> top > docs > PMC:340383 > spans > 5869-11070 > annotations

PMC:340383 / 5869-11070 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-sa-dev

Id Subject Object Predicate Lexical cue
T6310 4624-4625 . denotes .
T6309 4619-4624 NN denotes model
T6308 4615-4618 DT denotes the
T6307 4607-4614 IN denotes through
T6306 4592-4600 JJ denotes possible
T6305 4601-4606 NNS denotes paths
T6304 4588-4591 DT denotes all
T6303 4583-4587 IN denotes over
T6302 4576-4582 VBD denotes summed
T6301 4568-4575 RB denotes outside
T6300 4565-4567 CC denotes or
T6299 4563-4565 , denotes ,
T6298 4557-4563 RB denotes inside
T6297 4555-4557 , denotes ,
T6296 4550-4555 NN denotes helix
T6295 4547-4549 IN denotes in
T6294 4534-4541 NN denotes residue
T6293 4532-4533 DT denotes a
T6292 4542-4546 VBZ denotes sits
T6291 4527-4531 IN denotes that
T6290 4509-4514 JJ denotes total
T6289 4515-4526 NN denotes probability
T6288 4505-4508 DT denotes the
T6287 4493-4504 VBG denotes calculating
T6286 4490-4492 IN denotes by
T6285 4478-4480 VBZ denotes is
T6284 4481-4489 VBN denotes obtained
T6283 4473-4477 NN denotes plot
T6282 4469-4472 DT denotes The
T6281 4468-4625 sentence denotes The plot is obtained by calculating the total probability that a residue sits in helix, inside, or outside summed over all possible paths through the model.
T6280 4467-4468 . denotes .
T6279 4459-4461 VBZ denotes is
T6278 4442-4443 HYPH denotes -
T6277 4443-4447 JJS denotes best
T6276 4441-4442 NN denotes N
T6275 4448-4458 NN denotes prediction
T6274 4437-4440 DT denotes the
T6273 4435-4436 -RRB- denotes )
T6272 4432-4435 CD denotes 1.2
T6271 4428-4431 CC denotes and
T6270 4426-4427 CD denotes 1
T6269 4418-4425 IN denotes between
T6268 4417-4418 -LRB- denotes (
T6267 4412-4416 NN denotes plot
T6266 4408-4411 DT denotes the
T6265 4405-4407 IN denotes of
T6264 4401-4404 NN denotes top
T6263 4397-4400 DT denotes the
T6262 4462-4467 VBN denotes shown
T6261 4394-4396 IN denotes At
T6260 4393-4468 sentence denotes At the top of the plot (between 1 and 1.2) the N-best prediction is shown.
T6259 4392-4393 . denotes .
T6258 4387-4392 NN denotes helix
T6257 4383-4384 HYPH denotes /
T6256 4376-4383 JJ denotes outside
T6255 4375-4376 HYPH denotes /
T6254 4384-4386 NN denotes TM
T6253 4368-4374 JJ denotes inside
T6252 4365-4367 IN denotes of
T6251 4341-4350 JJ denotes posterior
T6250 4351-4364 NNS denotes probabilities
T6249 4337-4340 DT denotes the
T6106 2995-2996 -LRB- denotes (
T6105 3006-3008 VBZ denotes is
T6104 2990-2994 NN denotes CaeE
T6103 2989-3063 sentence denotes CaeE (AAK77203) is a hypothetical protein from the Caenohabditis elegans.
T6102 2988-2989 . denotes .
T6101 2987-2988 -RRB- denotes )
T6100 2979-2987 NN denotes EAA01004
T6099 2978-2979 -LRB- denotes (
T6098 2965-2972 NNP denotes gambiae
T6097 2955-2964 NNP denotes anopheles
T6096 2973-2977 NN denotes str.
T6095 2951-2954 DT denotes the
T6094 2946-2950 IN denotes from
T6093 2938-2945 NN denotes protein
T6092 2936-2937 DT denotes a
T6091 2925-2935 VBZ denotes represents
T6090 2920-2924 NN denotes AnoG
T6089 2919-2989 sentence denotes AnoG represents a protein from the anopheles gambiae str. (EAA01004).
T6088 2918-2919 . denotes .
T6087 2917-2918 -RRB- denotes )
T6086 2903-2909 NNP denotes Genome
T6085 2892-2902 NNP denotes Drosophila
T6084 2910-2917 NNP denotes Project
T6083 2883-2891 NNP denotes Berkeley
T6082 2882-2883 -LRB- denotes (
T6081 2877-2881 NN denotes BDGP
T6080 2874-2876 IN denotes in
T6079 2866-2873 NN denotes CG40084
T6078 2858-2862 NN denotes gene
T6077 2853-2857 DT denotes this
T6076 2849-2852 IN denotes for
T6075 2863-2865 VBZ denotes is
T6074 2832-2841 NN denotes accession
T6073 2842-2848 NN denotes number
T6072 2828-2831 DT denotes The
T6071 2827-2919 sentence denotes The accession number for this gene is CG40084 in BDGP (Berkeley Drosophila Genome Project).
T6070 2826-2827 . denotes .
T6069 2814-2826 NNP denotes melanogaster
T6068 2811-2813 NNP denotes D.
