PMC:3585731 / 11118-11710
Annnotations
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T28927 | 506-516 | Gene_expression | denotes | expression |
| T28926 | 256-265 | Negative_regulation | denotes | inhibitor |
| T28925 | 233-243 | Negative_regulation | denotes | inhibitors |
| T28924 | 127-134 | Positive_regulation | denotes | induced |
| T28923 | 75-82 | Positive_regulation | denotes | induced |
| T28922 | 467-471 | Protein | denotes | TNFα |
| T28921 | 414-425 | Protein | denotes | Akt3 siRNAs |
| T28920 | 404-408 | Protein | denotes | Akt2 |
| T28919 | 398-402 | Protein | denotes | Akt1 |
| T28918 | 150-154 | Protein | denotes | TNFα |
| T28917 | 99-103 | Protein | denotes | TNFα |
| R20065 | T28917 | T28923 | causeOf | TNFα,induced |
| R20066 | T28918 | T28924 | causeOf | TNFα,induced |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T29029 | 252-255 | NN | denotes | Akt |
| T29028 | 251-252 | -LRB- | denotes | ( |
| T29027 | 247-250 | NN | denotes | Akt |
| T29026 | 244-246 | IN | denotes | of |
| T29025 | 233-243 | NN | denotes | inhibitors |
| T29024 | 230-232 | IN | denotes | of |
| T29023 | 221-229 | NN | denotes | presence |
| T29022 | 217-220 | DT | denotes | the |
| T29021 | 214-216 | IN | denotes | in |
| T29020 | 212-213 | -RRB- | denotes | ) |
| T29019 | 211-212 | NN | denotes | B |
| T29018 | 209-210 | -COMMA- | denotes | , |
| T29017 | 205-209 | JJ | denotes | free |
| T29016 | 199-204 | NN | denotes | serum |
| T29015 | 198-199 | -LRB- | denotes | ( |
| T29014 | 181-197 | NN | denotes | factors/zVAD.fmk |
| T29013 | 174-180 | NN | denotes | growth |
| T29012 | 171-173 | CC | denotes | or |
| T29011 | 169-170 | -RRB- | denotes | ) |
| T29010 | 168-169 | NN | denotes | A |
| T29009 | 166-167 | -COMMA- | denotes | , |
| T29008 | 161-166 | NN | denotes | serum |
| T29007 | 156-160 | JJ | denotes | full |
| T29006 | 155-156 | -LRB- | denotes | ( |
| T29005 | 150-154 | NN | denotes | TNFα |
| T29004 | 147-149 | CC | denotes | or |
| T29003 | 138-146 | NN | denotes | zVAD.fmk |
| T29002 | 135-137 | IN | denotes | by |
| T29001 | 127-134 | VB | denotes | induced |
| T29000 | 123-126 | VB | denotes | was |
| T28999 | 111-122 | NN | denotes | Necroptosis |
| T28998 | 109-110 | -RRB- | denotes | ) |
| T28997 | 108-109 | NN | denotes | B |
| T28996 | 107-108 | -COMMA- | denotes | , |
| T28995 | 106-107 | NN | denotes | A |
| T28994 | 105-106 | -LRB- | denotes | ( |
| T28993 | 99-103 | NN | denotes | TNFα |
| T28992 | 95-98 | CC | denotes | and |
| T28991 | 86-94 | NN | denotes | zVAD.fmk |
| T28990 | 83-85 | IN | denotes | by |
| T28989 | 75-82 | VB | denotes | induced |
| T28988 | 63-74 | NN | denotes | necroptosis |
| T28987 | 60-62 | TO | denotes | to |
| T28986 | 48-59 | VB | denotes | contributes |
| T28985 | 44-47 | NN | denotes | Akt |
| T29099 | 584-591 | VB | denotes | plotted |
| T29098 | 580-583 | VB | denotes | was |
| T29097 | 569-579 | NN | denotes | average±SD |
| T29096 | 567-568 | -COMMA- | denotes | , |
| T29095 | 561-567 | NN | denotes | graphs |
| T29094 | 557-560 | DT | denotes | all |
| T29093 | 554-556 | IN | denotes | In |
| T29092 | 549-552 | NN | denotes | hrs |
| T29091 | 546-548 | CD | denotes | 24 |
| T29090 | 540-545 | IN | denotes | after |
| T29089 | 529-539 | VB | denotes | determined |
| T29088 | 524-528 | VB | denotes | were |
| T29087 | 517-523 | NN | denotes | levels |
| T29086 | 506-516 | NN | denotes | expression |
| T29085 | 502-505 | NN | denotes | Akt |
| T29084 | 498-501 | CC | denotes | and |
| T29083 | 488-497 | NN | denotes | viability |
| T29082 | 483-487 | NN | denotes | Cell |
| T29081 | 478-481 | NN | denotes | hrs |
| T29080 | 476-477 | CD | denotes | 9 |
| T29079 | 472-475 | IN | denotes | for |
| T29078 | 467-471 | NN | denotes | TNFα |
| T29077 | 464-466 | CC | denotes | or |
| T29076 | 455-463 | NN | denotes | zVAD.fmk |
| T29075 | 450-454 | IN | denotes | with |
| T29074 | 442-449 | VB | denotes | treated |
| T29073 | 437-441 | VB | denotes | were |
| T29072 | 433-436 | NN | denotes | hrs |
| T29071 | 430-432 | CD | denotes | 72 |
| T29070 | 426-429 | IN | denotes | for |
| T29069 | 419-425 | NN | denotes | siRNAs |
| T29068 | 414-418 | NN | denotes | Akt3 |
| T29067 | 410-413 | CC | denotes | and |
| T29066 | 408-409 | -COMMA- | denotes | , |
| T29065 | 404-408 | NN | denotes | Akt2 |
| T29064 | 402-403 | -COMMA- | denotes | , |
| T29063 | 398-402 | NN | denotes | Akt1 |
| T29062 | 393-397 | IN | denotes | with |
| T29061 | 381-392 | VB | denotes | transfected |
