PMC:3585731 / 11223-11439
Annnotations
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T28926 | 151-160 | Negative_regulation | denotes | inhibitor |
| T28925 | 128-138 | Negative_regulation | denotes | inhibitors |
| T28924 | 22-29 | Positive_regulation | denotes | induced |
| T28918 | 45-49 | Protein | denotes | TNFα |
| R20066 | T28918 | T28924 | causeOf | TNFα,induced |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T29029 | 147-150 | NN | denotes | Akt |
| T29028 | 146-147 | -LRB- | denotes | ( |
| T29027 | 142-145 | NN | denotes | Akt |
| T29026 | 139-141 | IN | denotes | of |
| T29025 | 128-138 | NN | denotes | inhibitors |
| T29024 | 125-127 | IN | denotes | of |
| T29023 | 116-124 | NN | denotes | presence |
| T29022 | 112-115 | DT | denotes | the |
| T29021 | 109-111 | IN | denotes | in |
| T29020 | 107-108 | -RRB- | denotes | ) |
| T29019 | 106-107 | NN | denotes | B |
| T29018 | 104-105 | -COMMA- | denotes | , |
| T29017 | 100-104 | JJ | denotes | free |
| T29016 | 94-99 | NN | denotes | serum |
| T29015 | 93-94 | -LRB- | denotes | ( |
| T29014 | 76-92 | NN | denotes | factors/zVAD.fmk |
| T29013 | 69-75 | NN | denotes | growth |
| T29012 | 66-68 | CC | denotes | or |
| T29011 | 64-65 | -RRB- | denotes | ) |
| T29010 | 63-64 | NN | denotes | A |
| T29009 | 61-62 | -COMMA- | denotes | , |
| T29008 | 56-61 | NN | denotes | serum |
| T29007 | 51-55 | JJ | denotes | full |
| T29006 | 50-51 | -LRB- | denotes | ( |
| T29005 | 45-49 | NN | denotes | TNFα |
| T29004 | 42-44 | CC | denotes | or |
| T29003 | 33-41 | NN | denotes | zVAD.fmk |
| T29002 | 30-32 | IN | denotes | by |
| T29001 | 22-29 | VB | denotes | induced |
| T29000 | 18-21 | VB | denotes | was |
| T28999 | 6-17 | NN | denotes | Necroptosis |
| T28998 | 4-5 | -RRB- | denotes | ) |
| T28997 | 3-4 | NN | denotes | B |
| T28996 | 2-3 | -COMMA- | denotes | , |
| T28995 | 1-2 | NN | denotes | A |
| T28994 | 0-1 | -LRB- | denotes | ( |
| T29048 | 214-215 | -RRB- | denotes | ) |
| T29047 | 209-214 | NN | denotes | UO126 |
| T29046 | 208-209 | -LRB- | denotes | ( |
| T29045 | 204-207 | NN | denotes | Erk |
| T29044 | 200-203 | CC | denotes | and |
| T29043 | 198-199 | -COMMA- | denotes | , |
| T29042 | 197-198 | -RRB- | denotes | ) |
| T29041 | 189-197 | NN | denotes | PD169316 |
| T29040 | 188-189 | -LRB- | denotes | ( |
| T29039 | 184-187 | NN | denotes | p38 |
| T29038 | 182-183 | -COMMA- | denotes | , |
| T29037 | 181-182 | -RRB- | denotes | ) |
| T29036 | 173-181 | NN | denotes | SP600125 |
| T29035 | 172-173 | -LRB- | denotes | ( |
| T29034 | 168-171 | NN | denotes | JNK |
| T29033 | 166-167 | -COMMA- | denotes | , |
| T29032 | 165-166 | -RRB- | denotes | ) |
| T29031 | 161-165 | CD | denotes | VIII |
| T29030 | 151-160 | NN | denotes | inhibitor |
| R20075 | T28995 | T28994 | arg2Of | A,( |
| R20076 | T28995 | T28996 | arg1Of | A,"," |
| R20077 | T28997 | T28996 | arg2Of | B,"," |
| R20078 | T28998 | T28994 | arg3Of | ),( |
| R20079 | T28999 | T28994 | arg1Of | Necroptosis,( |
| R20080 | T28999 | T29000 | arg1Of | Necroptosis,was |
| R20081 | T28999 | T29001 | arg2Of | Necroptosis,induced |
| R20082 | T29001 | T29000 | arg2Of | induced,was |
| R20083 | T29001 | T29021 | arg1Of | induced,in |
| R20084 | T29003 | T29004 | arg1Of | zVAD.fmk,or |