T6067 2806-2810 IN denotes from
T6066 2793-2797 NN denotes gene
T6065 2798-2805 NN denotes product
T6064 2791-2792 DT denotes a
T6063 2788-2790 VBZ denotes is
T6062 2783-2787 NN denotes DroM
T6061 2782-2827 sentence denotes DroM is a gene product from D. melanogaster.
T6060 2781-2782 . denotes .
T6059 2775-2781 NNP denotes crassa
T6058 2764-2774 NNP denotes Neurospora
T6057 2759-2763 IN denotes from
T6056 2738-2750 JJ denotes hypothetical
T6055 2751-2758 NN denotes protein
T6054 2736-2737 DT denotes a
T6053 2731-2732 -RRB- denotes )
T6052 2723-2731 NN denotes EAA31204
T6051 2722-2723 -LRB- denotes (
T6050 2733-2735 VBZ denotes is
T6049 2717-2721 NN denotes NeuC
T6048 2716-2782 sentence denotes NeuC (EAA31204) is a hypothetical protein from Neurospora crassa.
T6047 2715-2716 . denotes .
T6046 2714-2715 -RRB- denotes )
T6045 2706-2714 NN denotes AAF33142
T6044 2705-2706 -LRB- denotes (
T6043 2696-2704 NNP denotes glabrata
T6042 2688-2695 NNP denotes Candida
T6041 2683-2687 IN denotes from
T6040 2675-2682 NN denotes protein
T6039 2673-2674 DT denotes a
T6038 2670-2672 VBZ denotes is
T6037 2665-2669 NN denotes CanG
T6036 2664-2716 sentence denotes CanG is a protein from Candida glabrata (AAF33142).
T6035 2663-2664 . denotes .
T6034 2662-2663 -RRB- denotes )
T6033 2653-2662 NN denotes NP_014581
T6032 2652-2653 -LRB- denotes (
T6031 2641-2651 NNP denotes cerevisiae
T6030 2627-2640 NNP denotes Saccharomyces
T6029 2622-2626 IN denotes from
T6028 2614-2621 NN denotes protein
T6027 2612-2613 DT denotes a
T6026 2609-2611 VBZ denotes is
T6025 2603-2608 NN denotes Amip3
T6024 2602-2664 sentence denotes Amip3 is a protein from Saccharomyces cerevisiae (NP_014581).
T6023 2601-2602 . denotes .
T6022 2594-2601 NNS denotes species
T6021 2586-2593 JJ denotes various
T6020 2583-2585 IN denotes in
T6019 2576-2582 NN denotes domain
T6018 2572-2575 NN denotes ACD
T6017 2569-2571 IN denotes of
T6016 2556-2568 NN denotes conservation
T6015 2552-2555 DT denotes the
T6014 2544-2551 VBG denotes showing
T6013 2525-2533 NN denotes sequence
T6012 2534-2543 NN denotes alignment
T6011 2520-2524 NN denotes acid
T6010 2514-2519 NN denotes Amino
T5926 2502-2503 . denotes .
T5925 2493-2502 NN denotes alignment
T5924 2489-2492 DT denotes the
T5923 2485-2488 IN denotes for
T5922 2480-2484 NNS denotes gaps
T5921 2470-2479 VBP denotes represent
T5920 2464-2469 NNS denotes lines
T5919 2460-2463 NN denotes Dot
T5918 2459-2503 sentence denotes Dot lines represent gaps for the alignment.
T5917 2458-2459 . denotes .
T5916 2454-2458 JJ denotes grey
T5915 2442-2446 VBD denotes were
T5914 2433-2441 NN denotes proteins
T5913 2429-2432 DT denotes the
T5912 2426-2428 IN denotes of
T5911 2421-2425 JJS denotes most
T5910 2418-2420 IN denotes in
T5909 2407-2417 NNS denotes homologies
T5908 2400-2406 JJ denotes strong
T5907 2395-2399 RB denotes very
T5906 2390-2394 IN denotes with
T5905 2384-2389 NNS denotes acids
T5904 2378-2383 NN denotes amino
T5903 2375-2377 CC denotes or
T5902 2447-2453 VBN denotes shaded
T5901 2363-2368 NN denotes amino
T5900 2369-2374 NNS denotes acids
T5899 2353-2362 JJ denotes Identical
T5898 2352-2459 sentence denotes Identical amino acids or amino acids with very strong homologies in most of the proteins were shaded grey.
T5897 2351-2352 . denotes .