| T29060 | 375-380 | NN | denotes | cells |
| T29059 | 370-374 | NN | denotes | L929 |
| T29058 | 368-369 | -RRB- | denotes | ) |
| T29057 | 367-368 | NN | denotes | C |
| T29056 | 366-367 | -LRB- | denotes | ( |
| T29055 | 361-365 | NN | denotes | hrs. |
| T29054 | 358-360 | CD | denotes | 24 |
| T29053 | 352-357 | IN | denotes | after |
| T29052 | 341-351 | VB | denotes | determined |
| T29051 | 337-340 | VB | denotes | was |
| T29050 | 327-336 | NN | denotes | viability |
| T29049 | 322-326 | NN | denotes | Cell |
| T29048 | 319-320 | -RRB- | denotes | ) |
| T29047 | 314-319 | NN | denotes | UO126 |
| T29046 | 313-314 | -LRB- | denotes | ( |
| T29045 | 309-312 | NN | denotes | Erk |
| T29044 | 305-308 | CC | denotes | and |
| T29043 | 303-304 | -COMMA- | denotes | , |
| T29042 | 302-303 | -RRB- | denotes | ) |
| T29041 | 294-302 | NN | denotes | PD169316 |
| T29040 | 293-294 | -LRB- | denotes | ( |
| T29039 | 289-292 | NN | denotes | p38 |
| T29038 | 287-288 | -COMMA- | denotes | , |
| T29037 | 286-287 | -RRB- | denotes | ) |
| T29036 | 278-286 | NN | denotes | SP600125 |
| T29035 | 277-278 | -LRB- | denotes | ( |
| T29034 | 273-276 | NN | denotes | JNK |
| T29033 | 271-272 | -COMMA- | denotes | , |
| T29032 | 270-271 | -RRB- | denotes | ) |
| T29031 | 266-270 | CD | denotes | VIII |
| T29030 | 256-265 | NN | denotes | inhibitor |
| R20067 | T28985 | T28986 | arg1Of | Akt,contributes |
| R20068 | T28986 | T28987 | arg1Of | contributes,to |
| R20069 | T28988 | T28987 | arg2Of | necroptosis,to |
| R20070 | T28988 | T28989 | arg2Of | necroptosis,induced |
| R20071 | T28991 | T28992 | arg1Of | zVAD.fmk,and |
| R20072 | T28992 | T28989 | arg1Of | and,induced |
| R20073 | T28992 | T28990 | arg2Of | and,by |
| R20074 | T28993 | T28992 | arg2Of | TNFα,and |
| R20075 | T28995 | T28994 | arg2Of | A,( |
| R20076 | T28995 | T28996 | arg1Of | A,"," |
| R20077 | T28997 | T28996 | arg2Of | B,"," |
| R20078 | T28998 | T28994 | arg3Of | ),( |
| R20079 | T28999 | T28994 | arg1Of | Necroptosis,( |
| R20080 | T28999 | T29000 | arg1Of | Necroptosis,was |
| R20081 | T28999 | T29001 | arg2Of | Necroptosis,induced |
| R20082 | T29001 | T29000 | arg2Of | induced,was |
| R20083 | T29001 | T29021 | arg1Of | induced,in |
| R20084 | T29003 | T29004 | arg1Of | zVAD.fmk,or |
| R20085 | T29004 | T29006 | arg1Of | or,( |
| R20086 | T29004 | T29012 | arg1Of | or,or |
| R20087 | T29005 | T29004 | arg2Of | TNFα,or |
| R20088 | T29008 | T29006 | arg2Of | serum,( |
| R20089 | T29008 | T29007 | arg1Of | serum,full |
| R20090 | T29008 | T29009 | arg1Of | serum,"," |
| R20091 | T29010 | T29009 | arg2Of | A,"," |
| R20092 | T29011 | T29006 | arg3Of | ),( |
| R20093 | T29012 | T29001 | arg1Of | or,induced |
| R20094 | T29012 | T29002 | arg2Of | or,by |
| R20095 | T29014 | T29012 | arg2Of | factors/zVAD.fmk,or |
| R20096 | T29014 | T29013 | arg1Of | factors/zVAD.fmk,growth |
| R20097 | T29014 | T29015 | arg1Of | factors/zVAD.fmk,( |
| R20098 | T29016 | T29015 | arg2Of | serum,( |
| R20099 | T29016 | T29017 | arg1Of | serum,free |
| R20100 | T29016 | T29018 | arg1Of | serum,"," |
| R20101 | T29019 | T29018 | arg2Of | B,"," |
| R20102 | T29020 | T29015 | arg3Of | ),( |
| R20103 | T29023 | T29021 | arg2Of | presence,in |
| R20104 | T29023 | T29022 | arg1Of | presence,the |
| R20105 | T29023 | T29024 | arg1Of | presence,of |
| R20106 | T29025 | T29024 | arg2Of | inhibitors,of |
| R20107 | T29025 | T29026 | arg1Of | inhibitors,of |
| R20108 | T29027 | T29028 | arg1Of | Akt,( |
| R20109 | T29027 | T29033 | arg1Of | Akt,"," |
| R20110 | T29030 | T29028 | arg2Of | inhibitor,( |
| R20111 | T29030 | T29029 | arg1Of | inhibitor,Akt |
| R20112 | T29030 | T29031 | arg1Of | inhibitor,VIII |
| R20113 | T29032 | T29028 | arg3Of | ),( |
| R20114 | T29033 | T29038 | arg1Of | ",","," |
| R20115 | T29034 | T29033 | arg2Of | JNK,"," |
| R20116 | T29034 | T29035 | arg1Of | JNK,( |
| R20117 | T29036 | T29035 | arg2Of | SP600125,( |
| R20118 | T29037 | T29035 | arg3Of | ),( |
| R20119 | T29038 | T29044 | arg1Of | ",",and |
| R20120 | T29039 | T29038 | arg2Of | p38,"," |
| R20121 | T29039 | T29040 | arg1Of | p38,( |
| R20122 | T29041 | T29040 | arg2Of | PD169316,( |
| R20123 | T29042 | T29040 | arg3Of | ),( |
| R20124 | T29044 | T29026 | arg2Of | and,of |
| R20125 | T29044 | T29043 | arg1Of | and,"," |
| R20126 | T29045 | T29044 | arg2Of | Erk,and |
| R20127 | T29045 | T29046 | arg1Of | Erk,( |
| R20128 | T29047 | T29046 | arg2Of | UO126,( |
