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PMC:3585731 / 12012-12165 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T5103 109-116 Positive_regulation denotes induced
T5102 23-32 Negative_regulation denotes knockdown
T5064 138-142 Protein denotes TNFα
T5063 58-62 Protein denotes Akt2
T5062 49-53 Protein denotes Akt1
R3496 T5062 T5102 themeOf Akt1,knockdown
R3497 T5063 T5102 themeOf Akt2,knockdown
R3498 T5064 T5103 causeOf TNFα,induced
R3518 T5102 T5103 themeOf knockdown,induced

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5821 151-152 -RRB- denotes )
T5820 149-151 NN denotes 2C
T5819 144-148 NN denotes Fig.
T5818 143-144 -LRB- denotes (
T5817 138-142 NN denotes TNFα
T5816 134-137 CC denotes and
T5815 125-133 NN denotes zVAD.fmk
T5814 120-124 CC denotes both
T5813 117-119 IN denotes by
T5812 109-116 VB denotes induced
T5811 97-108 NN denotes necroptosis
T5810 92-96 IN denotes from
T5809 86-91 NN denotes cells
T5808 76-85 VB denotes protected
T5807 69-75 NN denotes siRNAs
T5806 63-68 VB denotes using
T5805 58-62 NN denotes Akt2
T5804 54-57 CC denotes and
T5803 49-53 NN denotes Akt1
T5802 40-48 NN denotes isoforms
T5801 36-39 NN denotes Akt
T5800 33-35 IN denotes of
T5799 23-32 NN denotes knockdown
T5798 10-22 JJ denotes simultaneous
T5797 8-9 -COMMA- denotes ,
T5796 0-8 RB denotes Secondly
R3849 T5799 T5798 arg1Of knockdown,simultaneous
R3850 T5799 T5800 arg1Of knockdown,of
R3851 T5799 T5808 arg1Of knockdown,protected
R3852 T5802 T5801 arg1Of isoforms,Akt
R3853 T5803 T5804 arg1Of Akt1,and
R3854 T5804 T5800 arg2Of and,of
R3855 T5804 T5802 arg1Of and,isoforms
R3856 T5804 T5806 arg1Of and,using
R3857 T5805 T5804 arg2Of Akt2,and
R3858 T5807 T5806 arg2Of siRNAs,using
R3859 T5808 T5796 arg1Of protected,Secondly
R3860 T5808 T5797 arg1Of protected,","
R3861 T5809 T5808 arg2Of cells,protected
R3862 T5809 T5810 arg1Of cells,from
R3863 T5811 T5810 arg2Of necroptosis,from
R3864 T5811 T5812 arg2Of necroptosis,induced
R3865 T5815 T5816 arg1Of zVAD.fmk,and
R3866 T5816 T5812 arg1Of and,induced
R3867 T5816 T5813 arg2Of and,by
R3868 T5816 T5814 arg1Of and,both
R3869 T5816 T5818 arg1Of and,(
R3870 T5817 T5816 arg2Of TNFα,and
R3871 T5820 T5818 arg2Of 2C,(
R3872 T5820 T5819 arg1Of 2C,Fig.
R3873 T5821 T5818 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T5375 138-142 Protein denotes TNFα
T5374 58-62 Protein denotes Akt2
T5373 49-53 Protein denotes Akt1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6500 36-39 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T6472 36-39 http://www.uniprot.org/uniprot/P31751 denotes Akt
T6444 36-39 http://www.uniprot.org/uniprot/P31749 denotes Akt
T6530 138-142 http://www.uniprot.org/uniprot/P01375 denotes TNFα

GO-BP

Id Subject Object Predicate Lexical cue
T5414 97-108 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T5404 97-108 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-CC