T5896 2346-2351 JJ denotes black
T5895 2334-2338 VBD denotes were
T5894 2325-2333 NN denotes proteins
T5893 2321-2324 DT denotes all
T5892 2315-2320 IN denotes among
T5891 2304-2314 NNS denotes homologies
T5873 2226-2227 -RRB- denotes )
T5872 2221-2226 NN denotes Acdp3
T5871 2220-2221 -LRB- denotes (
T5870 2211-2219 NN denotes AF216964
T5869 2209-2211 , denotes ,
T5868 2208-2209 -RRB- denotes )
T5867 2203-2208 NN denotes Acdp2
T5866 2202-2203 -LRB- denotes (
T5865 2193-2201 NN denotes AF216961
T5864 2191-2193 , denotes ,
T5863 2190-2191 -RRB- denotes )
T5862 2185-2190 NN denotes Acdp1
T5861 2184-2185 -LRB- denotes (
T5860 2168-2174 NN denotes number
T5859 2175-2183 NN denotes AF202994
T5858 2158-2167 NN denotes accession
T5857 2152-2157 IN denotes under
T5856 2144-2151 NNP denotes GenBank
T5855 2141-2143 IN denotes in
T5854 2126-2130 VBN denotes been
T5853 2121-2125 VBP denotes have
T5852 2110-2114 NN denotes Acdp
T5851 2115-2120 NNS denotes genes
T5850 2106-2109 DT denotes the
T5849 2102-2105 IN denotes for
T5848 2131-2140 VBN denotes deposited
T5847 2088-2096 NN denotes sequence
T5846 2097-2101 NNS denotes data
T5845 2084-2087 DT denotes The
T5844 2083-2249 sentence denotes The sequence data for the Acdp genes have been deposited in GenBank under accession number AF202994 (Acdp1), AF216961 (Acdp2), AF216964 (Acdp3) and AF216963 (Acdp4).
T5843 2082-2083 . denotes .
T5842 2072-2075 NN denotes ACD
T5841 2076-2082 NN denotes domain
T5840 2068-2071 DT denotes the
T5839 2061-2067 IN denotes within
T5838 2050-2054 NN denotes Acdp
T5837 2046-2049 CC denotes and
T5836 2041-2045 NN denotes ACDP
T5835 2055-2060 NNS denotes genes
T5834 2037-2040 DT denotes the
T5833 2034-2036 IN denotes of
T5832 2030-2033 DT denotes all
T5831 2026-2029 IN denotes for
T5830 2007-2015 NN denotes homology
T5829 2016-2025 NN denotes alignment
T5828 1998-2006 NN denotes sequence
T5827 1993-1997 NN denotes acid
T5826 1987-1992 NN denotes Amino
T6248 4331-4336 VBZ denotes shows
T6247 4326-4330 NN denotes plot
T6246 4322-4325 DT denotes The
T6245 4321-4393 sentence denotes The plot shows the posterior probabilities of inside /outside/TM helix.
T6244 4320-4321 . denotes .
T6243 4306-4311 NN denotes TMHMM
T6242 4312-4319 NN denotes program
T6241 4302-4305 DT denotes the
T6240 4299-4301 IN denotes by
T6239 4284-4288 VBD denotes were
T6238 4289-4298 VBN denotes predicted
T6237 4276-4283 NNS denotes domains
T6236 4262-4275 NN denotes Transmembrane
T6235 4261-4321 sentence denotes Transmembrane domains were predicted by the TMHMM program .
T6234 4260-4261 . denotes .
T6233 4253-4260 NN denotes protein
T6232 4247-4252 NN denotes Acdp4
T6231 4240-4246 IN denotes within
T6230 4218-4231 NN denotes transmembrane
T6229 4232-4239 NNS denotes domains
T6228 4213-4217 CD denotes Four
T6201 3530-3531 . denotes .
T6200 3529-3530 CD denotes 3
T6199 3522-3528 NN denotes figure
T6198 3519-3521 IN denotes in
T6197 3509-3518 VBN denotes presented
T6196 3506-3508 IN denotes as
T6195 3501-3505 JJ denotes same
T6194 3497-3500 DT denotes the
T6193 3485-3492 NN denotes protein
T6192 3480-3484 DT denotes each
T6191 3476-3479 IN denotes for
T6190 3493-3496 VBP denotes are
T6189 3462-3475 NNS denotes Abbreviations
T6188 3461-3531 sentence denotes Abbreviations for each protein are the same as presented in figure 3.
T6187 3460-3461 . denotes .
T6186 3442-3450 JJ denotes selected
T6185 3451-3460 NNS denotes sequences
T6184 3438-3441 DT denotes the
T6183 3434-3437 IN denotes for
T6182 3423-3427 JJS denotes best
T6181 3428-3433 NN denotes match
T6180 3419-3422 DT denotes the
T6179 3416-3418 IN denotes of
T6178 3404-3415 NN denotes calculation
T6177 3400-3403 DT denotes the
T6176 3397-3399 IN denotes to
T6175 3387-3396 VBG denotes according
T6174 3371-3374 VBD denotes was
T6173 3375-3386 VBN denotes constructed
T6172 3353-3365 JJ denotes phylogenetic
T6171 3366-3370 NN denotes tree
T6170 3349-3352 DT denotes The
T6169 3348-3461 sentence denotes The phylogenetic tree was constructed according to the calculation of the best match for the selected sequences.
T6168 3347-3348 . denotes .
T6167 3346-3347 CD denotes 3
T6166 3342-3345 CC denotes and
T6165 3340-3341 CD denotes 2
T6164 3333-3339 NN denotes figure
T6163 3328-3332 IN denotes from
T6162 3317-3320 NN denotes ACD
T6161 3321-3327 NN denotes domain
T6160 3313-3316 DT denotes the
T6159 3302-3312 VBG denotes containing
T6158 3293-3301 NN denotes proteins
T6157 3287-3292 IN denotes among
T6156 3273-3286 NNS denotes relationships
T6155 3265-3272 VBG denotes showing
T6154 3260-3264 NN denotes tree
T6153 3247-3259 JJ denotes Phylogenetic
T6145 3235-3236 . denotes .
