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PMC:3585731 / 1007-1206 JSONTXT

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testone

Id Subject Object Predicate Lexical cue
T28 147-157 Gene_expression denotes production
T27 3-13 Gene_expression denotes production
T20 142-146 Protein denotes TNFα
T19 17-21 Protein denotes TNFα
R3 T19 T27 themeOf TNFα,production
R4 T20 T28 themeOf TNFα,production

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T327 187-192 NN denotes death
T326 182-186 NN denotes cell
T325 179-181 TO denotes to
T324 166-178 VB denotes contributing
T323 158-165 IN denotes without
T322 147-157 NN denotes production
T321 142-146 NN denotes TNFα
T320 119-141 JJ denotes necroptosis-associated
T319 114-118 IN denotes over
T318 106-113 NN denotes control
T317 96-105 VB denotes exhibited
T316 92-95 NN denotes Akt
T315 90-91 -COMMA- denotes ,
T314 79-90 NN denotes macrophages
T313 75-78 CC denotes and
T312 63-74 NN denotes fibroblasts
T311 58-62 NN denotes lung
T310 52-57 NN denotes mouse
T309 49-51 IN denotes as
T308 44-48 JJ denotes such
T307 42-43 -COMMA- denotes ,
T306 37-42 NN denotes types
T305 32-36 NN denotes cell
T304 26-31 JJ denotes other
T303 23-25 IN denotes In
T302 17-21 NN denotes TNFα
T301 14-16 IN denotes of
T300 3-13 NN denotes production
R160 T300 T301 arg1Of production,of
R161 T302 T301 arg2Of TNFα,of
R162 T306 T303 arg2Of types,In
R163 T306 T304 arg1Of types,other
R164 T306 T305 arg1Of types,cell
R165 T306 T307 arg1Of types,","
R166 T306 T309 arg1Of types,as
R167 T309 T308 arg1Of as,such
R168 T312 T310 arg1Of fibroblasts,mouse
R169 T312 T311 arg1Of fibroblasts,lung
R170 T312 T313 arg1Of fibroblasts,and
R171 T313 T309 arg2Of and,as
R172 T314 T313 arg2Of macrophages,and
R173 T316 T317 arg1Of Akt,exhibited
R174 T316 T324 arg1Of Akt,contributing
R175 T317 T303 arg1Of exhibited,In
R176 T317 T315 arg1Of exhibited,","
R177 T317 T319 arg1Of exhibited,over
R178 T317 T323 arg1Of exhibited,without
R179 T318 T317 arg2Of control,exhibited
R180 T322 T319 arg2Of production,over
R181 T322 T320 arg1Of production,necroptosis-associated
R182 T322 T321 arg1Of production,TNFα
R183 T324 T323 arg2Of contributing,without
R184 T324 T325 arg1Of contributing,to
R185 T327 T325 arg2Of death,to
R186 T327 T326 arg1Of death,cell

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T96 17-21 Protein denotes TNFα
T97 142-146 Protein denotes TNFα

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T404 142-146 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T403 17-21 http://www.uniprot.org/uniprot/P01375 denotes TNFα
T399 92-95 http://www.uniprot.org/uniprot/Q9Y243 denotes Akt
T392 92-95 http://www.uniprot.org/uniprot/P31751 denotes Akt
T385 92-95 http://www.uniprot.org/uniprot/P31749 denotes Akt

UBERON-AE

Id Subject Object Predicate Lexical cue
T59 58-62 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung

GO-BP

Id Subject Object Predicate Lexical cue
T122 187-192 http://purl.obolibrary.org/obo/GO_0016265 denotes death
T119 182-192 http://purl.obolibrary.org/obo/GO_0008219 denotes cell death
T113 119-130 http://purl.obolibrary.org/obo/GO_0097528 denotes necroptosis
T105 119-130 http://purl.obolibrary.org/obo/GO_0070266 denotes necroptosis

GO-CC

Id Subject Object Predicate Lexical cue
T139 182-186 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T138 32-36 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T68 23-193 Sentence denotes In other cell types, such as mouse lung fibroblasts and macrophages, Akt exhibited control over necroptosis-associated TNFα production without contributing to cell death.
T11 23-193 Sentence denotes In other cell types, such as mouse lung fibroblasts and macrophages, Akt exhibited control over necroptosis-associated TNFα production without contributing to cell death.

simple1

Id Subject Object Predicate Lexical cue
T151 17-21 Protein denotes TNFα
T152 142-146 Protein denotes TNFα

