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PMC:3585731 / 12399-13175 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T5114 594-609 Phosphorylation denotes phosphorylation
T5113 578-586 Positive_regulation denotes increase
T5112 498-505 Regulation denotes changes
T5111 482-497 Phosphorylation denotes phosphorylation
T5110 368-383 Phosphorylation denotes phosphorylation
T5109 352-360 Positive_regulation denotes increase
T5108 113-128 Phosphorylation denotes phosphorylation
T5107 90-97 Regulation denotes changes
T5106 18-28 Positive_regulation denotes activation
T5071 674-679 Protein denotes c-Jun
T5070 630-633 Protein denotes p54
T5069 622-625 Protein denotes p46
T5068 326-330 Protein denotes TNFα
T5067 156-160 Protein denotes TNFα
R3500 T5067 T5108 themeOf TNFα,phosphorylation
R3501 T5068 T5109 causeOf TNFα,increase
R3502 T5069 T5114 themeOf p46,phosphorylation
R3503 T5070 T5114 themeOf p54,phosphorylation
R3504 T5071 T5114 themeOf c-Jun,phosphorylation
R3519 T5110 T5109 themeOf phosphorylation,increase
R3520 T5114 T5113 themeOf phosphorylation,increase

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T6001 765-775 NN denotes conditions
T6000 753-764 JJ denotes necroptotic
T5999 747-752 IN denotes under
T5998 737-746 VB denotes activated
T5997 733-736 VB denotes are
T5996 729-732 NN denotes JNK
T5995 725-728 CC denotes and
T5994 721-724 NN denotes Akt
T5993 716-720 CC denotes both
T5992 711-715 IN denotes that
T5991 702-710 VB denotes indicate
T5990 697-701 NN denotes data
T5989 691-696 DT denotes These
T5988 688-689 -RRB- denotes )
T5987 686-688 NN denotes 3A
T5986 681-685 NN denotes Fig.
T5985 680-681 -LRB- denotes (
T5984 674-679 NN denotes c-Jun
T5983 664-673 NN denotes substrate
T5982 658-663 JJ denotes major
T5981 654-657 PRP-DOLLAR- denotes its
T5980 650-653 CC denotes and
T5979 646-649 NN denotes JNK
T5978 643-645 IN denotes of
T5977 634-642 NN denotes isoforms
T5976 630-633 NN denotes p54
T5975 626-629 CC denotes and
T5974 622-625 NN denotes p46
T5973 618-621 DT denotes the
T5972 613-617 CC denotes both
T5971 610-612 IN denotes of
T5970 594-609 NN denotes phosphorylation
T5969 590-593 DT denotes the
T5968 587-589 IN denotes in
T5967 578-586 NN denotes increase
T5966 575-577 DT denotes an
T5965 566-574 VB denotes observed
T5964 561-565 RB denotes also
T5963 558-560 PRP denotes We
T5962 550-556 NN denotes Ser473
T5961 548-549 -COMMA- denotes ,
T5960 545-548 NN denotes Akt
T5959 542-544 IN denotes of
T5958 537-541 NN denotes site
T5957 526-536 NN denotes activation
T5956 520-525 JJ denotes major
T5955 513-519 JJ denotes second
T5954 509-512 DT denotes the
T5953 506-508 IN denotes in
T5952 498-505 NN denotes changes
T5951 482-497 NN denotes phosphorylation
T5950 470-481 JJ denotes concomitant
T5949 462-469 VB denotes observe
T5948 458-461 RB denotes not
T5947 454-457 VB denotes did
T5946 451-453 PRP denotes we
T5945 449-450 -COMMA- denotes ,
T5944 436-449 RB denotes Interestingly
T5943 433-434 -RRB- denotes )
T5942 431-433 NN denotes 3A
T5941 426-430 NN denotes Fig.
T5940 425-426 -LRB- denotes (
T5939 418-424 NN denotes Thr308
T5938 416-417 -COMMA- denotes ,
T5937 412-416 NN denotes site
T5936 401-411 NN denotes activation
T5935 395-400 JJ denotes major
T5934 389-394 JJ denotes known
T5933 387-388 DT denotes a
T5932 384-386 IN denotes at
T5931 368-383 NN denotes phosphorylation
T5930 364-367 NN denotes Akt
T5929 361-363 IN denotes in
T5928 352-360 NN denotes increase
T5927 345-351 JJ denotes robust
T5926 343-344 DT denotes a