T6144 3234-3235 -RRB- denotes )
T6143 3223-3234 NN denotes ZP_00038107
T6142 3222-3223 -LRB- denotes (
T6141 3205-3215 NNP denotes fastidiosa
T6140 3197-3204 NNP denotes Xylella
T6139 3216-3221 NNP denotes Dixon
T6138 3193-3196 DT denotes the
T6137 3188-3192 IN denotes from
T6136 3167-3179 JJ denotes hypothetical
T6135 3180-3187 NN denotes protein
T6134 3165-3166 DT denotes a
T6133 3162-3164 VBZ denotes is
T6132 3157-3161 NN denotes XyFD
T6131 3156-3236 sentence denotes XyFD is a hypothetical protein from the Xylella fastidiosa Dixon (ZP_00038107).
T6130 3155-3156 . denotes .
T6129 3134-3144 NNP denotes Shewanella
T6128 3145-3155 NNP denotes oneidensis
T6127 3130-3133 DT denotes the
T6126 3125-3129 IN denotes from
T6125 3110-3116 NN denotes efflux
T6124 3117-3124 NN denotes protein
T6123 3103-3109 NN denotes cobalt
T6122 3099-3102 CC denotes and
T6121 3089-3098 NN denotes magnesium
T6120 3080-3088 NNS denotes bacteria
T6119 3069-3079 VBZ denotes represents
T6118 3064-3068 NN denotes CorC
T6117 3063-3156 sentence denotes CorC represents bacteria magnesium and cobalt efflux protein from the Shewanella oneidensis.
T6116 3062-3063 . denotes .
T6115 3041-3054 NNP denotes Caenohabditis
T6114 3055-3062 NNP denotes elegans
T6113 3037-3040 DT denotes the
T6112 3032-3036 IN denotes from
T6111 3011-3023 JJ denotes hypothetical
T6110 3024-3031 NN denotes protein
T6109 3009-3010 DT denotes a
T6108 3004-3005 -RRB- denotes )
T6107 2996-3004 NN denotes AAK77203
T5890 2297-2303 JJ denotes strong
T5889 2292-2296 RB denotes very
T5888 2287-2291 IN denotes with
T5887 2281-2286 NNS denotes acids
T5886 2275-2280 NN denotes amino
T5885 2272-2274 CC denotes or
T5884 2339-2345 VBN denotes shaded
T5883 2260-2265 NN denotes amino
T5882 2266-2271 NNS denotes acids
T5881 2250-2259 JJ denotes Identical
T5880 2249-2352 sentence denotes Identical amino acids or amino acids with very strong homologies among all proteins were shaded black.
T5879 2248-2249 . denotes .
T5878 2247-2248 -RRB- denotes )
T5877 2242-2247 NN denotes Acdp4
T5876 2241-2242 -LRB- denotes (
T5875 2232-2240 NN denotes AF216963
T5874 2228-2231 CC denotes and
T2645 5200-5201 . denotes .
T2644 5199-5200 -RRB- denotes )
T2643 5193-5195 : denotes :
T2642 5191-5193 CD denotes 10
T2641 5190-5191 SYM denotes –
T2640 5189-5190 CD denotes 7
T2639 5195-5199 NN denotes GGRR
T2638 5188-5189 -LRB- denotes (
T2637 5173-5182 NN denotes amidation
T2636 5183-5187 NN denotes site
T2635 5170-5172 DT denotes an
T2634 5166-5169 CC denotes and
T2633 5164-5165 -RRB- denotes )
T2632 5140-5142 : denotes :
T2631 5137-5140 CD denotes 206
T2630 5136-5137 SYM denotes –
T2629 5133-5136 CD denotes 185
T2628 5142-5164 NN denotes LVMVLLVLSGIFSGLNLGLMAL
T2627 5132-5133 -LRB- denotes (
T2626 5117-5123 NN denotes zipper
T2625 5109-5116 NN denotes leucine
T2624 5124-5131 NN denotes pattern
T2623 5107-5108 DT denotes a
T2622 5098-5106 VBZ denotes contains
T2621 5092-5097 NN denotes Acdp4
T2620 5091-5201 sentence denotes Acdp4 contains a leucine zipper pattern (185–206: LVMVLLVLSGIFSGLNLGLMAL) and an amidation site (7–10: GGRR).
T2619 5090-5091 . denotes .
T2618 5089-5090 -RRB- denotes )
T2617 5086-5089 CD denotes 299
T2616 5085-5086 SYM denotes –
T2615 5082-5085 CD denotes 201
T2614 5081-5082 -LRB- denotes (
T2613 5068-5069 HYPH denotes -
T2612 5069-5073 JJ denotes rich
T2611 5061-5068 NN denotes leucine
T2610 5055-5060 JJ denotes large
T2609 5074-5080 NN denotes region
T2608 5053-5054 DT denotes a
T2607 5049-5052 CC denotes and
T2606 5047-5048 -RRB- denotes )
T2605 5044-5047 CD denotes 261
T2604 5043-5044 SYM denotes –
T2603 5042-5043 CD denotes 2
T2602 5041-5042 -LRB- denotes (
T2601 5028-5029 HYPH denotes -
T2600 5029-5033 JJ denotes rich
T2599 5021-5028 NN denotes alanine
T2598 5015-5020 JJ denotes large
T2597 5034-5040 NN denotes region
T2596 5013-5014 DT denotes a
T2595 5003-5012 VBZ denotes possesses
T2594 4997-5002 NN denotes Acdp3
T2593 4996-5091 sentence denotes Acdp3 possesses a large alanine-rich region (2–261) and a large leucine-rich region (201–299).