| R20085 | T29004 | T29006 | arg1Of | or,( |
| R20086 | T29004 | T29012 | arg1Of | or,or |
| R20087 | T29005 | T29004 | arg2Of | TNFα,or |
| R20088 | T29008 | T29006 | arg2Of | serum,( |
| R20089 | T29008 | T29007 | arg1Of | serum,full |
| R20090 | T29008 | T29009 | arg1Of | serum,"," |
| R20091 | T29010 | T29009 | arg2Of | A,"," |
| R20092 | T29011 | T29006 | arg3Of | ),( |
| R20093 | T29012 | T29001 | arg1Of | or,induced |
| R20094 | T29012 | T29002 | arg2Of | or,by |
| R20095 | T29014 | T29012 | arg2Of | factors/zVAD.fmk,or |
| R20096 | T29014 | T29013 | arg1Of | factors/zVAD.fmk,growth |
| R20097 | T29014 | T29015 | arg1Of | factors/zVAD.fmk,( |
| R20098 | T29016 | T29015 | arg2Of | serum,( |
| R20099 | T29016 | T29017 | arg1Of | serum,free |
| R20100 | T29016 | T29018 | arg1Of | serum,"," |
| R20101 | T29019 | T29018 | arg2Of | B,"," |
| R20102 | T29020 | T29015 | arg3Of | ),( |
| R20103 | T29023 | T29021 | arg2Of | presence,in |
| R20104 | T29023 | T29022 | arg1Of | presence,the |
| R20105 | T29023 | T29024 | arg1Of | presence,of |
| R20106 | T29025 | T29024 | arg2Of | inhibitors,of |
| R20107 | T29025 | T29026 | arg1Of | inhibitors,of |
| R20108 | T29027 | T29028 | arg1Of | Akt,( |
| R20109 | T29027 | T29033 | arg1Of | Akt,"," |
| R20110 | T29030 | T29028 | arg2Of | inhibitor,( |
| R20111 | T29030 | T29029 | arg1Of | inhibitor,Akt |
| R20112 | T29030 | T29031 | arg1Of | inhibitor,VIII |
| R20113 | T29032 | T29028 | arg3Of | ),( |
| R20114 | T29033 | T29038 | arg1Of | ",","," |
| R20115 | T29034 | T29033 | arg2Of | JNK,"," |
| R20116 | T29034 | T29035 | arg1Of | JNK,( |
| R20117 | T29036 | T29035 | arg2Of | SP600125,( |
| R20118 | T29037 | T29035 | arg3Of | ),( |
| R20119 | T29038 | T29044 | arg1Of | ",",and |
| R20120 | T29039 | T29038 | arg2Of | p38,"," |
| R20121 | T29039 | T29040 | arg1Of | p38,( |
| R20122 | T29041 | T29040 | arg2Of | PD169316,( |
| R20123 | T29042 | T29040 | arg3Of | ),( |
| R20124 | T29044 | T29026 | arg2Of | and,of |
| R20125 | T29044 | T29043 | arg1Of | and,"," |
| R20126 | T29045 | T29044 | arg2Of | Erk,and |
| R20127 | T29045 | T29046 | arg1Of | Erk,( |
| R20128 | T29047 | T29046 | arg2Of | UO126,( |
| R20129 | T29048 | T29046 | arg3Of | ),( |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T28957 | 45-49 | Protein | denotes | TNFα |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T29120 | 45-49 | http://www.uniprot.org/uniprot/P01375 | denotes | TNFα |
| T29117 | 147-150 | http://www.uniprot.org/uniprot/Q9Y243 | denotes | Akt |
| T29116 | 142-145 | http://www.uniprot.org/uniprot/Q9Y243 | denotes | Akt |
| T29113 | 147-150 | http://www.uniprot.org/uniprot/P31751 | denotes | Akt |
| T29112 | 142-145 | http://www.uniprot.org/uniprot/P31751 | denotes | Akt |
| T29108 | 142-145 | http://www.uniprot.org/uniprot/P31749 | denotes | Akt |
| T29109 | 147-150 | http://www.uniprot.org/uniprot/P31749 | denotes | Akt |
UBERON-AE
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T28944 | 94-99 | http://purl.obolibrary.org/obo/UBERON_0001977 | denotes | serum |
| T28943 | 56-61 | http://purl.obolibrary.org/obo/UBERON_0001977 | denotes | serum |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T28968 | 184-187 | http://purl.obolibrary.org/obo/GO_0004707 | denotes | p38 |