| R20129 | T29048 | T29046 | arg3Of | ),( |
| R20130 | T29050 | T29049 | arg1Of | viability,Cell |
| R20131 | T29050 | T29051 | arg1Of | viability,was |
| R20132 | T29050 | T29052 | arg2Of | viability,determined |
| R20133 | T29052 | T29051 | arg2Of | determined,was |
| R20134 | T29052 | T29053 | arg1Of | determined,after |
| R20135 | T29055 | T29053 | arg2Of | hrs.,after |
| R20136 | T29055 | T29054 | arg1Of | hrs.,24 |
| R20137 | T29055 | T29056 | arg1Of | hrs.,( |
| R20138 | T29057 | T29056 | arg2Of | C,( |
| R20139 | T29058 | T29056 | arg3Of | ),( |
| R20140 | T29060 | T29059 | arg1Of | cells,L929 |
| R20141 | T29060 | T29061 | arg2Of | cells,transfected |
| R20142 | T29060 | T29073 | arg1Of | cells,were |
| R20143 | T29060 | T29074 | arg2Of | cells,treated |
| R20144 | T29061 | T29062 | arg1Of | transfected,with |
| R20145 | T29063 | T29064 | arg1Of | Akt1,"," |
| R20146 | T29064 | T29067 | arg1Of | ",",and |
| R20147 | T29065 | T29064 | arg2Of | Akt2,"," |
| R20148 | T29067 | T29062 | arg2Of | and,with |
| R20149 | T29067 | T29066 | arg1Of | and,"," |
| R20150 | T29067 | T29070 | arg1Of | and,for |
| R20151 | T29069 | T29067 | arg2Of | siRNAs,and |
| R20152 | T29069 | T29068 | arg1Of | siRNAs,Akt3 |
| R20153 | T29072 | T29070 | arg2Of | hrs,for |
| R20154 | T29072 | T29071 | arg1Of | hrs,72 |
| R20155 | T29074 | T29051 | modOf | treated,was |
| R20156 | T29074 | T29073 | arg2Of | treated,were |
| R20157 | T29074 | T29075 | arg1Of | treated,with |
| R20158 | T29076 | T29077 | arg1Of | zVAD.fmk,or |
| R20159 | T29077 | T29075 | arg2Of | or,with |
| R20160 | T29077 | T29079 | arg1Of | or,for |
| R20161 | T29078 | T29077 | arg2Of | TNFα,or |
| R20162 | T29081 | T29079 | arg2Of | hrs,for |
| R20163 | T29081 | T29080 | arg1Of | hrs,9 |
| R20164 | T29083 | T29082 | arg1Of | viability,Cell |
| R20165 | T29083 | T29084 | arg1Of | viability,and |
| R20166 | T29084 | T29088 | arg1Of | and,were |
| R20167 | T29084 | T29089 | arg2Of | and,determined |
| R20168 | T29087 | T29084 | arg2Of | levels,and |
| R20169 | T29087 | T29085 | arg1Of | levels,Akt |
| R20170 | T29087 | T29086 | arg1Of | levels,expression |
| R20171 | T29089 | T29088 | arg2Of | determined,were |
| R20172 | T29089 | T29090 | arg1Of | determined,after |
| R20173 | T29092 | T29090 | arg2Of | hrs,after |
| R20174 | T29092 | T29091 | arg1Of | hrs,24 |
| R20175 | T29095 | T29093 | arg2Of | graphs,In |
| R20176 | T29095 | T29094 | arg1Of | graphs,all |
| R20177 | T29097 | T29098 | arg1Of | average±SD,was |
| R20178 | T29097 | T29099 | arg2Of | average±SD,plotted |
| R20179 | T29099 | T29093 | arg1Of | plotted,In |
| R20180 | T29099 | T29096 | arg1Of | plotted,"," |
| R20181 | T29099 | T29098 | arg2Of | plotted,was |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T28961 | 467-471 | Protein | denotes | TNFα |
| T28960 | 414-425 | Protein | denotes | Akt3 siRNAs |
| T28959 | 404-408 | Protein | denotes | Akt2 |
| T28958 | 398-402 | Protein | denotes | Akt1 |
| T28957 | 150-154 | Protein | denotes | TNFα |
| T28956 | 99-103 | Protein | denotes | TNFα |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T29121 | 467-471 | http://www.uniprot.org/uniprot/P01375 | denotes | TNFα |
| T29120 | 150-154 | http://www.uniprot.org/uniprot/P01375 | denotes | TNFα |
| T29119 | 99-103 | http://www.uniprot.org/uniprot/P01375 | denotes | TNFα |
| T29118 | 502-505 | http://www.uniprot.org/uniprot/Q9Y243 | denotes | Akt |
| T29117 | 252-255 | http://www.uniprot.org/uniprot/Q9Y243 | denotes | Akt |
| T29116 | 247-250 | http://www.uniprot.org/uniprot/Q9Y243 | denotes | Akt |
| T29115 | 44-47 | http://www.uniprot.org/uniprot/Q9Y243 | denotes | Akt |
| T29114 | 502-505 | http://www.uniprot.org/uniprot/P31751 | denotes | Akt |
| T29113 | 252-255 | http://www.uniprot.org/uniprot/P31751 | denotes | Akt |
| T29112 | 247-250 | http://www.uniprot.org/uniprot/P31751 | denotes | Akt |
| T29111 | 44-47 | http://www.uniprot.org/uniprot/P31751 | denotes | Akt |
| T29108 | 247-250 | http://www.uniprot.org/uniprot/P31749 | denotes | Akt |
| T29107 | 44-47 | http://www.uniprot.org/uniprot/P31749 | denotes | Akt |
| T29110 | 502-505 | http://www.uniprot.org/uniprot/P31749 | denotes | Akt |
| T29109 | 252-255 | http://www.uniprot.org/uniprot/P31749 | denotes | Akt |
UBERON-AE
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T28944 | 199-204 | http://purl.obolibrary.org/obo/UBERON_0001977 | denotes | serum |