T2592 4995-4996 . denotes .
T2591 4994-4995 -RRB- denotes )
T2590 4970-4972 : denotes :
T2589 4967-4970 CD denotes 222
T2588 4966-4967 SYM denotes –
T2587 4963-4966 CD denotes 201
T2586 4972-4994 NN denotes GAGGSGSASGTVGGKGGAGVAG
T2585 4962-4963 -LRB- denotes (
T2584 4949-4950 HYPH denotes -
T2583 4950-4954 JJ denotes rich
T2582 4942-4949 NN denotes glycine
T2581 4955-4961 NN denotes region
T2580 4940-4941 DT denotes a
T2579 4936-4939 VBZ denotes has
T2578 4930-4935 NN denotes Acdp2
T2577 4929-4996 sentence denotes Acdp2 has a glycine-rich region (201–222: GAGGSGSASGTVGGKGGAGVAG).
T2576 4928-4929 . denotes .
T2575 4927-4928 -RRB- denotes )
T2574 4921-4923 : denotes :
T2573 4918-4921 CD denotes 929
T2572 4917-4918 SYM denotes –
T2571 4914-4917 CD denotes 926
T2570 4912-4913 : denotes ;
T2569 4906-4908 : denotes :
T2568 4903-4906 CD denotes 920
T2567 4902-4903 SYM denotes –
T2566 4908-4912 NN denotes MGKK
T2565 4899-4902 CD denotes 917
T2564 4923-4927 NN denotes SGRK
T2563 4898-4899 -LRB- denotes (
T2562 4882-4891 NN denotes amidation
T2561 4892-4897 NNS denotes sites
T2560 4878-4881 CD denotes two
T2559 4874-4877 CC denotes and
T2558 4872-4874 , denotes ,
T2557 4871-4872 -RRB- denotes )
T2556 4817-4833 NN denotes PGPPVPAAPVPAPSLA
T2555 4815-4817 : denotes :
T2554 4812-4815 CD denotes 130
T2553 4811-4812 SYM denotes –
T2552 4809-4811 CD denotes 78
T2551 4834-4871 NN denotes PGENGTGDWAPRLVFIEEPPGAGGAAPSAVPTRPPGP
T2550 4808-4809 -LRB- denotes (
T2549 4795-4796 HYPH denotes -
T2548 4796-4800 JJ denotes rich
T2547 4788-4795 NN denotes Proline
T2546 4801-4807 NN denotes region
T2545 4786-4787 DT denotes a
T2544 4784-4786 , denotes ,
T2543 4783-4784 -RRB- denotes )
T2542 4728-4764 NN denotes LLRVRPRLYGPGGDLLPPAWLRALGALLLLALSALF
T2541 4726-4728 : denotes :
T2540 4723-4726 CD denotes 257
T2539 4722-4723 SYM denotes –
T2538 4719-4722 CD denotes 204
T2537 4765-4783 NN denotes SGLRLSLLSLDPVELRVL
T2536 4718-4719 -LRB- denotes (
T2535 4705-4706 HYPH denotes -
T2534 4706-4710 JJ denotes rich
T2533 4698-4705 NN denotes Leucine
T2532 4711-4717 NN denotes region
T2531 4696-4697 DT denotes a
T2530 4694-4696 , denotes ,
T2529 4693-4694 -RRB- denotes )
T2528 4682-4684 : denotes :
T2527 4680-4682 CD denotes 10
T2526 4679-4680 SYM denotes –
T2525 4678-4679 CD denotes 2
T2524 4684-4693 NN denotes AAAAAAAAA
T2523 4677-4678 -LRB- denotes (
T2522 4664-4665 HYPH denotes -
T2521 4665-4669 JJ denotes rich
T2520 4657-4664 NN denotes Alanine
T2519 4670-4676 NN denotes region
T2518 4654-4656 DT denotes an
T2517 4639-4644 NN denotes Acdp1
T2516 4637-4639 , denotes ,
T2422 3782-3784 IN denotes in
T2421 3769-3775 RB denotes mostly
T2420 3765-3768 VBP denotes are
T2419 3776-3781 VBN denotes found
T2418 3760-3764 WDT denotes that
T2417 3738-3751 JJ denotes intracellular
T2416 3752-3759 NNS denotes modules
T2415 3732-3737 JJ denotes small
T2414 3728-3731 VBP denotes are
T2413 3720-3727 NNS denotes domains
T2412 3716-3719 NN denotes CBS
T2411 3715-3819 sentence denotes CBS domains are small intracellular modules that are mostly found in 2 or four copies within a protein.
T2410 3714-3715 . denotes .