T5925 334-342 VB denotes observed
T5924 331-333 PRP denotes we
T5923 326-330 NN denotes TNFα
T5922 323-325 CC denotes or
T5921 314-322 NN denotes zVAD.fmk
T5920 307-313 CC denotes either
T5919 302-306 IN denotes with
T5918 290-301 NN denotes stimulation
T5917 280-289 VB denotes Following
T5916 277-278 -RRB- denotes )
T5915 276-277 NN denotes B
T5914 274-275 -COMMA- denotes ,
T5913 271-274 NN denotes S3A
T5912 266-270 NNP denotes Fig.
T5911 265-266 -LRB- denotes (
T5910 258-264 NN denotes system
T5909 254-257 PRP-DOLLAR- denotes our
T5908 251-253 IN denotes in
T5907 245-250 NN denotes death
T5906 240-244 NN denotes cell
T5905 237-239 IN denotes of
T5904 231-236 NN denotes stage
T5903 225-230 JJ denotes early
T5902 221-224 DT denotes the
T5901 212-220 VB denotes reflects
T5900 209-211 PRP denotes it
T5899 201-208 IN denotes because
T5898 194-200 VB denotes chosen
T5897 190-193 VB denotes was
T5896 184-189 NN denotes point
T5895 179-183 NN denotes time
T5894 174-178 DT denotes This
T5893 161-172 NN denotes stimulation
T5892 156-160 NN denotes TNFα
T5891 152-155 CC denotes and
T5890 143-151 NN denotes zVAD.fmk
T5889 138-142 IN denotes post
T5888 134-137 NN denotes hrs
T5887 132-133 CD denotes 9
T5886 129-131 IN denotes at
T5885 113-128 NN denotes phosphorylation
T5884 109-112 NN denotes JNK
T5883 105-108 CC denotes and
T5882 101-104 NN denotes Akt
T5881 98-100 IN denotes in
T5880 90-97 NN denotes changes
T5879 86-89 DT denotes the
T5878 77-85 VB denotes examined
T5877 74-76 PRP denotes we
T5876 72-73 -COMMA- denotes ,
T5875 62-72 NN denotes conditions
T5874 50-61 JJ denotes necroptotic
T5873 44-49 IN denotes under
T5872 40-43 NN denotes JNK
T5871 36-39 CC denotes and
T5870 32-35 NN denotes Akt
T5869 29-31 IN denotes of
T5868 18-28 NN denotes activation
T5867 14-17 DT denotes the
T5866 3-13 VB denotes understand
T5865 0-2 TO denotes To
R3916 T5866 T5865 arg1Of understand,To
R3917 T5866 T5873 arg1Of understand,under
R3918 T5868 T5866 arg2Of activation,understand
R3919 T5868 T5867 arg1Of activation,the
R3920 T5868 T5869 arg1Of activation,of
R3921 T5870 T5871 arg1Of Akt,and
R3922 T5871 T5869 arg2Of and,of
R3923 T5872 T5871 arg2Of JNK,and
R3924 T5875 T5873 arg2Of conditions,under
R3925 T5875 T5874 arg1Of conditions,necroptotic
R3926 T5877 T5866 arg1Of we,understand
R3927 T5877 T5878 arg1Of we,examined
R3928 T5878 T5865 modOf examined,To
R3929 T5878 T5876 arg1Of examined,","
R3930 T5878 T5886 arg1Of examined,at
R3931 T5878 T5889 arg1Of examined,post
R3932 T5880 T5878 arg2Of changes,examined
R3933 T5880 T5879 arg1Of changes,the
R3934 T5880 T5881 arg1Of changes,in
R3935 T5882 T5883 arg1Of Akt,and
R3936 T5884 T5883 arg2Of JNK,and
R3937 T5885 T5881 arg2Of phosphorylation,in
R3938 T5885 T5882 arg1Of phosphorylation,Akt
R3939 T5885 T5884 arg1Of phosphorylation,JNK
R3940 T5888 T5886 arg2Of hrs,at
R3941 T5888 T5887 arg1Of hrs,9
R3942 T5890 T5891 arg1Of zVAD.fmk,and
R3943 T5892 T5891 arg2Of TNFα,and
R3944 T5893 T5889 arg2Of stimulation,post
R3945 T5893 T5890 arg1Of stimulation,zVAD.fmk
R3946 T5893 T5892 arg1Of stimulation,TNFα
R3947 T5895 T5894 arg1Of time,This
R3948 T5896 T5897 arg1Of point,was
R3949 T5896 T5898 arg2Of point,chosen
R3950 T5898 T5895 arg1Of chosen,time
R3951 T5898 T5897 arg2Of chosen,was
R3952 T5898 T5899 arg1Of chosen,because
R3953 T5900 T5901 arg1Of it,reflects
R3954 T5901 T5899 arg2Of reflects,because
R3955 T5904 T5901 arg2Of stage,reflects
R3956 T5904 T5902 arg1Of stage,the
R3957 T5904 T5903 arg1Of stage,early
R3958 T5904 T5905 arg1Of stage,of