| T28967 | 168-171 | http://purl.obolibrary.org/obo/GO_0004705 | denotes | JNK |
| T28966 | 69-75 | http://purl.obolibrary.org/obo/GO_0040007 | denotes | growth |
| T28965 | 6-17 | http://purl.obolibrary.org/obo/GO_0097528 | denotes | Necroptosis |
| T28963 | 6-17 | http://purl.obolibrary.org/obo/GO_0070266 | denotes | Necroptosis |
GO-MF
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T28970 | 184-187 | http://purl.obolibrary.org/obo/GO_0004707 | denotes | p38 |
| T28969 | 168-171 | http://purl.obolibrary.org/obo/GO_0004705 | denotes | JNK |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T28946 | 0-216 | Sentence | denotes | (A,B) Necroptosis was induced by zVAD.fmk or TNFα (full serum, A) or growth factors/zVAD.fmk (serum free, B) in the presence of inhibitors of Akt (Akt inhibitor VIII), JNK (SP600125), p38 (PD169316), and Erk (UO126). |
| T71 | 0-216 | Sentence | denotes | (A,B) Necroptosis was induced by zVAD.fmk or TNFα (full serum, A) or growth factors/zVAD.fmk (serum free, B) in the presence of inhibitors of Akt (Akt inhibitor VIII), JNK (SP600125), p38 (PD169316), and Erk (UO126). |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T28980 | 45-49 | Protein | denotes | TNFα |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T29101 | 45-49 | Protein | denotes | TNFα |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T29137 | 45-49 | Protein | denotes | TNFα |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T29123 | 45-49 | Protein | denotes | TNFα |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T29368 | 84-92 | Entity | denotes | zVAD.fmk |
| T29365 | 142-171 | Protein | denotes | Akt (Akt inhibitor VIII), JNK |
| T29362 | 45-49 | Protein | denotes | TNFα |
| T29361 | 142-167 | Protein | denotes | Akt (Akt inhibitor VIII), |
| T29359 | 184-187 | Protein | denotes | p38 |
| T29356 | 147-165 | Entity | denotes | Akt inhibitor VIII |
| T29353 | 128-171 | Entity | denotes | inhibitors of Akt (Akt inhibitor VIII), JNK |
| T29350 | 33-41 | Entity | denotes | zVAD.fmk |
| T29345 | 204-207 | Protein | denotes | Erk |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T29249 | 215-216 | . | denotes | . |
| T29248 | 214-215 | -RRB- | denotes | ) |
| T29247 | 209-214 | NNP | denotes | UO126 |
| T29246 | 208-209 | -LRB- | denotes | ( |
| T29245 | 204-207 | NNP | denotes | Erk |
| T29244 | 200-203 | CC | denotes | and |
| T29243 | 198-199 | , | denotes | , |
| T29242 | 197-198 | -RRB- | denotes | ) |
| T29241 | 189-197 | NNP | denotes | PD169316 |
| T29240 | 188-189 | -LRB- | denotes | ( |
| T29239 | 184-187 | JJ | denotes | p38 |
| T29238 | 182-183 | , | denotes | , |
| T29237 | 181-182 | -RRB- | denotes | ) |
| T29236 | 173-181 | NNP | denotes | SP600125 |
| T29235 | 172-173 | -LRB- | denotes | ( |
| T29234 | 168-171 | NNP | denotes | JNK |
| T29233 | 166-167 | , | denotes | , |
| T29232 | 165-166 | -RRB- | denotes | ) |
| T29231 | 161-165 | NNP | denotes | VIII |
| T29230 | 151-160 | NN | denotes | inhibitor |
| T29229 | 147-150 | NNP | denotes | Akt |
| T29228 | 146-147 | -LRB- | denotes | ( |
| T29227 | 142-145 | NNP | denotes | Akt |
| T29226 | 139-141 | IN | denotes | of |
| T29225 | 128-138 | NNS | denotes | inhibitors |
| T29224 | 125-127 | IN | denotes | of |
| T29223 | 116-124 | NN | denotes | presence |