| T28943 | 161-166 | http://purl.obolibrary.org/obo/UBERON_0001977 | denotes | serum |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T28968 | 289-292 | http://purl.obolibrary.org/obo/GO_0004707 | denotes | p38 |
| T28967 | 273-276 | http://purl.obolibrary.org/obo/GO_0004705 | denotes | JNK |
| T28966 | 174-180 | http://purl.obolibrary.org/obo/GO_0040007 | denotes | growth |
| T28965 | 111-122 | http://purl.obolibrary.org/obo/GO_0097528 | denotes | Necroptosis |
| T28964 | 63-74 | http://purl.obolibrary.org/obo/GO_0097528 | denotes | necroptosis |
| T28963 | 111-122 | http://purl.obolibrary.org/obo/GO_0070266 | denotes | Necroptosis |
| T28962 | 63-74 | http://purl.obolibrary.org/obo/GO_0070266 | denotes | necroptosis |
GO-MF
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T28970 | 289-292 | http://purl.obolibrary.org/obo/GO_0004707 | denotes | p38 |
| T28969 | 273-276 | http://purl.obolibrary.org/obo/GO_0004705 | denotes | JNK |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T28972 | 483-487 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cell |
| T28971 | 322-326 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cell |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T28949 | 554-592 | Sentence | denotes | In all graphs, average±SD was plotted. |
| T28948 | 483-553 | Sentence | denotes | Cell viability and Akt expression levels were determined after 24 hrs. |
| T28947 | 322-482 | Sentence | denotes | Cell viability was determined after 24 hrs. (C) L929 cells transfected with Akt1, Akt2, and Akt3 siRNAs for 72 hrs were treated with zVAD.fmk or TNFα for 9 hrs. |
| T28946 | 105-321 | Sentence | denotes | (A,B) Necroptosis was induced by zVAD.fmk or TNFα (full serum, A) or growth factors/zVAD.fmk (serum free, B) in the presence of inhibitors of Akt (Akt inhibitor VIII), JNK (SP600125), p38 (PD169316), and Erk (UO126). |
| T28945 | 44-104 | Sentence | denotes | Akt contributes to necroptosis induced by zVAD.fmk and TNFα. |
| T70 | 0-104 | Sentence | denotes | 10.1371/journal.pone.0056576.g002 Figure 2 Akt contributes to necroptosis induced by zVAD.fmk and TNFα. |
| T71 | 105-321 | Sentence | denotes | (A,B) Necroptosis was induced by zVAD.fmk or TNFα (full serum, A) or growth factors/zVAD.fmk (serum free, B) in the presence of inhibitors of Akt (Akt inhibitor VIII), JNK (SP600125), p38 (PD169316), and Erk (UO126). |
| T72 | 322-482 | Sentence | denotes | Cell viability was determined after 24 hrs. (C) L929 cells transfected with Akt1, Akt2, and Akt3 siRNAs for 72 hrs were treated with zVAD.fmk or TNFα for 9 hrs. |
| T73 | 483-553 | Sentence | denotes | Cell viability and Akt expression levels were determined after 24 hrs. |
| T74 | 554-592 | Sentence | denotes | In all graphs, average±SD was plotted. |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T28984 | 467-471 | Protein | denotes | TNFα |
| T28983 | 414-425 | Protein | denotes | Akt3 siRNAs |
| T28982 | 404-408 | Protein | denotes | Akt2 |
| T28981 | 398-402 | Protein | denotes | Akt1 |
| T28980 | 150-154 | Protein | denotes | TNFα |
| T28979 | 99-103 | Protein | denotes | TNFα |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T29106 | 381-392 | Gene_expression | denotes | transfected |
| T29105 | 467-471 | Protein | denotes | TNFα |
| T29104 | 414-425 | Protein | denotes | Akt3 siRNAs |
| T29103 | 404-408 | Protein | denotes | Akt2 |
| T29102 | 398-402 | Protein | denotes | Akt1 |
| T29101 | 150-154 | Protein | denotes | TNFα |
| T29100 | 99-103 | Protein | denotes | TNFα |
| R20182 | T29102 | T29106 | themeOf | Akt1,transfected |
| R20183 | T29103 | T29106 | themeOf | Akt2,transfected |
| R20184 | T29104 | T29106 | themeOf | Akt3 siRNAs,transfected |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T29143 | 381-392 | Gene_expression | denotes | transfected |
| T29142 | 75-82 | Positive_regulation | denotes | induced |
| T29141 | 467-471 | Protein | denotes | TNFα |
| T29140 | 414-425 | Protein | denotes | Akt3 siRNAs |
| T29139 | 404-408 | Protein | denotes | Akt2 |
| T29138 | 398-402 | Protein | denotes | Akt1 |
| T29137 | 150-154 | Protein | denotes | TNFα |
| T29136 | 99-103 | Protein | denotes | TNFα |
| R20189 | T29136 | T29142 | themeOf | TNFα,induced |
| R20190 | T29138 | T29143 | themeOf | Akt1,transfected |
| R20191 | T29139 | T29143 | themeOf | Akt2,transfected |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T29128 | 381-392 | Gene_expression | denotes | transfected |
| T29127 | 467-471 | Protein | denotes | TNFα |
| T29126 | 414-425 | Protein | denotes | Akt3 siRNAs |
| T29125 | 404-408 | Protein | denotes | Akt2 |