R3959 T5904 T5908 arg1Of stage,in
R3960 T5907 T5905 arg2Of death,of
R3961 T5907 T5906 arg1Of death,cell
R3962 T5910 T5908 arg2Of system,in
R3963 T5910 T5909 arg1Of system,our
R3964 T5910 T5911 arg1Of system,(
R3965 T5913 T5911 arg2Of S3A,(
R3966 T5913 T5912 arg1Of S3A,Fig.
R3967 T5913 T5914 arg1Of S3A,","
R3968 T5915 T5914 arg2Of B,","
R3969 T5916 T5911 arg3Of ),(
R3970 T5918 T5917 arg2Of stimulation,Following
R3971 T5918 T5919 arg1Of stimulation,with
R3972 T5921 T5922 arg1Of zVAD.fmk,or
R3973 T5922 T5919 arg2Of or,with
R3974 T5922 T5920 arg1Of or,either
R3975 T5923 T5922 arg2Of TNFα,or
R3976 T5924 T5925 arg1Of we,observed
R3977 T5925 T5917 arg1Of observed,Following
R3978 T5928 T5925 arg2Of increase,observed
R3979 T5928 T5926 arg1Of increase,a
R3980 T5928 T5927 arg1Of increase,robust
R3981 T5928 T5929 arg1Of increase,in
R3982 T5928 T5932 arg1Of increase,at
R3983 T5931 T5929 arg2Of phosphorylation,in
R3984 T5931 T5930 arg1Of phosphorylation,Akt
R3985 T5937 T5932 arg2Of site,at
R3986 T5937 T5933 arg1Of site,a
R3987 T5937 T5934 arg1Of site,known
R3988 T5937 T5935 arg1Of site,major
R3989 T5937 T5936 arg1Of site,activation
R3990 T5937 T5938 arg1Of site,","
R3991 T5939 T5938 arg2Of Thr308,","
R3992 T5939 T5940 arg1Of Thr308,(
R3993 T5942 T5940 arg2Of 3A,(
R3994 T5942 T5941 arg1Of 3A,Fig.
R3995 T5943 T5940 arg3Of ),(
R3996 T5946 T5947 arg1Of we,did
R3997 T5946 T5949 arg1Of we,observe
R3998 T5949 T5944 arg1Of observe,Interestingly
R3999 T5949 T5945 arg1Of observe,","
R4000 T5949 T5947 arg2Of observe,did
R4001 T5949 T5948 arg1Of observe,not
R4002 T5952 T5949 arg2Of changes,observe
R4003 T5952 T5950 arg1Of changes,concomitant
R4004 T5952 T5951 arg1Of changes,phosphorylation
R4005 T5952 T5953 arg1Of changes,in
R4006 T5952 T5961 arg1Of changes,","
R4007 T5958 T5953 arg2Of site,in
R4008 T5958 T5954 arg1Of site,the
R4009 T5958 T5955 arg1Of site,second
R4010 T5958 T5956 arg1Of site,major
R4011 T5958 T5957 arg1Of site,activation
R4012 T5958 T5959 arg1Of site,of
R4013 T5960 T5959 arg2Of Akt,of
R4014 T5962 T5961 arg2Of Ser473,","
R4015 T5963 T5965 arg1Of We,observed
R4016 T5965 T5964 arg1Of observed,also
R4017 T5967 T5965 arg2Of increase,observed
R4018 T5967 T5966 arg1Of increase,an
R4019 T5967 T5968 arg1Of increase,in
R4020 T5970 T5969 arg1Of phosphorylation,the
R4021 T5970 T5971 arg1Of phosphorylation,of
R4022 T5970 T5980 arg1Of phosphorylation,and
R4023 T5974 T5975 arg1Of p46,and
R4024 T5976 T5975 arg2Of p54,and
R4025 T5977 T5971 arg2Of isoforms,of
R4026 T5977 T5972 arg1Of isoforms,both
R4027 T5977 T5973 arg1Of isoforms,the
R4028 T5977 T5974 arg1Of isoforms,p46
R4029 T5977 T5976 arg1Of isoforms,p54
R4030 T5977 T5978 arg1Of isoforms,of
R4031 T5979 T5978 arg2Of JNK,of
R4032 T5980 T5968 arg2Of and,in
R4033 T5984 T5980 arg2Of c-Jun,and
R4034 T5984 T5981 arg1Of c-Jun,its
R4035 T5984 T5982 arg1Of c-Jun,major
R4036 T5984 T5983 arg1Of c-Jun,substrate
R4037 T5984 T5985 arg1Of c-Jun,(
R4038 T5987 T5985 arg2Of 3A,(
R4039 T5987 T5986 arg1Of 3A,Fig.
R4040 T5988 T5985 arg3Of ),(
R4041 T5990 T5989 arg1Of data,These
R4042 T5990 T5991 arg1Of data,indicate
R4043 T5994 T5995 arg1Of Akt,and
R4044 T5995 T5993 arg1Of and,both
R4045 T5995 T5997 arg1Of and,are
R4046 T5995 T5998 arg2Of and,activated
R4047 T5996 T5995 arg2Of JNK,and
R4048 T5998 T5991 arg2Of activated,indicate
R4049 T5998 T5992 arg1Of activated,that
R4050 T5998 T5997 arg2Of activated,are
R4051 T5998 T5999 arg1Of activated,under
R4052 T6001 T5999 arg2Of conditions,under
R4053 T6001 T6000 arg1Of conditions,necroptotic

