PMC:3558958 / 11782-12423 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/3558958","sourcedb":"PMC","sourceid":"3558958","source_url":"http://www.ncbi.nlm.nih.gov/pmc/3558958","text":"Genome annotation\nGenes were identified using Prodigal [48] as part of the Oak Ridge National Laboratory genome annotation pipeline, followed by a round of manual curation using the JGI GenePRIMP pipeline [49]. The predicted CDSs were translated and used to search the National Center for Biotechnology Information (NCBI) nonredundant database, UniProt, TIGRFam, Pfam, PRIAM, KEGG, COG, and InterPro databases. These data sources were combined to assert a product description for each predicted protein. Non-coding genes and miscellaneous features were predicted using tRNAscan-SE [49], RNAMMer [50], Rfam [51], TMHMM [52], and signalP [52].","divisions":[{"label":"Title","span":{"begin":0,"end":17}}],"tracks":[{"project":"2_test","denotations":[{"id":"23408395-20211023-140423122","span":{"begin":56,"end":58},"obj":"20211023"},{"id":"23408395-9023104-140428071","span":{"begin":206,"end":208},"obj":"9023104"},{"id":"23408395-9023104-140428072","span":{"begin":582,"end":584},"obj":"9023104"},{"id":"23408395-17452365-140428073","span":{"begin":596,"end":598},"obj":"17452365"},{"id":"23408395-12520045-140428074","span":{"begin":607,"end":609},"obj":"12520045"},{"id":"23408395-11152613-140428075","span":{"begin":619,"end":621},"obj":"11152613"},{"id":"23408395-11152613-140428076","span":{"begin":637,"end":639},"obj":"11152613"}],"attributes":[{"subj":"23408395-20211023-140423122","pred":"source","obj":"2_test"},{"subj":"23408395-9023104-140428071","pred":"source","obj":"2_test"},{"subj":"23408395-9023104-140428072","pred":"source","obj":"2_test"},{"subj":"23408395-17452365-140428073","pred":"source","obj":"2_test"},{"subj":"23408395-12520045-140428074","pred":"source","obj":"2_test"},{"subj":"23408395-11152613-140428075","pred":"source","obj":"2_test"},{"subj":"23408395-11152613-140428076","pred":"source","obj":"2_test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"2_test","color":"#ecb693","default":true}]}]}}