| T29124 | 398-402 | Protein | denotes | Akt1 |
| T29123 | 150-154 | Protein | denotes | TNFα |
| T29122 | 99-103 | Protein | denotes | TNFα |
| R20185 | T29124 | T29128 | themeOf | Akt1,transfected |
| R20186 | T29125 | T29128 | themeOf | Akt2,transfected |
| R20187 | T29126 | T29128 | themeOf | Akt3 siRNAs,transfected |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T29370 | 502-523 | Gene_expression | denotes | Akt expression levels |
| T29369 | 476-481 | Protein | denotes | 9 hrs |
| T29368 | 189-197 | Entity | denotes | zVAD.fmk |
| T29367 | 370-436 | Entity | denotes | L929 cells transfected with Akt1, Akt2, and Akt3 siRNAs for 72 hrs |
| T29366 | 483-497 | Entity | denotes | Cell viability |
| T29365 | 247-276 | Protein | denotes | Akt (Akt inhibitor VIII), JNK |
| T29364 | 404-408 | Protein | denotes | Akt2 |
| T29363 | 430-436 | Protein | denotes | 72 hrs |
| T29362 | 150-154 | Protein | denotes | TNFα |
| T29361 | 247-272 | Protein | denotes | Akt (Akt inhibitor VIII), |
| T29360 | 44-47 | Protein | denotes | Akt |
| T29359 | 289-292 | Protein | denotes | p38 |
| T29358 | 86-94 | Entity | denotes | zVAD.fmk |
| T29357 | 358-364 | Protein | denotes | 24 hrs |
| T29356 | 252-270 | Entity | denotes | Akt inhibitor VIII |
| T29355 | 502-505 | Protein | denotes | Akt |
| T29354 | 546-552 | Protein | denotes | 24 hrs |
| T29353 | 233-276 | Entity | denotes | inhibitors of Akt (Akt inhibitor VIII), JNK |
| T29352 | 455-463 | Entity | denotes | zVAD.fmk |
| T29351 | 398-402 | Protein | denotes | Akt1 |
| T29350 | 138-146 | Entity | denotes | zVAD.fmk |
| T29349 | 414-425 | Protein | denotes | Akt3 siRNAs |
| T29348 | 370-374 | Entity | denotes | L929 |
| T29347 | 467-481 | Protein | denotes | TNFα for 9 hrs |
| T29346 | 99-103 | Protein | denotes | TNFα |
| T29345 | 309-312 | Protein | denotes | Erk |
| R20359 | T29355 | T29370 | themeOf | Akt,Akt expression levels |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T29306 | 591-592 | . | denotes | . |
| T29305 | 584-591 | VBN | denotes | plotted |
| T29304 | 580-583 | VBD | denotes | was |
| T29303 | 577-579 | NNP | denotes | SD |
| T29302 | 576-577 | NN | denotes | ± |
| T29301 | 569-576 | JJ | denotes | average |
| T29300 | 567-568 | , | denotes | , |
| T29299 | 561-567 | NNS | denotes | graphs |
| T29298 | 557-560 | DT | denotes | all |
| T29297 | 554-556 | IN | denotes | In |
| T29296 | 552-553 | . | denotes | . |
| T29295 | 549-552 | NNS | denotes | hrs |
| T29294 | 546-548 | CD | denotes | 24 |
| T29293 | 540-545 | IN | denotes | after |
| T29292 | 529-539 | VBN | denotes | determined |
| T29291 | 524-528 | VBD | denotes | were |
| T29290 | 517-523 | NNS | denotes | levels |
| T29289 | 506-516 | NN | denotes | expression |
| T29288 | 502-505 | NNP | denotes | Akt |
| T29287 | 498-501 | CC | denotes | and |
| T29286 | 488-497 | NN | denotes | viability |
| T29285 | 483-487 | NNP | denotes | Cell |
| T29284 | 481-482 | . | denotes | . |
| T29283 | 478-481 | NNS | denotes | hrs |
| T29282 | 476-477 | CD | denotes | 9 |
| T29281 | 472-475 | IN | denotes | for |
| T29280 | 467-471 | NNP | denotes | TNFα |
| T29279 | 464-466 | CC | denotes | or |
| T29278 | 455-463 | NNP | denotes | zVAD.fmk |
| T29277 | 450-454 | IN | denotes | with |
| T29276 | 442-449 | VBN | denotes | treated |
| T29275 | 437-441 | VBD | denotes | were |
| T29274 | 433-436 | NNS | denotes | hrs |
| T29273 | 430-432 | CD | denotes | 72 |
| T29272 | 426-429 | IN | denotes | for |
| T29271 | 419-425 | NNPS | denotes | siRNAs |
| T29270 | 414-418 | NNP | denotes | Akt3 |
| T29269 | 410-413 | CC | denotes | and |
| T29268 | 408-409 | , | denotes | , |
| T29267 | 404-408 | NNP | denotes | Akt2 |
| T29266 | 402-403 | , | denotes | , |
| T29265 | 398-402 | NNP | denotes | Akt1 |
| T29264 | 393-397 | IN | denotes | with |
| T29263 | 381-392 | VBN | denotes | transfected |
| T29262 | 375-380 | NNS | denotes | cells |
| T29261 | 370-374 | CD | denotes | L929 |
| T29260 | 368-369 | -RRB- | denotes | ) |
| T29259 | 367-368 | $ | denotes | C |
| T29258 | 366-367 | -LRB- | denotes | ( |
| T29257 | 364-365 | . | denotes | . |
| T29256 | 361-364 | NNS | denotes | hrs |
| T29255 | 358-360 | CD | denotes | 24 |
| T29254 | 352-357 | IN | denotes | after |
| T29253 | 341-351 | VBN | denotes | determined |
| T29252 | 337-340 | VBD | denotes | was |
| T29251 | 327-336 | NN | denotes | viability |
| T29250 | 322-326 | NNP | denotes | Cell |
| T29249 | 320-321 | . | denotes | . |
| T29248 | 319-320 | -RRB- | denotes | ) |