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T5382 674-679 Protein denotes c-Jun
T5381 630-633 Protein denotes p54
T5380 622-625 Protein denotes p46
T5379 326-330 Protein denotes TNFα
T5378 156-160 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6532 326-330 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T6506 721-724 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T6505 545-548 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T6504 364-367 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T6503 101-104 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T6502 32-35 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T6478 721-724 http://www.uniprot.org/uniprot/P31751 denotes Akt
T6477 545-548 http://www.uniprot.org/uniprot/P31751 denotes Akt
T6476 364-367 http://www.uniprot.org/uniprot/P31751 denotes Akt
T6475 101-104 http://www.uniprot.org/uniprot/P31751 denotes Akt
T6474 32-35 http://www.uniprot.org/uniprot/P31751 denotes Akt
T6446 32-35 http://www.uniprot.org/uniprot/P31749 denotes Akt
T6450 721-724 http://www.uniprot.org/uniprot/P31749 denotes Akt
T6449 545-548 http://www.uniprot.org/uniprot/P31749 denotes Akt
T6448 364-367 http://www.uniprot.org/uniprot/P31749 denotes Akt
T6447 101-104 http://www.uniprot.org/uniprot/P31749 denotes Akt
T6531 156-160 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T6535 674-679 http://www.uniprot.org/uniprot/P05412 denotes c-Jun
T6534 630-633 http://www.uniprot.org/uniprot/Q13451 denotes p54

