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PMC:3585731 / 1045-1346 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T28 109-119 Gene_expression denotes production
T20 104-108 Protein denotes TNFα
R4 T20 T28 themeOf TNFα,production

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T351 282-294 JJ denotes inflammatory
T350 278-281 CC denotes and
T349 272-277 NN denotes death
T348 267-271 NN denotes cell
T347 262-266 DT denotes both
T346 259-261 IN denotes in
T345 252-258 NN denotes kinase
T344 248-251 NN denotes Akt
T343 245-247 IN denotes of
T342 240-244 NN denotes role
T341 236-239 DT denotes the
T340 232-235 CC denotes and
T339 220-231 NN denotes necroptosis
T338 217-219 IN denotes of
T337 207-216 NN denotes mechanism
T336 203-206 DT denotes the
T335 198-202 IN denotes into
T334 189-197 NN denotes insights
T333 185-188 JJ denotes new
T332 177-184 VB denotes provide
T331 169-176 NN denotes results
T330 165-168 PRP-DOLLAR- denotes our
T329 163-164 -COMMA- denotes ,
T328 156-163 RB denotes Overall
T327 149-154 NN denotes death
T326 144-148 NN denotes cell
T325 141-143 TO denotes to
T324 128-140 VB denotes contributing
T323 120-127 IN denotes without
T322 109-119 NN denotes production
T321 104-108 NN denotes TNFα
T320 81-103 JJ denotes necroptosis-associated
T319 76-80 IN denotes over
T318 68-75 NN denotes control
T317 58-67 VB denotes exhibited
T316 54-57 NN denotes Akt
T315 52-53 -COMMA- denotes ,
T314 41-52 NN denotes macrophages
T313 37-40 CC denotes and
T312 25-36 NN denotes fibroblasts
T311 20-24 NN denotes lung
T310 14-19 NN denotes mouse
T309 11-13 IN denotes as
T308 6-10 JJ denotes such
T307 4-5 -COMMA- denotes ,
R167 T309 T308 arg1Of as,such
R168 T312 T310 arg1Of fibroblasts,mouse
R169 T312 T311 arg1Of fibroblasts,lung
R170 T312 T313 arg1Of fibroblasts,and
R171 T313 T309 arg2Of and,as
R172 T314 T313 arg2Of macrophages,and
R173 T316 T317 arg1Of Akt,exhibited
R174 T316 T324 arg1Of Akt,contributing
R176 T317 T315 arg1Of exhibited,","
R177 T317 T319 arg1Of exhibited,over
R178 T317 T323 arg1Of exhibited,without
R179 T318 T317 arg2Of control,exhibited
R180 T322 T319 arg2Of production,over
R181 T322 T320 arg1Of production,necroptosis-associated
R182 T322 T321 arg1Of production,TNFα
R183 T324 T323 arg2Of contributing,without
R184 T324 T325 arg1Of contributing,to
R185 T327 T325 arg2Of death,to
R186 T327 T326 arg1Of death,cell
R187 T331 T330 arg1Of results,our
R188 T331 T332 arg1Of results,provide
R189 T332 T328 arg1Of provide,Overall
R190 T332 T329 arg1Of provide,","
R191 T332 T346 arg1Of provide,in
R192 T334 T332 arg2Of insights,provide
R193 T334 T333 arg1Of insights,new
R194 T334 T335 arg1Of insights,into
R195 T337 T336 arg1Of mechanism,the
R196 T337 T338 arg1Of mechanism,of
R197 T337 T340 arg1Of mechanism,and
R198 T339 T338 arg2Of necroptosis,of
R199 T340 T335 arg2Of and,into
R200 T342 T340 arg2Of role,and
R201 T342 T341 arg1Of role,the
R202 T342 T343 arg1Of role,of
R203 T345 T343 arg2Of kinase,of
R204 T345 T344 arg1Of kinase,Akt
R205 T349 T348 arg1Of death,cell
R206 T349 T350 arg1Of death,and
R207 T350 T346 arg2Of and,in
R208 T350 T347 arg1Of and,both

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T97 104-108 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T404 104-108 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T400 248-251 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T399 54-57 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T393 248-251 http://www.uniprot.org/uniprot/P31751 denotes Akt
T392 54-57 http://www.uniprot.org/uniprot/P31751 denotes Akt
T385 54-57 http://www.uniprot.org/uniprot/P31749 denotes Akt
T386 248-251 http://www.uniprot.org/uniprot/P31749 denotes Akt

UBERON-AE

Id Subject Object Predicate Lexical cue
T59 20-24 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung

GO-BP

Id Subject Object Predicate Lexical cue
T123 272-277 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T122 149-154 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T120 267-277 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T119 144-154 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T114 220-231 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T113 81-92 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T106 220-231 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis
T105 81-92 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-CC

Id Subject Object Predicate Lexical cue
T140 267-271 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T139 144-148 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

simple1

Id Subject Object Predicate Lexical cue
T152 104-108 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T362 104-108 Protein denotes TNFα
T369 109-119 Gene_expression denotes production
R454 T362 T369 themeOf TNFα,production