Id Subject Object Predicate Lexical cue
T5513 86-91 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T5288 0-153 Sentence denotes Secondly, simultaneous knockdown of Akt isoforms Akt1 and Akt2 using siRNAs protected cells from necroptosis induced by both zVAD.fmk and TNFα (Fig. 2C).
T77 0-153 Sentence denotes Secondly, simultaneous knockdown of Akt isoforms Akt1 and Akt2 using siRNAs protected cells from necroptosis induced by both zVAD.fmk and TNFα (Fig. 2C).

simple1

Id Subject Object Predicate Lexical cue
T5528 138-142 Protein denotes TNFα
T5527 58-62 Protein denotes Akt2
T5526 49-53 Protein denotes Akt1

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T6413 23-32 Negative_regulation denotes knockdown
T6387 138-142 Protein denotes TNFα
T6386 58-62 Protein denotes Akt2
T6385 49-53 Protein denotes Akt1
R4400 T6385 T6413 themeOf Akt1,knockdown
R4401 T6386 T6413 themeOf Akt2,knockdown

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T6697 23-32 Negative_regulation denotes knockdown
T6696 109-116 Positive_regulation denotes induced
T6668 138-142 Protein denotes TNFα
T6667 58-62 Protein denotes Akt2
T6666 49-53 Protein denotes Akt1
R4480 T6666 T6697 themeOf Akt1,knockdown
R4481 T6667 T6697 themeOf Akt2,knockdown
R4482 T6668 T6696 themeOf TNFα,induced

DLUT931

Id Subject Object Predicate Lexical cue
T6576 69-75 Negative_regulation denotes siRNAs
T6575 23-32 Negative_regulation denotes knockdown
T6548 138-142 Protein denotes TNFα
T6547 58-62 Protein denotes Akt2
T6546 49-53 Protein denotes Akt1
R4423 T6546 T6575 themeOf Akt1,knockdown
R4424 T6546 T6576 themeOf Akt1,siRNAs
R4425 T6547 T6575 themeOf Akt2,knockdown
R4426 T6547 T6576 themeOf Akt2,siRNAs
R4442 T6576 T6575 themeOf siRNAs,knockdown
R4443 T6576 T6575 themeOf siRNAs,knockdown

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T7256 58-75 Protein denotes Akt2 using siRNAs
T7249 138-142 Protein denotes TNFα
T7233 36-53 Protein denotes Akt isoforms Akt1
T7217 86-91 Entity denotes cells
T7215 144-147 Protein denotes Fig
T7158 125-133 Entity denotes zVAD.fmk
T7150 36-39 Protein denotes Akt

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T6756 76-85 Gene_expression denotes protected
T6755 23-32 Negative_regulation denotes knockdown
T6754 23-32 Negative_regulation denotes knockdown
T6753 23-32 Negative_regulation denotes knockdown
T6752 144-151 Protein denotes Fig. 2C
T6751 138-142 Protein denotes TNFα
T6750 125-133 Protein denotes zVAD.fmk
T6749 58-62 Protein denotes Akt2
T6748 49-53 Protein denotes Akt1
T6747 36-39 Protein denotes Akt
R4526 T6747 T6753 themeOf Akt,knockdown
R4527 T6748 T6754 themeOf Akt1,knockdown
R4528 T6749 T6755 themeOf Akt2,knockdown
R4530 T6752 T6756 themeOf Fig. 2C,protected

test3

Id Subject Object Predicate Lexical cue
T5206 138-142 Protein denotes TNFα
T5205 109-116 Positive_regulation denotes induced
T5204 58-62 Protein denotes Akt2
T5203 49-53 Protein denotes Akt1
T5202 23-32 Negative_regulation denotes knockdown
T5160 138-142 Protein denotes TNFα
T5159 58-62 Protein denotes Akt2
T5158 49-53 Protein denotes Akt1
R3541 T5202 T5205 themeOf knockdown,induced
R3542 T5203 T5202 themeOf Akt1,knockdown
R3543 T5204 T5202 themeOf Akt2,knockdown
R3544 T5206 T5205 causeOf TNFα,induced