GO-BP

Id Subject Object Predicate Lexical cue
T5466 594-609 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T5465 482-497 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T5464 368-383 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T5463 113-128 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T5450 729-732 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T5449 646-649 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T5448 109-112 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T5447 40-43 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T5443 240-250 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T5434 245-250 http://purl.obolibrary.org/obo/GO_0016265 denotes death

GO-MF

Id Subject Object Predicate Lexical cue
T5498 729-732 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T5497 646-649 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T5496 109-112 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK
T5495 40-43 http://purl.obolibrary.org/obo/GO_0004705 denotes JNK

GO-CC

Id Subject Object Predicate Lexical cue
T5516 240-244 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T5296 691-776 Sentence denotes These data indicate that both Akt and JNK are activated under necroptotic conditions.
T5295 558-690 Sentence denotes We also observed an increase in the phosphorylation of both the p46 and p54 isoforms of JNK and its major substrate c-Jun (Fig. 3A).
T5294 436-557 Sentence denotes Interestingly, we did not observe concomitant phosphorylation changes in the second major activation site of Akt, Ser473.
T5293 280-435 Sentence denotes Following stimulation with either zVAD.fmk or TNFα we observed a robust increase in Akt phosphorylation at a known major activation site, Thr308 (Fig. 3A).
T5292 174-279 Sentence denotes This time point was chosen because it reflects the early stage of cell death in our system (Fig. S3A, B).
T5291 0-173 Sentence denotes To understand the activation of Akt and JNK under necroptotic conditions, we examined the changes in Akt and JNK phosphorylation at 9 hrs post zVAD.fmk and TNFα stimulation.
T80 0-173 Sentence denotes To understand the activation of Akt and JNK under necroptotic conditions, we examined the changes in Akt and JNK phosphorylation at 9 hrs post zVAD.fmk and TNFα stimulation.
T81 174-279 Sentence denotes This time point was chosen because it reflects the early stage of cell death in our system (Fig. S3A, B).
T82 280-435 Sentence denotes Following stimulation with either zVAD.fmk or TNFα we observed a robust increase in Akt phosphorylation at a known major activation site, Thr308 (Fig. 3A).
T83 436-557 Sentence denotes Interestingly, we did not observe concomitant phosphorylation changes in the second major activation site of Akt, Ser473.
T84 558-690 Sentence denotes We also observed an increase in the phosphorylation of both the p46 and p54 isoforms of JNK and its major substrate c-Jun (Fig. 3A).
T85 691-776 Sentence denotes These data indicate that both Akt and JNK are activated under necroptotic conditions.

simple1

Id Subject Object Predicate Lexical cue
T5535 674-679 Protein denotes c-Jun
T5534 630-633 Protein denotes p54
T5533 622-625 Protein denotes p46
T5532 326-330 Protein denotes TNFα
T5531 156-160 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T6416 578-586 Positive_regulation denotes increase
T6415 594-609 Phosphorylation denotes phosphorylation
T6394 674-679 Protein denotes c-Jun
T6393 630-633 Protein denotes p54
T6392 622-625 Protein denotes p46
T6391 326-330 Protein denotes TNFα
T6390 156-160 Protein denotes TNFα
R4403 T6392 T6415 themeOf p46,phosphorylation
R4404 T6393 T6415 themeOf p54,phosphorylation
R4405 T6394 T6415 themeOf c-Jun,phosphorylation
R4406 T6394 T6416 themeOf c-Jun,increase
R4415 T6415 T6416 themeOf phosphorylation,increase
R4416 T6415 T6416 themeOf phosphorylation,increase
R4417 T6415 T6416 themeOf phosphorylation,increase

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T6700 578-586 Positive_regulation denotes increase
T6699 594-609 Phosphorylation denotes phosphorylation
T6673 622-625 Protein denotes p46
T6672 326-330 Protein denotes TNFα
T6671 156-160 Protein denotes TNFα
T6675 674-679 Protein denotes c-Jun
T6674 630-633 Protein denotes p54
R4484 T6673 T6699 themeOf p46,phosphorylation
R4485 T6674 T6699 themeOf p54,phosphorylation
R4486 T6675 T6699 themeOf c-Jun,phosphorylation
R4492 T6699 T6700 themeOf phosphorylation,increase
R4493 T6699 T6700 themeOf phosphorylation,increase
R4494 T6699 T6700 themeOf phosphorylation,increase

