PMC:3475482 / 7507-7942 JSONTXT

{"project":"BLAH6-GNI-CORPUS","denotations":[{"id":"T177","span":{"begin":345,"end":347},"obj":"protein"},{"id":"T178","span":{"begin":335,"end":337},"obj":"protein"},{"id":"T179","span":{"begin":325,"end":327},"obj":"protein"},{"id":"T180","span":{"begin":315,"end":317},"obj":"protein"},{"id":"T181","span":{"begin":302,"end":304},"obj":"protein"},{"id":"T182","span":{"begin":216,"end":231},"obj":"protein"},{"id":"T183","span":{"begin":181,"end":183},"obj":"protein"},{"id":"T184","span":{"begin":100,"end":112},"obj":"DNA"},{"id":"T185","span":{"begin":68,"end":70},"obj":"DNA"},{"id":"T186","span":{"begin":59,"end":61},"obj":"DNA"}],"text":"Definition 4 (Pattern probability)\nGiven a pattern P = P1, P2, ..., Pq (Pi is a DNA alphabet) and a DNA sequence database D, the pattern probability of P in D is defined as , where Pr(Pi, D) = # of occurrences of an alphabet Pi/|D|.\nFor example, the pattern probability of pattern \"ATCG\" in Table 1 is Pr(ATCG,D) = Pr(A,D) × Pr(T,D) × Pr(C,D) × Pr(G,D) = (10/55) × (18/55) × (12/55) × (15/55) = 0.182 × 0.372 × 0.218 × 0.273 = 0.00403."}

{"project":"BLAH6-GNI-CORPUS2","denotations":[{"id":"T73","span":{"begin":356,"end":358},"obj":"protein"},{"id":"T74","span":{"begin":345,"end":347},"obj":"protein"},{"id":"T75","span":{"begin":338,"end":339},"obj":"protein"},{"id":"T76","span":{"begin":335,"end":337},"obj":"protein"},{"id":"T77","span":{"begin":325,"end":327},"obj":"protein"},{"id":"T78","span":{"begin":315,"end":317},"obj":"protein"},{"id":"T79","span":{"begin":305,"end":309},"obj":"protein"},{"id":"T80","span":{"begin":302,"end":304},"obj":"protein"},{"id":"T81","span":{"begin":291,"end":298},"obj":"protein"},{"id":"T82","span":{"begin":282,"end":286},"obj":"protein"},{"id":"T83","span":{"begin":216,"end":230},"obj":"protein"},{"id":"T84","span":{"begin":184,"end":186},"obj":"DNA"},{"id":"T85","span":{"begin":184,"end":186},"obj":"protein"},{"id":"T86","span":{"begin":181,"end":183},"obj":"protein"},{"id":"T87","span":{"begin":100,"end":112},"obj":"DNA"},{"id":"T88","span":{"begin":80,"end":83},"obj":"DNA"},{"id":"T89","span":{"begin":72,"end":74},"obj":"DNA"},{"id":"T90","span":{"begin":72,"end":74},"obj":"protein"},{"id":"T91","span":{"begin":68,"end":70},"obj":"DNA"},{"id":"T92","span":{"begin":59,"end":61},"obj":"DNA"},{"id":"T93","span":{"begin":55,"end":57},"obj":"DNA"},{"id":"T94","span":{"begin":55,"end":61},"obj":"protein"}],"text":"Definition 4 (Pattern probability)\nGiven a pattern P = P1, P2, ..., Pq (Pi is a DNA alphabet) and a DNA sequence database D, the pattern probability of P in D is defined as , where Pr(Pi, D) = # of occurrences of an alphabet Pi/|D|.\nFor example, the pattern probability of pattern \"ATCG\" in Table 1 is Pr(ATCG,D) = Pr(A,D) × Pr(T,D) × Pr(C,D) × Pr(G,D) = (10/55) × (18/55) × (12/55) × (15/55) = 0.182 × 0.372 × 0.218 × 0.273 = 0.00403."}