| T29222 | 112-115 | DT | denotes | the |
| T29221 | 109-111 | IN | denotes | in |
| T29220 | 107-108 | -RRB- | denotes | ) |
| T29219 | 106-107 | NNP | denotes | B |
| T29218 | 104-105 | , | denotes | , |
| T29217 | 100-104 | JJ | denotes | free |
| T29216 | 94-99 | NN | denotes | serum |
| T29215 | 93-94 | -LRB- | denotes | ( |
| T29214 | 89-92 | NN | denotes | fmk |
| T29213 | 88-89 | . | denotes | . |
| T29212 | 76-88 | NNP | denotes | factors/zVAD |
| T29211 | 69-75 | NN | denotes | growth |
| T29210 | 66-68 | CC | denotes | or |
| T29209 | 64-65 | -RRB- | denotes | ) |
| T29208 | 63-64 | NNP | denotes | A |
| T29207 | 61-62 | , | denotes | , |
| T29206 | 56-61 | NN | denotes | serum |
| T29205 | 51-55 | JJ | denotes | full |
| T29204 | 50-51 | -LRB- | denotes | ( |
| T29203 | 45-49 | NNP | denotes | TNFα |
| T29202 | 42-44 | CC | denotes | or |
| T29201 | 33-41 | NNP | denotes | zVAD.fmk |
| T29200 | 30-32 | IN | denotes | by |
| T29199 | 22-29 | VBN | denotes | induced |
| T29198 | 18-21 | VBD | denotes | was |
| T29197 | 6-17 | NNP | denotes | Necroptosis |
| T29196 | 4-5 | -RRB- | denotes | ) |
| T29195 | 3-4 | NNP | denotes | B |
| T29194 | 2-3 | , | denotes | , |
| T29193 | 1-2 | DT | denotes | A |
| T29192 | 0-1 | -LRB- | denotes | ( |
| R20223 | T29192 | T29199 | punct | (,induced |
| R20224 | T29193 | T29199 | intj | A,induced |
| R20225 | T29194 | T29199 | punct | ",",induced |
| R20226 | T29195 | T29197 | nmod | B,Necroptosis |
| R20227 | T29196 | T29197 | punct | ),Necroptosis |
| R20228 | T29197 | T29199 | nsubjpass | Necroptosis,induced |
| R20229 | T29198 | T29199 | auxpass | was,induced |
| R20230 | T29199 | T29199 | ROOT | induced,induced |
| R20231 | T29200 | T29199 | agent | by,induced |
| R20232 | T29201 | T29200 | pobj | zVAD.fmk,by |
| R20233 | T29202 | T29201 | cc | or,zVAD.fmk |
| R20234 | T29203 | T29201 | conj | TNFα,zVAD.fmk |
| R20235 | T29204 | T29203 | punct | (,TNFα |
| R20236 | T29205 | T29206 | amod | full,serum |
| R20237 | T29206 | T29203 | appos | serum,TNFα |
| R20238 | T29207 | T29203 | punct | ",",TNFα |
| R20239 | T29208 | T29203 | conj | A,TNFα |
| R20240 | T29209 | T29208 | punct | ),A |
| R20241 | T29210 | T29199 | cc | or,induced |
| R20242 | T29211 | T29199 | conj | growth,induced |
| R20243 | T29212 | T29211 | appos | factors/zVAD,growth |
| R20244 | T29213 | T29199 | punct | .,induced |
| R20245 | T29214 | T29214 | ROOT | fmk,fmk |
| R20246 | T29215 | T29219 | punct | (,B |
| R20247 | T29216 | T29217 | npadvmod | serum,free |
| R20248 | T29217 | T29219 | amod | free,B |
| R20249 | T29218 | T29219 | punct | ",",B |
| R20250 | T29219 | T29214 | appos | B,fmk |
| R20251 | T29220 | T29219 | punct | ),B |
| R20252 | T29221 | T29214 | prep | in,fmk |
| R20253 | T29222 | T29223 | det | the,presence |
| R20254 | T29223 | T29221 | pobj | presence,in |
| R20255 | T29224 | T29223 | prep | of,presence |
| R20256 | T29225 | T29224 | pobj | inhibitors,of |
| R20257 | T29226 | T29225 | prep | of,inhibitors |
| R20258 | T29227 | T29226 | pobj | Akt,of |
| R20259 | T29228 | T29231 | punct | (,VIII |
| R20260 | T29229 | T29231 | compound | Akt,VIII |
| R20261 | T29230 | T29231 | compound | inhibitor,VIII |
| R20262 | T29231 | T29227 | appos | VIII,Akt |