DLUT931

Id Subject Object Predicate Lexical cue
T6580 578-586 Positive_regulation denotes increase
T6579 594-609 Phosphorylation denotes phosphorylation
T6578 314-322 Positive_regulation denotes zVAD.fmk
T6555 674-679 Protein denotes c-Jun
T6554 630-633 Protein denotes p54
T6553 622-625 Protein denotes p46
T6552 326-330 Protein denotes TNFα
T6551 156-160 Protein denotes TNFα
R4428 T6552 T6578 themeOf TNFα,zVAD.fmk
R4429 T6553 T6579 themeOf p46,phosphorylation
R4430 T6554 T6579 themeOf p54,phosphorylation
R4431 T6555 T6579 themeOf c-Jun,phosphorylation
R4444 T6579 T6580 themeOf phosphorylation,increase
R4445 T6579 T6580 themeOf phosphorylation,increase
R4446 T6579 T6580 themeOf phosphorylation,increase

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T7306 14-43 Positive_regulation denotes the activation of Akt and JNK
T7305 14-43 Positive_regulation denotes the activation of Akt and JNK
T7299 280-383 Positive_regulation denotes Following stimulation with either zVAD.fmk or TNFα we observed a robust increase in Akt phosphorylation
T7298 691-775 Positive_regulation denotes These data indicate that both Akt and JNK are activated under necroptotic conditions
T7297 691-775 Positive_regulation denotes These data indicate that both Akt and JNK are activated under necroptotic conditions
T7287 109-128 Phosphorylation denotes JNK phosphorylation
T7286 361-383 Phosphorylation denotes in Akt phosphorylation
T7281 156-172 Positive_regulation denotes TNFα stimulation
T7276 156-160 Protein denotes TNFα
T7251 412-416 Entity denotes site
T7247 101-104 Protein denotes Akt
T7245 542-556 Entity denotes of Akt, Ser473
T7241 721-724 Protein denotes Akt
T7240 364-367 Protein denotes Akt
T7237 674-679 Protein denotes c-Jun
T7218 729-732 Protein denotes JNK
T7214 143-151 Entity denotes zVAD.fmk
T7211 326-330 Protein denotes TNFα
T7198 314-322 Entity denotes zVAD.fmk
T7197 418-424 Entity denotes Thr308
T7196 622-625 Protein denotes p46
T7193 658-673 Entity denotes major substrate
T7190 32-35 Protein denotes Akt
T7181 646-649 Protein denotes JNK
T7179 545-549 Protein denotes Akt,
T7178 630-633 Protein denotes p54
T7166 271-275 Protein denotes S3A,
T7165 109-112 Protein denotes JNK
T7162 40-43 Protein denotes JNK
T7160 681-684 Protein denotes Fig
T7153 132-137 Protein denotes 9 hrs
R4706 T7162 T7306 themeOf JNK,the activation of Akt and JNK
R4709 T7165 T7287 themeOf JNK,JNK phosphorylation
R4728 T7190 T7305 themeOf Akt,the activation of Akt and JNK
R4740 T7218 T7297 themeOf JNK,These data indicate that both Akt and JNK are activated under necroptotic conditions
R4753 T7240 T7286 themeOf Akt,in Akt phosphorylation
R4754 T7241 T7298 themeOf Akt,These data indicate that both Akt and JNK are activated under necroptotic conditions
R4771 T7276 T7281 themeOf TNFα,TNFα stimulation
R4774 T7286 T7299 themeOf in Akt phosphorylation,Following stimulation with either zVAD.fmk or TNFα we observed a robust increase in Akt phosphorylation