T2409 3700-3705 NN denotes Amip3
T2408 3694-3699 NN denotes yeast
T2407 3690-3693 CC denotes and
T2406 3706-3714 NN denotes proteins
T2405 3685-3689 NN denotes CorC
T2404 3676-3684 NNS denotes bacteria
T2403 3673-3675 IN denotes in
T2402 3663-3666 VBP denotes are
T2401 3667-3672 VBN denotes found
T2400 3658-3662 WDT denotes that
T2399 3645-3650 NN denotes DUF21
T2398 3651-3657 NN denotes domain
T2397 3643-3644 DT denotes a
T2396 3639-3642 CC denotes and
T2395 3627-3630 NN denotes CBS
T2394 3631-3638 NNS denotes domains
T2393 3623-3626 CD denotes two
T2392 3621-3623 , denotes ,
T2497 4123-4124 -LRB- denotes (
T2496 4176-4181 VBN denotes found
T2495 4107-4108 HYPH denotes -
T2494 4108-4115 VBG denotes binding
T2493 4103-4107 NN denotes cNMP
T2492 4116-4122 NN denotes domain
T2491 4101-4102 DT denotes A
T2490 4100-4202 sentence denotes A cNMP-binding domain (cyclic nucleotide-monophosphate-binding domain) was found in all Acdp members.
T2489 4099-4100 . denotes .
T2488 4087-4090 NN denotes CBS
T2487 4073-4086 JJ denotes intracellular
T2486 4091-4098 NNS denotes domains
T2485 4069-4072 CD denotes two
T2484 4066-4068 IN denotes to
T2483 4057-4065 JJ denotes adjacent
T2482 4048-4056 NN denotes proteins
T2481 4044-4047 DT denotes the
T2480 4041-4043 IN denotes of
T2479 4031-4032 HYPH denotes -
T2478 4030-4031 NN denotes N
T2477 4032-4040 NN denotes terminus
T2476 4026-4029 DT denotes the
T2475 4023-4025 IN denotes in
T2474 4012-4014 VB denotes be
T2473 4015-4022 VBN denotes located
T2472 4009-4011 TO denotes to
T2471 4003-4008 VBN denotes found
T2470 3999-4002 CC denotes and
T2469 3978-3991 JJ denotes transmembrane
T2468 3992-3998 NN denotes region
T2467 3976-3977 DT denotes a
T2466 3973-3975 VBZ denotes is
T2465 3966-3972 NN denotes domain
T2464 3961-3965 DT denotes This
T2463 3960-4100 sentence denotes This domain is a transmembrane region and found to be located in the N-terminus of the proteins adjacent to two intracellular CBS domains .
T2462 3959-3960 . denotes .
T2461 3951-3959 NN denotes function
T2460 3943-3950 JJ denotes unknown
T2459 3938-3942 IN denotes with
T2458 3923-3930 VBN denotes defined
T2457 3917-3922 RB denotes newly
T2456 3931-3937 NN denotes domain
T2455 3915-3916 DT denotes a
T2454 3910-3911 -RRB- denotes )
T2453 3897-3899 : denotes :
T2452 3895-3897 NN denotes CD
T2451 3899-3910 NN denotes pfam01959.9
T2450 3894-3895 -LRB- denotes (
T2449 3912-3914 VBZ denotes is
T2448 3888-3893 NN denotes DUF21
T2447 3887-3960 sentence denotes DUF21 (CD: pfam01959.9) is a newly defined domain with unknown function.
T2446 3886-3887 . denotes .
T2445 3885-3886 -RRB- denotes ]
T2444 3884-3885 CD denotes 8
T2443 3883-3884 -LRB- denotes [
T2442 3867-3875 JJ denotes globular
T2441 3860-3866 JJ denotes stable
T2440 3876-3882 NN denotes domain
T2439 3858-3859 DT denotes a
T2438 3853-3857 VB denotes form
T2437 3850-3852 TO denotes to
T2436 3833-3840 NNS denotes domains
T2435 3829-3832 NN denotes CBS
T2434 3826-3828 IN denotes of
T2433 3841-3849 VBP denotes dimerise
T2432 3820-3825 NNS denotes Pairs
T2431 3819-3887 sentence denotes Pairs of CBS domains dimerise to form a stable globular domain [8].
T2430 3818-3819 . denotes .
T2429 3811-3818 NN denotes protein
T2428 3809-3810 DT denotes a
T2427 3802-3808 IN denotes within
T2426 3790-3794 CD denotes four
T2425 3787-3789 CC denotes or
T2424 3795-3801 NNS denotes copies
T2423 3785-3786 CD denotes 2
T2019 0-8 NN denotes Sequence
T2020 9-17 NN denotes homology
T2021 18-21 CC denotes and
T2022 22-31 JJ denotes molecular
T2023 32-47 NNS denotes characteristics
T2024 47-169 sentence denotes The mouse Acdp genes showed very strong homologies of both nucleotide and AA sequences to the human ACDP genes (Table 1).
T2025 48-51 DT denotes The
T2026 63-68 NNS denotes genes
T2027 52-57 NN denotes mouse
T2028 58-62 NN denotes Acdp
T2029 69-75 VBD denotes showed
T2030 76-80 RB denotes very
T2031 81-87 JJ denotes strong
T2032 88-98 NNS denotes homologies
T2033 99-101 IN denotes of
T2034 102-106 CC denotes both
T2035 107-117 NN denotes nucleotide
T2036 125-134 NNS denotes sequences
T2037 118-121 CC denotes and
T2038 122-124 NN denotes AA
T2039 135-137 IN denotes to
T2040 138-141 DT denotes the
T2041 153-158 NNS denotes genes
T2042 142-147 JJ denotes human
T2043 148-152 NN denotes ACDP
T2044 159-160 -LRB- denotes (
T2045 160-165 NN denotes Table
T2046 166-167 CD denotes 1
T2047 167-168 -RRB- denotes )
T2048 168-169 . denotes .