| R20263 | T29232 | T29227 | punct | ),Akt |
| R20264 | T29233 | T29227 | punct | ",",Akt |
| R20265 | T29234 | T29227 | conj | JNK,Akt |
| R20266 | T29235 | T29236 | punct | (,SP600125 |
| R20267 | T29236 | T29234 | appos | SP600125,JNK |
| R20268 | T29237 | T29234 | punct | ),JNK |
| R20269 | T29238 | T29214 | punct | ",",fmk |
| R20270 | T29239 | T29214 | amod | p38,fmk |
| R20271 | T29240 | T29241 | punct | (,PD169316 |
| R20272 | T29241 | T29239 | appos | PD169316,p38 |
| R20273 | T29242 | T29241 | punct | ),PD169316 |
| R20274 | T29243 | T29239 | punct | ",",p38 |
| R20275 | T29244 | T29239 | cc | and,p38 |
| R20276 | T29245 | T29239 | conj | Erk,p38 |
| R20277 | T29246 | T29247 | punct | (,UO126 |
| R20278 | T29247 | T29245 | appos | UO126,Erk |
| R20279 | T29248 | T29245 | punct | ),Erk |
| R20280 | T29249 | T29214 | punct | .,fmk |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T29169 | 128-138 | Negative_regulation | denotes | inhibitors |
| T29168 | 128-138 | Negative_regulation | denotes | inhibitors |
| T29167 | 128-138 | Negative_regulation | denotes | inhibitors |
| T29166 | 128-138 | Negative_regulation | denotes | inhibitors |
| T29165 | 151-160 | Negative_regulation | denotes | inhibitor |
| T29164 | 151-160 | Negative_regulation | denotes | inhibitor |
| T29163 | 151-160 | Negative_regulation | denotes | inhibitor |
| T29162 | 151-160 | Negative_regulation | denotes | inhibitor |
| T29161 | 128-138 | Negative_regulation | denotes | inhibitors |
| T29160 | 128-138 | Negative_regulation | denotes | inhibitors |
| T29159 | 128-138 | Negative_regulation | denotes | inhibitors |
| T29158 | 128-138 | Negative_regulation | denotes | inhibitors |
| T29157 | 128-138 | Negative_regulation | denotes | inhibitors |
| T29156 | 128-138 | Negative_regulation | denotes | inhibitors |
| T29155 | 6-17 | Entity | denotes | Necroptosis |
| T29154 | 209-214 | Protein | denotes | UO126 |
| T29153 | 204-207 | Protein | denotes | Erk |
| T29152 | 189-197 | Protein | denotes | PD169316 |
| T29151 | 184-187 | Protein | denotes | p38 |
| T29150 | 168-171 | Protein | denotes | JNK |
| T29149 | 147-150 | Protein | denotes | Akt |
| T29148 | 142-145 | Protein | denotes | Akt |
| T29147 | 33-49 | Protein | denotes | zVAD.fmk or TNFα |
| R20192 | T29148 | T29156 | themeOf | Akt,inhibitors |
| R20193 | T29148 | T29162 | themeOf | Akt,inhibitor |
| R20194 | T29149 | T29163 | themeOf | Akt,inhibitor |
| R20195 | T29150 | T29157 | themeOf | JNK,inhibitors |
| R20196 | T29151 | T29158 | themeOf | p38,inhibitors |
| R20197 | T29151 | T29164 | themeOf | p38,inhibitor |
| R20198 | T29152 | T29159 | themeOf | PD169316,inhibitors |
| R20199 | T29153 | T29160 | themeOf | Erk,inhibitors |
| R20200 | T29153 | T29165 | themeOf | Erk,inhibitor |
| R20201 | T29154 | T29161 | themeOf | UO126,inhibitors |
| R20202 | T29162 | T29166 | themeOf | inhibitor,inhibitors |
| R20203 | T29163 | T29167 | themeOf | inhibitor,inhibitors |
| R20204 | T29164 | T29168 | themeOf | inhibitor,inhibitors |
| R20205 | T29165 | T29169 | themeOf | inhibitor,inhibitors |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T28937 | 151-160 | Negative_regulation | denotes | inhibitor |
| T28936 | 45-49 | Protein | denotes | TNFα |
| T28929 | 45-49 | Protein | denotes | TNFα |