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T6797 737-746 Positive_regulation denotes activated
T6796 737-746 Positive_regulation denotes activated
T6795 729-732 Protein denotes JNK
T6794 721-724 Protein denotes Akt
T6793 578-586 Positive_regulation denotes increase
T6792 578-586 Positive_regulation denotes increase
T6791 578-586 Positive_regulation denotes increase
T6790 594-609 Phosphorylation denotes phosphorylation
T6789 594-609 Phosphorylation denotes phosphorylation
T6788 594-609 Phosphorylation denotes phosphorylation
T6787 646-649 Protein denotes JNK
T6786 630-633 Protein denotes p54
T6785 622-625 Protein denotes p46
T6784 498-505 Regulation denotes changes
T6783 498-505 Regulation denotes changes
T6782 482-497 Phosphorylation denotes phosphorylation
T6781 482-497 Phosphorylation denotes phosphorylation
T6780 550-556 Protein denotes Ser473
T6779 545-548 Protein denotes Akt
T6778 352-360 Positive_regulation denotes increase
T6777 368-383 Phosphorylation denotes phosphorylation
T6776 364-367 Protein denotes Akt
T6775 326-330 Protein denotes TNFα
T6774 314-322 Protein denotes zVAD.fmk
T6773 90-97 Regulation denotes changes
T6772 90-97 Regulation denotes changes
T6771 90-97 Regulation denotes changes
T6770 161-172 Positive_regulation denotes stimulation
T6769 113-128 Phosphorylation denotes phosphorylation
T6768 113-128 Phosphorylation denotes phosphorylation
T6767 18-28 Positive_regulation denotes activation
T6766 18-28 Positive_regulation denotes activation
T6765 156-160 Protein denotes TNFα
T6764 109-112 Protein denotes JNK
T6763 101-104 Protein denotes Akt
T6762 40-43 Protein denotes JNK
T6761 32-35 Protein denotes Akt
R4499 T6764 T6769 themeOf JNK,phosphorylation
R4500 T6765 T6770 themeOf TNFα,stimulation
R4502 T6768 T6771 themeOf phosphorylation,changes
R4506 T6769 T6772 themeOf phosphorylation,changes
R4507 T6770 T6773 themeOf stimulation,changes
R4510 T6776 T6777 themeOf Akt,phosphorylation
R4512 T6777 T6778 themeOf phosphorylation,increase
R4513 T6779 T6781 themeOf Akt,phosphorylation
R4516 T6780 T6782 themeOf Ser473,phosphorylation
R4517 T6781 T6783 themeOf phosphorylation,changes
R4519 T6782 T6784 themeOf phosphorylation,changes
R4523 T6785 T6788 themeOf p46,phosphorylation
R4525 T6786 T6789 themeOf p54,phosphorylation
R4529 T6787 T6790 themeOf JNK,phosphorylation
R4531 T6788 T6791 themeOf phosphorylation,increase
R4532 T6789 T6792 themeOf phosphorylation,increase
R4534 T6790 T6793 themeOf phosphorylation,increase
R4535 T6794 T6796 themeOf Akt,activated
R4536 T6761 T6766 themeOf Akt,activation
R4537 T6762 T6767 themeOf JNK,activation
R4538 T6763 T6768 themeOf Akt,phosphorylation
R4539 T6795 T6797 themeOf JNK,activated

test3

Id Subject Object Predicate Lexical cue
T5223 674-679 Protein denotes c-Jun
T5222 630-633 Protein denotes p54
T5221 622-625 Protein denotes p46
T5220 594-609 Phosphorylation denotes phosphorylation
T5219 578-586 Positive_regulation denotes increase
T5218 526-536 Positive_regulation denotes activation
T5217 482-497 Phosphorylation denotes phosphorylation
T5216 368-383 Phosphorylation denotes phosphorylation
T5215 352-360 Positive_regulation denotes increase
T5214 326-330 Protein denotes TNFα
T5213 156-160 Protein denotes TNFα
T5212 113-128 Phosphorylation denotes phosphorylation
T5211 90-97 Regulation denotes changes
T5210 18-28 Positive_regulation denotes activation
T5167 674-679 Protein denotes c-Jun
T5166 630-633 Protein denotes p54
T5165 622-625 Protein denotes p46
T5164 326-330 Protein denotes TNFα
T5163 156-160 Protein denotes TNFα
R3546 T5216 T5215 themeOf phosphorylation,increase
R3547 T5220 T5219 themeOf phosphorylation,increase
R3548 T5221 T5220 themeOf p46,phosphorylation
R3549 T5222 T5220 themeOf p54,phosphorylation
R3550 T5223 T5220 themeOf c-Jun,phosphorylation