T2049 169-330 sentence denotes The highest homologies were observed between the human ACDP2 and the mouse Acdp2 gene (91% of nucleotide identity, 97% of AA identity and 99.4% of AA homology).
T2050 170-173 DT denotes The
T2051 182-192 NNS denotes homologies
T2052 174-181 JJS denotes highest
T2053 198-206 VBN denotes observed
T2054 193-197 VBD denotes were
T2055 207-214 IN denotes between
T2056 215-218 DT denotes the
T2057 225-230 NN denotes ACDP2
T2058 219-224 JJ denotes human
T2059 231-234 CC denotes and
T2060 235-238 DT denotes the
T2061 245-250 NN denotes Acdp2
T2062 239-244 NN denotes mouse
T2063 251-255 NN denotes gene
T2064 256-257 -LRB- denotes (
T2065 259-260 NN denotes %
T2066 257-259 CD denotes 91
T2067 261-263 IN denotes of
T2068 264-274 NN denotes nucleotide
T2069 275-283 NN denotes identity
T2070 283-285 , denotes ,
T2071 285-287 CD denotes 97
T2072 287-288 NN denotes %
T2073 289-291 IN denotes of
T2074 292-294 NN denotes AA
T2075 295-303 NN denotes identity
T2076 304-307 CC denotes and
T2077 308-312 CD denotes 99.4
T2078 312-313 NN denotes %
T2079 314-316 IN denotes of
T2080 317-319 NN denotes AA
T2081 320-328 NN denotes homology
T2082 328-329 -RRB- denotes )
T2083 329-330 . denotes .
T2084 330-551 sentence denotes In addition, the 5' UTR nucleotide sequences (20 bp of nucleotides before start codon) also showed high homologies to the human homologs, for example, the Acdp2 5' UTR sequence showed 95% identities to its human homolog.
T2085 331-333 IN denotes In
T2086 423-429 VBD denotes showed
T2087 334-342 NN denotes addition
T2088 342-344 , denotes ,
T2089 344-347 DT denotes the
T2090 366-375 NNS denotes sequences
T2091 348-349 CD denotes 5
T2092 351-354 NN denotes UTR
T2093 349-350 SYM denotes '
T2094 355-365 NN denotes nucleotide
T2095 376-377 -LRB- denotes (
T2096 380-382 NNS denotes bp
T2097 377-379 CD denotes 20
T2098 383-385 IN denotes of
T2099 386-397 NNS denotes nucleotides
T2100 398-404 IN denotes before
T2101 405-410 NN denotes start
T2102 411-416 NN denotes codon
T2103 416-417 -RRB- denotes )
T2104 418-422 RB denotes also
T2105 508-514 VBD denotes showed
T2106 430-434 JJ denotes high
T2107 435-445 NNS denotes homologies
T2108 446-448 IN denotes to
T2109 449-452 DT denotes the
T2110 459-467 NNS denotes homologs
T2111 453-458 JJ denotes human
T2112 467-469 , denotes ,
T2113 469-472 IN denotes for
T2114 473-480 NN denotes example
T2115 480-482 , denotes ,
T2116 482-485 DT denotes the
T2117 499-507 NN denotes sequence
T2118 486-491 NN denotes Acdp2
T2119 492-493 CD denotes 5
T2120 495-498 NN denotes UTR
T2121 493-494 SYM denotes '
T2122 515-517 CD denotes 95
T2123 517-518 NN denotes %
T2124 519-529 NNS denotes identities
T2125 530-532 IN denotes to
T2126 533-536 PRP$ denotes its
T2127 543-550 NN denotes homolog
T2128 537-542 JJ denotes human
T2129 550-551 . denotes .
T2130 551-733 sentence denotes However, the homologies in the 3' UTR sequences (20 bp of nucleotides after stop codon) were much lower (40–55%) for all Acdp genes except Acdp4 (90% identity to its human homolog).
T2131 552-559 RB denotes However
T2132 640-644 VBD denotes were
T2133 559-561 , denotes ,
T2134 561-564 DT denotes the
T2135 565-575 NNS denotes homologies
T2136 576-578 IN denotes in
T2137 579-582 DT denotes the
T2138 590-599 NNS denotes sequences
T2139 583-584 CD denotes 3
T2140 586-589 NN denotes UTR
T2141 584-585 SYM denotes '
T2142 600-601 -LRB- denotes (
T2143 604-606 NNS denotes bp
T2144 601-603 CD denotes 20
T2145 607-609 IN denotes of
T2146 610-621 NNS denotes nucleotides
T2147 622-627 IN denotes after
T2148 628-632 NN denotes stop
T2149 633-638 NN denotes codon
T2150 638-639 -RRB- denotes )
T2151 645-649 RB denotes much
T2152 650-655 JJR denotes lower
T2153 656-657 -LRB- denotes (
T2154 662-663 NN denotes %
T2155 657-659 CD denotes 40
T2156 660-662 CD denotes 55
T2157 659-660 SYM denotes –
T2158 663-664 -RRB- denotes )
T2159 665-668 IN denotes for
T2160 669-672 DT denotes all
T2161 678-683 NNS denotes genes
T2162 673-677 NN denotes Acdp
T2163 684-690 IN denotes except
T2164 691-696 NN denotes Acdp4
T2165 697-698 -LRB- denotes (
T2166 702-710 NN denotes identity
T2167 698-700 CD denotes 90
T2168 700-701 NN denotes %
T2169 711-713 IN denotes to
T2170 714-717 PRP$ denotes its
T2171 724-731 NN denotes homolog
T2172 718-723 JJ denotes human
T2173 731-732 -RRB- denotes )
T2174 732-733 . denotes .