| T29247 | 314-319 | NNP | denotes | UO126 |
| T29246 | 313-314 | -LRB- | denotes | ( |
| T29245 | 309-312 | NNP | denotes | Erk |
| T29244 | 305-308 | CC | denotes | and |
| T29243 | 303-304 | , | denotes | , |
| T29242 | 302-303 | -RRB- | denotes | ) |
| T29241 | 294-302 | NNP | denotes | PD169316 |
| T29240 | 293-294 | -LRB- | denotes | ( |
| T29239 | 289-292 | JJ | denotes | p38 |
| T29238 | 287-288 | , | denotes | , |
| T29237 | 286-287 | -RRB- | denotes | ) |
| T29236 | 278-286 | NNP | denotes | SP600125 |
| T29235 | 277-278 | -LRB- | denotes | ( |
| T29234 | 273-276 | NNP | denotes | JNK |
| T29233 | 271-272 | , | denotes | , |
| T29232 | 270-271 | -RRB- | denotes | ) |
| T29231 | 266-270 | NNP | denotes | VIII |
| T29230 | 256-265 | NN | denotes | inhibitor |
| T29229 | 252-255 | NNP | denotes | Akt |
| T29228 | 251-252 | -LRB- | denotes | ( |
| T29227 | 247-250 | NNP | denotes | Akt |
| T29226 | 244-246 | IN | denotes | of |
| T29225 | 233-243 | NNS | denotes | inhibitors |
| T29224 | 230-232 | IN | denotes | of |
| T29223 | 221-229 | NN | denotes | presence |
| T29222 | 217-220 | DT | denotes | the |
| T29221 | 214-216 | IN | denotes | in |
| T29220 | 212-213 | -RRB- | denotes | ) |
| T29219 | 211-212 | NNP | denotes | B |
| T29218 | 209-210 | , | denotes | , |
| T29217 | 205-209 | JJ | denotes | free |
| T29216 | 199-204 | NN | denotes | serum |
| T29215 | 198-199 | -LRB- | denotes | ( |
| T29214 | 194-197 | NN | denotes | fmk |
| T29213 | 193-194 | . | denotes | . |
| T29212 | 181-193 | NNP | denotes | factors/zVAD |
| T29211 | 174-180 | NN | denotes | growth |
| T29210 | 171-173 | CC | denotes | or |
| T29209 | 169-170 | -RRB- | denotes | ) |
| T29208 | 168-169 | NNP | denotes | A |
| T29207 | 166-167 | , | denotes | , |
| T29206 | 161-166 | NN | denotes | serum |
| T29205 | 156-160 | JJ | denotes | full |
| T29204 | 155-156 | -LRB- | denotes | ( |
| T29203 | 150-154 | NNP | denotes | TNFα |
| T29202 | 147-149 | CC | denotes | or |
| T29201 | 138-146 | NNP | denotes | zVAD.fmk |
| T29200 | 135-137 | IN | denotes | by |
| T29199 | 127-134 | VBN | denotes | induced |
| T29198 | 123-126 | VBD | denotes | was |
| T29197 | 111-122 | NNP | denotes | Necroptosis |
| T29196 | 109-110 | -RRB- | denotes | ) |
| T29195 | 108-109 | NNP | denotes | B |
| T29194 | 107-108 | , | denotes | , |
| T29193 | 106-107 | DT | denotes | A |
| T29192 | 105-106 | -LRB- | denotes | ( |
| T29191 | 103-104 | . | denotes | . |
| T29190 | 99-103 | NNP | denotes | TNFα |
| T29189 | 95-98 | CC | denotes | and |
| T29188 | 86-94 | NNP | denotes | zVAD.fmk |
| T29187 | 83-85 | IN | denotes | by |
| T29186 | 75-82 | VBN | denotes | induced |
| T29185 | 63-74 | NN | denotes | necroptosis |
| T29184 | 60-62 | TO | denotes | to |
| T29183 | 48-59 | VBZ | denotes | contributes |
| T29182 | 44-47 | NNP | denotes | Akt |
| R20213 | T29182 | T29183 | nsubj | Akt,contributes |
| R20214 | T29183 | T29183 | ROOT | contributes,contributes |
| R20215 | T29184 | T29183 | prep | to,contributes |
| R20216 | T29185 | T29184 | pobj | necroptosis,to |
| R20217 | T29186 | T29185 | acl | induced,necroptosis |
| R20218 | T29187 | T29186 | agent | by,induced |
| R20219 | T29188 | T29187 | pobj | zVAD.fmk,by |
| R20220 | T29189 | T29188 | cc | and,zVAD.fmk |
| R20221 | T29190 | T29188 | conj | TNFα,zVAD.fmk |
| R20222 | T29191 | T29183 | punct | .,contributes |
| R20223 | T29192 | T29199 | punct | (,induced |
| R20224 | T29193 | T29199 | intj | A,induced |
| R20225 | T29194 | T29199 | punct | ",",induced |
| R20226 | T29195 | T29197 | nmod | B,Necroptosis |
| R20227 | T29196 | T29197 | punct | ),Necroptosis |
| R20228 | T29197 | T29199 | nsubjpass | Necroptosis,induced |
| R20229 | T29198 | T29199 | auxpass | was,induced |
| R20230 | T29199 | T29199 | ROOT | induced,induced |
| R20231 | T29200 | T29199 | agent | by,induced |
| R20232 | T29201 | T29200 | pobj | zVAD.fmk,by |
| R20233 | T29202 | T29201 | cc | or,zVAD.fmk |
| R20234 | T29203 | T29201 | conj | TNFα,zVAD.fmk |
| R20235 | T29204 | T29203 | punct | (,TNFα |
| R20236 | T29205 | T29206 | amod | full,serum |
| R20237 | T29206 | T29203 | appos | serum,TNFα |
| R20238 | T29207 | T29203 | punct | ",",TNFα |
| R20239 | T29208 | T29203 | conj | A,TNFα |
| R20240 | T29209 | T29208 | punct | ),A |
| R20241 | T29210 | T29199 | cc | or,induced |
| R20242 | T29211 | T29199 | conj | growth,induced |
| R20243 | T29212 | T29211 | appos | factors/zVAD,growth |
| R20244 | T29213 | T29199 | punct | .,induced |
