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PMC:3585731 / 12679-12834 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T5110 88-103 Phosphorylation denotes phosphorylation
T5109 72-80 Positive_regulation denotes increase
T5068 46-50 Protein denotes TNFα
R3501 T5068 T5109 causeOf TNFα,increase
R3519 T5110 T5109 themeOf phosphorylation,increase

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5943 153-154 -RRB- denotes )
T5942 151-153 NN denotes 3A
T5941 146-150 NN denotes Fig.
T5940 145-146 -LRB- denotes (
T5939 138-144 NN denotes Thr308
T5938 136-137 -COMMA- denotes ,
T5937 132-136 NN denotes site
T5936 121-131 NN denotes activation
T5935 115-120 JJ denotes major
T5934 109-114 JJ denotes known
T5933 107-108 DT denotes a
T5932 104-106 IN denotes at
T5931 88-103 NN denotes phosphorylation
T5930 84-87 NN denotes Akt
T5929 81-83 IN denotes in
T5928 72-80 NN denotes increase
T5927 65-71 JJ denotes robust
T5926 63-64 DT denotes a
T5925 54-62 VB denotes observed
T5924 51-53 PRP denotes we
T5923 46-50 NN denotes TNFα
T5922 43-45 CC denotes or
T5921 34-42 NN denotes zVAD.fmk
T5920 27-33 CC denotes either
T5919 22-26 IN denotes with
T5918 10-21 NN denotes stimulation
T5917 0-9 VB denotes Following
R3970 T5918 T5917 arg2Of stimulation,Following
R3971 T5918 T5919 arg1Of stimulation,with
R3972 T5921 T5922 arg1Of zVAD.fmk,or
R3973 T5922 T5919 arg2Of or,with
R3974 T5922 T5920 arg1Of or,either
R3975 T5923 T5922 arg2Of TNFα,or
R3976 T5924 T5925 arg1Of we,observed
R3977 T5925 T5917 arg1Of observed,Following
R3978 T5928 T5925 arg2Of increase,observed
R3979 T5928 T5926 arg1Of increase,a
R3980 T5928 T5927 arg1Of increase,robust
R3981 T5928 T5929 arg1Of increase,in
R3982 T5928 T5932 arg1Of increase,at
R3983 T5931 T5929 arg2Of phosphorylation,in
R3984 T5931 T5930 arg1Of phosphorylation,Akt
R3985 T5937 T5932 arg2Of site,at
R3986 T5937 T5933 arg1Of site,a
R3987 T5937 T5934 arg1Of site,known
R3988 T5937 T5935 arg1Of site,major
R3989 T5937 T5936 arg1Of site,activation
R3990 T5937 T5938 arg1Of site,","
R3991 T5939 T5938 arg2Of Thr308,","
R3992 T5939 T5940 arg1Of Thr308,(
R3993 T5942 T5940 arg2Of 3A,(
R3994 T5942 T5941 arg1Of 3A,Fig.
R3995 T5943 T5940 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T5379 46-50 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6532 46-50 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T6504 84-87 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T6476 84-87 http://www.uniprot.org/uniprot/P31751 denotes Akt
T6448 84-87 http://www.uniprot.org/uniprot/P31749 denotes Akt

GO-BP

Id Subject Object Predicate Lexical cue
T5464 88-103 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

sentences

Id Subject Object Predicate Lexical cue
T5293 0-155 Sentence denotes Following stimulation with either zVAD.fmk or TNFα we observed a robust increase in Akt phosphorylation at a known major activation site, Thr308 (Fig. 3A).
T82 0-155 Sentence denotes Following stimulation with either zVAD.fmk or TNFα we observed a robust increase in Akt phosphorylation at a known major activation site, Thr308 (Fig. 3A).

simple1

Id Subject Object Predicate Lexical cue
T5532 46-50 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T6391 46-50 Protein denotes TNFα

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T6672 46-50 Protein denotes TNFα

DLUT931

Id Subject Object Predicate Lexical cue
T6578 34-42 Positive_regulation denotes zVAD.fmk
T6552 46-50 Protein denotes TNFα
R4428 T6552 T6578 themeOf TNFα,zVAD.fmk

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T7299 0-103 Positive_regulation denotes Following stimulation with either zVAD.fmk or TNFα we observed a robust increase in Akt phosphorylation
T7286 81-103 Phosphorylation denotes in Akt phosphorylation
T7251 132-136 Entity denotes site
T7240 84-87 Protein denotes Akt
T7211 46-50 Protein denotes TNFα
T7198 34-42 Entity denotes zVAD.fmk
T7197 138-144 Entity denotes Thr308
R4753 T7240 T7286 themeOf Akt,in Akt phosphorylation
R4774 T7286 T7299 themeOf in Akt phosphorylation,Following stimulation with either zVAD.fmk or TNFα we observed a robust increase in Akt phosphorylation

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T6778 72-80 Positive_regulation denotes increase
T6777 88-103 Phosphorylation denotes phosphorylation
T6776 84-87 Protein denotes Akt
T6775 46-50 Protein denotes TNFα
T6774 34-42 Protein denotes zVAD.fmk
R4510 T6776 T6777 themeOf Akt,phosphorylation
R4512 T6777 T6778 themeOf phosphorylation,increase

test3

Id Subject Object Predicate Lexical cue
T5216 88-103 Phosphorylation denotes phosphorylation
T5215 72-80 Positive_regulation denotes increase
T5214 46-50 Protein denotes TNFα
T5164 46-50 Protein denotes TNFα
R3546 T5216 T5215 themeOf phosphorylation,increase