-408 NNP denotes ]
T1963 406-407 CD denotes 2
T1962 405-406 NN denotes [
T1961 397-404 NN denotes disease
T1960 384-394 NNP denotes Huntington
T1959 380-383 CC denotes and
T1958 378-379 , denotes ,
T1957 368-378 NN denotes detachment
T1956 360-367 JJ denotes retinal
T1955 358-359 , denotes ,
T1954 352-358 NN denotes trauma
T1953 346-351 NN denotes brain
T1952 344-345 , denotes ,
T1951 332-344 NN denotes pancreatitis
T1950 326-331 JJ denotes acute
T1949 324-325 , denotes ,
T1948 318-324 NN denotes injury
T1947 297-317 NN denotes ischemia-reperfusion
T1946 289-296 JJ denotes retinal
T1945 285-288 CC denotes and
T1944 279-284 NN denotes heart
T1943 277-278 , denotes ,
T1942 272-277 NN denotes brain
T1941 262-271 VBG denotes including
T1940 260-261 , denotes ,
T1939 253-260 NN denotes disease
T1938 247-252 JJ denotes human
T1937 244-246 IN denotes of
T1936 237-243 NNS denotes models
T1935 230-236 NN denotes animal
T1934 227-229 IN denotes of
T1933 221-226 NN denotes range
T1932 216-220 JJ denotes wide
T1931 214-215 DT denotes a
T1930 211-213 IN denotes in
T1929 199-210 NN denotes necroptosis
T1928 188-198 VBN denotes implicated
T1927 183-187 VBP denotes have
T1926 175-182 NNS denotes studies
T1925 172-174 IN denotes of
T1924 165-171 NN denotes number
T1923 157-164 VBG denotes growing
T1922 155-156 DT denotes A
T1921 153-154 . denotes .
T1920 152-153 NNP denotes ]
T1919 151-152 CD denotes 1
T1918 150-151 NN denotes [
T1917 141-149 NN denotes necrosis
T1916 138-140 IN denotes of
T1915 128-137 NNS denotes hallmarks
T1914 122-127 JJ denotes major
T1913 118-121 DT denotes the
T1912 114-117 PDT denotes all
T1911 105-113 VBZ denotes displays
T1910 100-104 WDT denotes that
T1909 94-99 NN denotes death
T1908 89-93 NN denotes cell
T1907 79-88 JJ denotes regulated
T1906 76-78 IN denotes of
T1905 71-75 NN denotes form
T1904 69-70 DT denotes a
T1903 66-68 VBZ denotes is
T1902 54-65 NNP denotes Necroptosis
T694 28-38 NN denotes regulation
T695 38-39 . denotes .
T690 0-4 NN denotes cell
T691 5-10 NN denotes death
T692 11-14 CC denotes and
T693 15-27 JJ denotes inflammatory
R489 T690 T691 compound cell,death
R491 T692 T691 cc and,death
R492 T693 T694 amod inflammatory,regulation
R493 T694 T691 conj regulation,death
R1230 T1902 T1903 nsubj Necroptosis,is
R1231 T1903 T1903 ROOT is,is
R1232 T1904 T1905 det a,form
R1233 T1905 T1903 attr form,is
R1234 T1906 T1905 prep of,form
R1235 T1907 T1909 amod regulated,death
R1236 T1908 T1909 compound cell,death
R1237 T1909 T1906 pobj death,of
R1238 T1910 T1911 nsubj that,displays
R1239 T1911 T1905 relcl displays,form
R1240 T1912 T1915 predet all,hallmarks
R1241 T1913 T1915 det the,hallmarks
R1242 T1914 T1915 amod major,hallmarks
R1243 T1915 T1911 dobj hallmarks,displays
R1244 T1916 T1915 prep of,hallmarks
R1245 T1917 T1918 compound necrosis,[
R1246 T1918 T1916 pobj [,of
R1247 T1919 T1918 nummod 1,[
R1248 T1920 T1915 conj ],hallmarks
R1249 T1921 T1903 punct .,is
R1250 T1922 T1924 det A,number
R1251 T1923 T1924 amod growing,number
R1252 T1924 T1928 nsubj number,implicated
R1253 T1925 T1924 prep of,number
R1254 T1926 T1925 pobj studies,of
R1255 T1927 T1928 aux have,implicated
R1256 T1928 T1928 ROOT implicated,implicated
R1257 T1929 T1928 dobj necroptosis,implicated
R1258 T1930 T1928 prep in,implicated
R1259 T1931 T1933 det a,range
R1260 T1932 T1933 amod wide,range
R1261 T1933 T1930 pobj range,in
R1262 T1934 T1933 prep of,range
R1263 T1935 T1936 compound animal,models
R1264 T1936 T1934 pobj models,of
R1265 T1937 T1936 prep of,models
R1266 T1938 T1939 amod human,disease
R1267 T1939 T1937 pobj disease,of
R1268 T1940 T1936 punct ",",models
R1269 T1941 T1936 prep including,models
R1270 T1942 T1941 pobj brain,including
R1271 T1943 T1942 punct ",",brain
R1272 T1944 T1942 conj heart,brain
R1273 T1945 T1944 cc and,heart
R1274 T1946 T1947 amod retinal,ischemia-reperfusion
R1275 T1947 T1944 conj ischemia-reperfusion,heart
R1276 T1948 T1944 conj injury,heart
R1277 T1949 T1948 punct ",",injury
R1278 T1950 T1951 amod acute,pancreatitis
R1279 T1951 T1948 conj pancreatitis,injury
R1280 T1952 T1951 punct ",",pancreatitis
R1281 T1953 T1954 compound brain,trauma
R1282 T1954 T1951 conj trauma,pancreatitis
R1283 T1955 T1954 punct ",",trauma
R1284 T1956 T1957 amod retinal,detachment
R1285 T1957 T1954 conj detachment,trauma
R1286 T1958 T1957 punct ",",detachment
R1287 T1959 T1942 cc and,brain
R1288 T1960 T1961 poss Huntington,disease
R1289 T1961 T1962 nsubj disease,[
R1290 T1962 T1942 conj [,brain
R1291 T1963 T1964 nummod 2,]
R1292 T1964 T1968 nmod ],]
R1293 T1965 T1964 punct ",",]
R1294 T1966 T1964 appos [,]
R1295 T1967 T1968 nummod 3,]
R1296 T1968 T1962 appos ],[
R1297 T1969 T1928 punct .,implicated
R1298 T1970 T1976 advmod Importantly,linked
R1299 T1971 T1976 punct ",",linked
R1300 T1972 T1974 amod several,studies
R1301 T1973 T1974 amod recent,studies
R1302 T1974 T1976 nsubj studies,linked
R1303 T1975 T1976 aux have,linked
R1305 T1976 T1976 ROOT linked,linked
R1308 T1977 T1976 dobj necroptosis,linked
R1312 T1978 T1976 prep to,linked
R1316 T1979 T1978 pobj models,to
R1320 T1980 T1979 prep of,models

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T486 28-38 Regulation denotes regulation