| R20245 | T29214 | T29214 | ROOT | fmk,fmk |
| R20246 | T29215 | T29219 | punct | (,B |
| R20247 | T29216 | T29217 | npadvmod | serum,free |
| R20248 | T29217 | T29219 | amod | free,B |
| R20249 | T29218 | T29219 | punct | ",",B |
| R20250 | T29219 | T29214 | appos | B,fmk |
| R20251 | T29220 | T29219 | punct | ),B |
| R20252 | T29221 | T29214 | prep | in,fmk |
| R20253 | T29222 | T29223 | det | the,presence |
| R20254 | T29223 | T29221 | pobj | presence,in |
| R20255 | T29224 | T29223 | prep | of,presence |
| R20256 | T29225 | T29224 | pobj | inhibitors,of |
| R20257 | T29226 | T29225 | prep | of,inhibitors |
| R20258 | T29227 | T29226 | pobj | Akt,of |
| R20259 | T29228 | T29231 | punct | (,VIII |
| R20260 | T29229 | T29231 | compound | Akt,VIII |
| R20261 | T29230 | T29231 | compound | inhibitor,VIII |
| R20262 | T29231 | T29227 | appos | VIII,Akt |
| R20263 | T29232 | T29227 | punct | ),Akt |
| R20264 | T29233 | T29227 | punct | ",",Akt |
| R20265 | T29234 | T29227 | conj | JNK,Akt |
| R20266 | T29235 | T29236 | punct | (,SP600125 |
| R20267 | T29236 | T29234 | appos | SP600125,JNK |
| R20268 | T29237 | T29234 | punct | ),JNK |
| R20269 | T29238 | T29214 | punct | ",",fmk |
| R20270 | T29239 | T29214 | amod | p38,fmk |
| R20271 | T29240 | T29241 | punct | (,PD169316 |
| R20272 | T29241 | T29239 | appos | PD169316,p38 |
| R20273 | T29242 | T29241 | punct | ),PD169316 |
| R20274 | T29243 | T29239 | punct | ",",p38 |
| R20275 | T29244 | T29239 | cc | and,p38 |
| R20276 | T29245 | T29239 | conj | Erk,p38 |
| R20277 | T29246 | T29247 | punct | (,UO126 |
| R20278 | T29247 | T29245 | appos | UO126,Erk |
| R20279 | T29248 | T29245 | punct | ),Erk |
| R20280 | T29249 | T29214 | punct | .,fmk |
| R20281 | T29250 | T29251 | compound | Cell,viability |
| R20282 | T29251 | T29253 | nsubjpass | viability,determined |
| R20283 | T29252 | T29253 | auxpass | was,determined |
| R20284 | T29253 | T29253 | ROOT | determined,determined |
| R20285 | T29254 | T29253 | prep | after,determined |
| R20286 | T29255 | T29256 | nummod | 24,hrs |
| R20287 | T29256 | T29254 | pobj | hrs,after |
| R20288 | T29257 | T29253 | punct | .,determined |
| R20289 | T29258 | T29259 | punct | (,C |
| R20290 | T29259 | T29262 | nmod | C,cells |
| R20291 | T29260 | T29259 | punct | ),C |
| R20292 | T29261 | T29262 | nummod | L929,cells |
| R20293 | T29262 | T29276 | nsubjpass | cells,treated |
| R20294 | T29263 | T29262 | acl | transfected,cells |
| R20295 | T29264 | T29263 | prep | with,transfected |
| R20296 | T29265 | T29264 | pobj | Akt1,with |
| R20297 | T29266 | T29265 | punct | ",",Akt1 |
| R20298 | T29267 | T29265 | conj | Akt2,Akt1 |
| R20299 | T29268 | T29267 | punct | ",",Akt2 |
| R20300 | T29269 | T29267 | cc | and,Akt2 |
| R20301 | T29270 | T29267 | conj | Akt3,Akt2 |
| R20302 | T29271 | T29265 | appos | siRNAs,Akt1 |
| R20303 | T29272 | T29263 | prep | for,transfected |
| R20304 | T29273 | T29274 | nummod | 72,hrs |
| R20305 | T29274 | T29272 | pobj | hrs,for |
| R20306 | T29275 | T29276 | auxpass | were,treated |
| R20307 | T29276 | T29276 | ROOT | treated,treated |
| R20308 | T29277 | T29276 | prep | with,treated |
| R20309 | T29278 | T29277 | pobj | zVAD.fmk,with |
| R20310 | T29279 | T29278 | cc | or,zVAD.fmk |
| R20311 | T29280 | T29278 | conj | TNFα,zVAD.fmk |
| R20312 | T29281 | T29276 | prep | for,treated |
| R20313 | T29282 | T29283 | nummod | 9,hrs |
| R20314 | T29283 | T29281 | pobj | hrs,for |
| R20315 | T29284 | T29276 | punct | .,treated |
| R20316 | T29285 | T29286 | compound | Cell,viability |
| R20317 | T29286 | T29292 | nsubjpass | viability,determined |
| R20318 | T29287 | T29286 | cc | and,viability |
| R20319 | T29288 | T29290 | compound | Akt,levels |
| R20320 | T29289 | T29290 | compound | expression,levels |
| R20321 | T29290 | T29286 | conj | levels,viability |
| R20322 | T29291 | T29292 | auxpass | were,determined |
| R20323 | T29292 | T29292 | ROOT | determined,determined |
| R20324 | T29293 | T29292 | prep | after,determined |
| R20325 | T29294 | T29295 | nummod | 24,hrs |
| R20326 | T29295 | T29293 | pobj | hrs,after |
| R20327 | T29296 | T29292 | punct | .,determined |
| R20328 | T29297 | T29305 | prep | In,plotted |
| R20329 | T29298 | T29299 | det | all,graphs |
| R20330 | T29299 | T29297 | pobj | graphs,In |
| R20331 | T29300 | T29305 | punct | ",",plotted |
| R20332 | T29301 | T29302 | amod | average,± |
| R20333 | T29302 | T29303 | compound | ±,SD |
| R20334 | T29303 | T29305 | nsubjpass | SD,plotted |
