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PMC:3585731 / 1065-1240 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T28 89-99 Gene_expression denotes production
T20 84-88 Protein denotes TNFα
R4 T20 T28 themeOf TNFα,production

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T333 165-168 JJ denotes new
T332 157-164 VB denotes provide
T331 149-156 NN denotes results
T330 145-148 PRP-DOLLAR- denotes our
T329 143-144 -COMMA- denotes ,
T328 136-143 RB denotes Overall
T327 129-134 NN denotes death
T326 124-128 NN denotes cell
T325 121-123 TO denotes to
T324 108-120 VB denotes contributing
T323 100-107 IN denotes without
T322 89-99 NN denotes production
T321 84-88 NN denotes TNFα
T320 61-83 JJ denotes necroptosis-associated
T319 56-60 IN denotes over
T318 48-55 NN denotes control
T317 38-47 VB denotes exhibited
T316 34-37 NN denotes Akt
T315 32-33 -COMMA- denotes ,
T314 21-32 NN denotes macrophages
T313 17-20 CC denotes and
T312 5-16 NN denotes fibroblasts
T311 0-4 NN denotes lung
R169 T312 T311 arg1Of fibroblasts,lung
R170 T312 T313 arg1Of fibroblasts,and
R172 T314 T313 arg2Of macrophages,and
R173 T316 T317 arg1Of Akt,exhibited
R174 T316 T324 arg1Of Akt,contributing
R176 T317 T315 arg1Of exhibited,","
R177 T317 T319 arg1Of exhibited,over
R178 T317 T323 arg1Of exhibited,without
R179 T318 T317 arg2Of control,exhibited
R180 T322 T319 arg2Of production,over
R181 T322 T320 arg1Of production,necroptosis-associated
R182 T322 T321 arg1Of production,TNFα
R183 T324 T323 arg2Of contributing,without
R184 T324 T325 arg1Of contributing,to
R185 T327 T325 arg2Of death,to
R186 T327 T326 arg1Of death,cell
R187 T331 T330 arg1Of results,our
R188 T331 T332 arg1Of results,provide
R189 T332 T328 arg1Of provide,Overall
R190 T332 T329 arg1Of provide,","

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T97 84-88 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T404 84-88 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T399 34-37 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T392 34-37 http://www.uniprot.org/uniprot/P31751 denotes Akt
T385 34-37 http://www.uniprot.org/uniprot/P31749 denotes Akt

UBERON-AE

Id Subject Object Predicate Lexical cue
T59 0-4 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung

GO-BP

Id Subject Object Predicate Lexical cue
T122 129-134 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T119 124-134 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T113 61-72 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T105 61-72 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-CC

Id Subject Object Predicate Lexical cue
T139 124-128 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

simple1

Id Subject Object Predicate Lexical cue
T152 84-88 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T362 84-88 Protein denotes TNFα
T369 89-99 Gene_expression denotes production
R454 T362 T369 themeOf TNFα,production

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T450 84-88 Protein denotes TNFα
T455 89-99 Gene_expression denotes production
R472 T450 T455 themeOf TNFα,production

DLUT931

Id Subject Object Predicate Lexical cue
T427 61-83 Positive_regulation denotes necroptosis-associated
T426 89-99 Gene_expression denotes production
T419 84-88 Protein denotes TNFα
R211 T426 T427 themeOf production,necroptosis-associated
R461 T419 T426 themeOf TNFα,production

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T759 61-99 Gene_expression denotes necroptosis-associated TNFα production
T755 21-33 Entity denotes macrophages,
T749 34-37 Protein denotes Akt
T747 84-88 Protein denotes TNFα
R436 T747 T759 themeOf TNFα,necroptosis-associated TNFα production

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T674 157-164 VB denotes provide
T673 149-156 NNS denotes results
T672 145-148 PRP$ denotes our
T671 143-144 , denotes ,
T670 136-143 RB denotes Overall
T669 134-135 . denotes .
T668 129-134 NN denotes death
T667 124-128 NN denotes cell
T666 121-123 TO denotes to
T665 108-120 VBG denotes contributing
T664 100-107 IN denotes without
T663 89-99 NN denotes production
T662 84-88 JJ denotes TNFα
T661 61-83 JJ denotes necroptosis-associated
T660 56-60 IN denotes over
T659 48-55 NN denotes control
T658 38-47 VBD denotes exhibited
T657 34-37 NNP denotes Akt
T656 32-33 , denotes ,
T655 21-32 NNS denotes macrophages
T654 17-20 CC denotes and
T653 5-16 NNS denotes fibroblasts
T652 0-4 NN denotes lung
T675 165-168 JJ denotes new
R392 T652 T653 compound lung,fibroblasts
R394 T654 T653 cc and,fibroblasts
R395 T655 T653 conj macrophages,fibroblasts
R396 T656 T658 punct ",",exhibited
R397 T657 T658 nsubj Akt,exhibited
R398 T658 T658 ROOT exhibited,exhibited
R399 T659 T658 dobj control,exhibited
R400 T660 T659 prep over,control
R401 T661 T663 amod necroptosis-associated,production
R402 T662 T663 compound TNFα,production
R403 T663 T660 pobj production,over
R404 T664 T658 prep without,exhibited
R405 T665 T664 pcomp contributing,without
R406 T666 T665 prep to,contributing
R407 T667 T668 compound cell,death
R408 T668 T666 pobj death,to
R409 T669 T658 punct .,exhibited
R410 T670 T674 advmod Overall,provide
R411 T671 T674 punct ",",provide
R412 T672 T673 poss our,results
R413 T673 T674 nsubj results,provide
R414 T674 T674 ROOT provide,provide

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T484 48-55 Regulation denotes control
T483 89-99 Gene_expression denotes production
T482 84-88 Protein denotes TNFα
R224 T482 T483 themeOf TNFα,production
R225 T483 T484 themeOf production,control

test3

Id Subject Object Predicate Lexical cue
T57 89-99 Gene_expression denotes production
T56 84-88 Protein denotes TNFα
T38 84-88 Protein denotes TNFα
R14 T56 T57 themeOf TNFα,production