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T361 17-21 Protein denotes TNFα
T362 142-146 Protein denotes TNFα
T369 147-157 Gene_expression denotes production
R454 T362 T369 themeOf TNFα,production

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T449 17-21 Protein denotes TNFα
T450 142-146 Protein denotes TNFα
T455 147-157 Gene_expression denotes production
R472 T450 T455 themeOf TNFα,production

DLUT931

Id Subject Object Predicate Lexical cue
T427 119-141 Positive_regulation denotes necroptosis-associated
T426 147-157 Gene_expression denotes production
T418 17-21 Protein denotes TNFα
T419 142-146 Protein denotes TNFα
R211 T426 T427 themeOf production,necroptosis-associated
R461 T419 T426 themeOf TNFα,production

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T759 119-157 Gene_expression denotes necroptosis-associated TNFα production
T756 14-21 Protein denotes of TNFα
T755 79-91 Entity denotes macrophages,
T749 92-95 Protein denotes Akt
T747 142-146 Protein denotes TNFα
T739 26-74 Entity denotes other cell types, such as mouse lung fibroblasts
T731 26-51 Entity denotes other cell types, such as
R436 T747 T759 themeOf TNFα,necroptosis-associated TNFα production

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T669 192-193 . denotes .
T668 187-192 NN denotes death
T667 182-186 NN denotes cell
T666 179-181 TO denotes to
T665 166-178 VBG denotes contributing
T664 158-165 IN denotes without
T663 147-157 NN denotes production
T662 142-146 JJ denotes TNFα
T661 119-141 JJ denotes necroptosis-associated
T660 114-118 IN denotes over
T659 106-113 NN denotes control
T658 96-105 VBD denotes exhibited
T657 92-95 NNP denotes Akt
T656 90-91 , denotes ,
T655 79-90 NNS denotes macrophages
T654 75-78 CC denotes and
T653 63-74 NNS denotes fibroblasts
T652 58-62 NN denotes lung
T651 52-57 NN denotes mouse
T650 49-51 IN denotes as
T649 44-48 JJ denotes such
T648 42-43 , denotes ,
T647 37-42 NNS denotes types
T646 32-36 NN denotes cell
T645 26-31 JJ denotes other
T644 23-25 IN denotes In
T643 21-22 . denotes .
T642 17-21 NNP denotes TNFα
T641 14-16 IN denotes of
T640 3-13 NN denotes production
R381 T641 T640 prep of,production
R382 T642 T641 pobj TNFα,of
R384 T644 T658 prep In,exhibited
R385 T645 T647 amod other,types
R386 T646 T647 compound cell,types
R387 T647 T644 pobj types,In
R388 T648 T647 punct ",",types
R389 T649 T650 amod such,as
R390 T650 T647 prep as,types
R391 T651 T653 compound mouse,fibroblasts
R392 T652 T653 compound lung,fibroblasts
R393 T653 T650 pobj fibroblasts,as
R394 T654 T653 cc and,fibroblasts
R395 T655 T653 conj macrophages,fibroblasts
R396 T656 T658 punct ",",exhibited
R397 T657 T658 nsubj Akt,exhibited
R398 T658 T658 ROOT exhibited,exhibited
R399 T659 T658 dobj control,exhibited
R400 T660 T659 prep over,control
R401 T661 T663 amod necroptosis-associated,production
R402 T662 T663 compound TNFα,production
R403 T663 T660 pobj production,over
R404 T664 T658 prep without,exhibited
R405 T665 T664 pcomp contributing,without
R406 T666 T665 prep to,contributing
R407 T667 T668 compound cell,death
R408 T668 T666 pobj death,to
R409 T669 T658 punct .,exhibited

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T484 106-113 Regulation denotes control
T483 147-157 Gene_expression denotes production
T482 142-146 Protein denotes TNFα
T479 17-21 Protein denotes TNFα
R224 T482 T483 themeOf TNFα,production
R225 T483 T484 themeOf production,control

test3

Id Subject Object Predicate Lexical cue
T57 147-157 Gene_expression denotes production
T56 142-146 Protein denotes TNFα
T55 17-21 Protein denotes TNFα
T54 3-13 Gene_expression denotes production
T38 142-146 Protein denotes TNFα
T37 17-21 Protein denotes TNFα
R13 T55 T54 themeOf TNFα,production
R14 T56 T57 themeOf TNFα,production