| R20335 | T29304 | T29305 | auxpass | was,plotted |
| R20336 | T29305 | T29305 | ROOT | plotted,plotted |
| R20337 | T29306 | T29305 | punct | .,plotted |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T29181 | 506-516 | Gene_expression | denotes | expression |
| T29180 | 502-505 | Protein | denotes | Akt |
| T29179 | 381-392 | Positive_regulation | denotes | transfected |
| T29178 | 381-392 | Positive_regulation | denotes | transfected |
| T29177 | 381-392 | Positive_regulation | denotes | transfected |
| T29176 | 381-392 | Gene_expression | denotes | transfected |
| T29175 | 381-392 | Gene_expression | denotes | transfected |
| T29174 | 381-392 | Gene_expression | denotes | transfected |
| T29173 | 455-471 | Protein | denotes | zVAD.fmk or TNFα |
| T29172 | 414-425 | Protein | denotes | Akt3 siRNAs |
| T29171 | 404-408 | Protein | denotes | Akt2 |
| T29170 | 398-402 | Protein | denotes | Akt1 |
| T29169 | 233-243 | Negative_regulation | denotes | inhibitors |
| T29168 | 233-243 | Negative_regulation | denotes | inhibitors |
| T29167 | 233-243 | Negative_regulation | denotes | inhibitors |
| T29166 | 233-243 | Negative_regulation | denotes | inhibitors |
| T29165 | 256-265 | Negative_regulation | denotes | inhibitor |
| T29164 | 256-265 | Negative_regulation | denotes | inhibitor |
| T29163 | 256-265 | Negative_regulation | denotes | inhibitor |
| T29162 | 256-265 | Negative_regulation | denotes | inhibitor |
| T29161 | 233-243 | Negative_regulation | denotes | inhibitors |
| T29160 | 233-243 | Negative_regulation | denotes | inhibitors |
| T29159 | 233-243 | Negative_regulation | denotes | inhibitors |
| T29158 | 233-243 | Negative_regulation | denotes | inhibitors |
| T29157 | 233-243 | Negative_regulation | denotes | inhibitors |
| T29156 | 233-243 | Negative_regulation | denotes | inhibitors |
| T29155 | 111-122 | Entity | denotes | Necroptosis |
| T29154 | 314-319 | Protein | denotes | UO126 |
| T29153 | 309-312 | Protein | denotes | Erk |
| T29152 | 294-302 | Protein | denotes | PD169316 |
| T29151 | 289-292 | Protein | denotes | p38 |
| T29150 | 273-276 | Protein | denotes | JNK |
| T29149 | 252-255 | Protein | denotes | Akt |
| T29148 | 247-250 | Protein | denotes | Akt |
| T29147 | 138-154 | Protein | denotes | zVAD.fmk or TNFα |
| T29146 | 99-103 | Protein | denotes | TNFα |
| T29145 | 86-94 | Protein | denotes | zVAD.fmk |
| T29144 | 44-47 | Protein | denotes | Akt |
| R20192 | T29148 | T29156 | themeOf | Akt,inhibitors |
| R20193 | T29148 | T29162 | themeOf | Akt,inhibitor |
| R20194 | T29149 | T29163 | themeOf | Akt,inhibitor |
| R20195 | T29150 | T29157 | themeOf | JNK,inhibitors |
| R20196 | T29151 | T29158 | themeOf | p38,inhibitors |
| R20197 | T29151 | T29164 | themeOf | p38,inhibitor |
| R20198 | T29152 | T29159 | themeOf | PD169316,inhibitors |
| R20199 | T29153 | T29160 | themeOf | Erk,inhibitors |
| R20200 | T29153 | T29165 | themeOf | Erk,inhibitor |
| R20201 | T29154 | T29161 | themeOf | UO126,inhibitors |
| R20202 | T29162 | T29166 | themeOf | inhibitor,inhibitors |
| R20203 | T29163 | T29167 | themeOf | inhibitor,inhibitors |
| R20204 | T29164 | T29168 | themeOf | inhibitor,inhibitors |
| R20205 | T29165 | T29169 | themeOf | inhibitor,inhibitors |
| R20206 | T29170 | T29174 | themeOf | Akt1,transfected |
| R20207 | T29171 | T29175 | themeOf | Akt2,transfected |
| R20208 | T29172 | T29176 | themeOf | Akt3 siRNAs,transfected |
| R20209 | T29174 | T29177 | themeOf | transfected,transfected |
| R20210 | T29175 | T29178 | themeOf | transfected,transfected |
| R20211 | T29176 | T29179 | themeOf | transfected,transfected |
| R20212 | T29180 | T29181 | themeOf | Akt,expression |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T28942 | 506-516 | Gene_expression | denotes | expression |
| T28941 | 467-471 | Protein | denotes | TNFα |
| T28940 | 414-425 | Protein | denotes | Akt3 siRNAs |
| T28939 | 404-408 | Protein | denotes | Akt2 |
| T28938 | 398-402 | Protein | denotes | Akt1 |
| T28937 | 256-265 | Negative_regulation | denotes | inhibitor |
| T28936 | 150-154 | Protein | denotes | TNFα |
| T28935 | 99-103 | Protein | denotes | TNFα |
| T28934 | 75-82 | Positive_regulation | denotes | induced |
| T28933 | 467-471 | Protein | denotes | TNFα |
| T28932 | 414-425 | Protein | denotes | Akt3 siRNAs |
| T28931 | 404-408 | Protein | denotes | Akt2 |
| T28930 | 398-402 | Protein | denotes | Akt1 |
| T28929 | 150-154 | Protein | denotes | TNFα |
| T28928 | 99-103 | Protein | denotes | TNFα |