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T450 104-108 Protein denotes TNFα
T455 109-119 Gene_expression denotes production
R472 T450 T455 themeOf TNFα,production

DLUT931

Id Subject Object Predicate Lexical cue
T427 81-103 Positive_regulation denotes necroptosis-associated
T426 109-119 Gene_expression denotes production
T419 104-108 Protein denotes TNFα
R211 T426 T427 themeOf production,necroptosis-associated
R461 T419 T426 themeOf TNFα,production

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T759 81-119 Gene_expression denotes necroptosis-associated TNFα production
T755 41-53 Entity denotes macrophages,
T754 245-258 Protein denotes of Akt kinase
T749 54-57 Protein denotes Akt
T747 104-108 Protein denotes TNFα
T727 248-251 Protein denotes Akt
R436 T747 T759 themeOf TNFα,necroptosis-associated TNFα production

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T674 177-184 VB denotes provide
T673 169-176 NNS denotes results
T672 165-168 PRP$ denotes our
T671 163-164 , denotes ,
T670 156-163 RB denotes Overall
T669 154-155 . denotes .
T668 149-154 NN denotes death
T667 144-148 NN denotes cell
T666 141-143 TO denotes to
T665 128-140 VBG denotes contributing
T664 120-127 IN denotes without
T663 109-119 NN denotes production
T662 104-108 JJ denotes TNFα
T661 81-103 JJ denotes necroptosis-associated
T660 76-80 IN denotes over
T659 68-75 NN denotes control
T658 58-67 VBD denotes exhibited
T657 54-57 NNP denotes Akt
T656 52-53 , denotes ,
T655 41-52 NNS denotes macrophages
T654 37-40 CC denotes and
T653 25-36 NNS denotes fibroblasts
T652 20-24 NN denotes lung
T651 14-19 NN denotes mouse
T650 11-13 IN denotes as
T649 6-10 JJ denotes such
T648 4-5 , denotes ,
T675 185-188 JJ denotes new
T676 189-197 NNS denotes insights
T677 198-202 IN denotes into
T678 203-206 DT denotes the
T679 207-216 NN denotes mechanism
T680 217-219 IN denotes of
T681 220-231 NN denotes necroptosis
T682 232-235 CC denotes and
T683 236-239 DT denotes the
T684 240-244 NN denotes role
T685 245-247 IN denotes of
T686 248-251 NNP denotes Akt
T687 252-258 NN denotes kinase
T688 259-261 IN denotes in
T689 262-266 DT denotes both
T690 267-271 NN denotes cell
T691 272-277 NN denotes death
T692 278-281 CC denotes and
T693 282-294 JJ denotes inflammatory
R389 T649 T650 amod such,as
R391 T651 T653 compound mouse,fibroblasts
R392 T652 T653 compound lung,fibroblasts
R393 T653 T650 pobj fibroblasts,as
R483 T684 T676 conj role,insights
R484 T685 T684 prep of,role
R485 T686 T687 compound Akt,kinase
R486 T687 T685 pobj kinase,of
R487 T688 T684 prep in,role
R488 T689 T691 det both,death
R489 T690 T691 compound cell,death
R490 T691 T688 pobj death,in
R491 T692 T691 cc and,death
R394 T654 T653 cc and,fibroblasts
R395 T655 T653 conj macrophages,fibroblasts
R396 T656 T658 punct ",",exhibited
R397 T657 T658 nsubj Akt,exhibited
R398 T658 T658 ROOT exhibited,exhibited
R399 T659 T658 dobj control,exhibited
R400 T660 T659 prep over,control
R401 T661 T663 amod necroptosis-associated,production
R402 T662 T663 compound TNFα,production
R403 T663 T660 pobj production,over
R404 T664 T658 prep without,exhibited
R405 T665 T664 pcomp contributing,without
R406 T666 T665 prep to,contributing
R407 T667 T668 compound cell,death
R408 T668 T666 pobj death,to
R409 T669 T658 punct .,exhibited
R410 T670 T674 advmod Overall,provide
R411 T671 T674 punct ",",provide
R412 T672 T673 poss our,results
R413 T673 T674 nsubj results,provide
R414 T674 T674 ROOT provide,provide
R474 T675 T676 amod new,insights
R475 T676 T674 dobj insights,provide
R476 T677 T676 prep into,insights
R477 T678 T679 det the,mechanism
R478 T679 T677 pobj mechanism,into
R479 T680 T679 prep of,mechanism
R480 T681 T680 pobj necroptosis,of
R481 T682 T676 cc and,insights
R482 T683 T684 det the,role

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T485 248-258 Protein denotes Akt kinase
T484 68-75 Regulation denotes control
T483 109-119 Gene_expression denotes production
T482 104-108 Protein denotes TNFα
R224 T482 T483 themeOf TNFα,production
R225 T483 T484 themeOf production,control

test3

Id Subject Object Predicate Lexical cue
T57 109-119 Gene_expression denotes production
T56 104-108 Protein denotes TNFα
T38 104-108 Protein denotes TNFα
R14 T56 T57 themeOf TNFα,production