T2175 733-867 sentence denotes The ancient conserved domain (ACD) has 55.3% of AA identity and 83.3% of homology between all mouse and human ACDP proteins (Fig. 2).
T2176 734-737 DT denotes The
T2177 756-762 NN denotes domain
T2178 738-745 JJ denotes ancient
T2179 746-755 VBN denotes conserved
T2180 769-772 VBZ denotes has
T2181 763-764 -LRB- denotes (
T2182 764-767 NN denotes ACD
T2183 767-768 -RRB- denotes )
T2184 773-777 CD denotes 55.3
T2185 777-778 NN denotes %
T2186 779-781 IN denotes of
T2187 782-784 NN denotes AA
T2188 785-793 NN denotes identity
T2189 794-797 CC denotes and
T2190 798-802 CD denotes 83.3
T2191 802-803 NN denotes %
T2192 804-806 IN denotes of
T2193 807-815 NN denotes homology
T2194 816-823 IN denotes between
T2195 824-827 DT denotes all
T2196 849-857 NN denotes proteins
T2197 828-833 NN denotes mouse
T2198 834-837 CC denotes and
T2199 838-843 JJ denotes human
T2200 844-848 NN denotes ACDP
T2201 858-859 -LRB- denotes (
T2202 859-863 NN denotes Fig.
T2203 864-865 CD denotes 2
T2204 865-866 -RRB- denotes )
T2205 866-867 . denotes .
T2206 867-1015 sentence denotes The ACD domain is evolutionarily conserved in divergent species ranging from bacteria, yeast, C. elegans, D. melanogaster, mouse to human (Fig. 3).
T2207 868-871 DT denotes The
T2208 876-882 NN denotes domain
T2209 872-875 NN denotes ACD
T2210 901-910 VBN denotes conserved
T2211 883-885 VBZ denotes is
T2212 886-900 RB denotes evolutionarily
T2213 911-913 IN denotes in
T2214 914-923 JJ denotes divergent
T2215 924-931 NNS denotes species
T2216 932-939 VBG denotes ranging
T2217 940-944 IN denotes from
T2218 945-953 NNS denotes bacteria
T2219 953-955 , denotes ,
T2220 955-960 NN denotes yeast
T2221 960-962 , denotes ,
T2222 962-964 NNP denotes C.
T2223 965-972 NNP denotes elegans
T2224 972-974 , denotes ,
T2225 974-976 NNP denotes D.
T2226 977-989 NNP denotes melanogaster
T2227 989-991 , denotes ,
T2228 991-996 NN denotes mouse
T2229 997-999 IN denotes to
T2230 1000-1005 JJ denotes human
T2231 1006-1007 -LRB- denotes (
T2232 1007-1011 NN denotes Fig.
T2233 1012-1013 CD denotes 3
T2234 1013-1014 -RRB- denotes )
T2235 1014-1015 . denotes .
T2236 1015-1210 sentence denotes Particularly, as shown in Fig. 3, Acdp proteins showed very strong AA homology to bacteria CorC protein (35% AA identity with 55% homology), which is involved in magnesium and cobalt efflux [7].
T2237 1016-1028 RB denotes Particularly
T2238 1064-1070 VBD denotes showed
T2239 1028-1030 , denotes ,
T2240 1030-1032 IN denotes as
T2241 1033-1038 VBN denotes shown
T2242 1039-1041 IN denotes in
T2243 1042-1046 NN denotes Fig.
T2244 1047-1048 CD denotes 3
T2245 1048-1050 , denotes ,
T2246 1050-1054 NN denotes Acdp
T2247 1055-1063 NN denotes proteins
T2248 1071-1075 RB denotes very
T2249 1076-1082 JJ denotes strong
T2250 1086-1094 NN denotes homology
T2251 1083-1085 NN denotes AA
T2252 1095-1097 IN denotes to
T2253 1098-1106 NNS denotes bacteria
T2254 1112-1119 NN denotes protein
T2255 1107-1111 NN denotes CorC
T2256 1120-1121 -LRB- denotes (
T2257 1128-1136 NN denotes identity
T2258 1121-1123 CD denotes 35
T2259 1123-1124 NN denotes %
T2260 1125-1127 NN denotes AA
T2261 1137-1141 IN denotes with
T2262 1142-1144 CD denotes 55
T2263 1144-1145 NN denotes %
T2264 1146-1154 NN denotes homology
T2265 1154-1155 -RRB- denotes )
T2266 1155-1157 , denotes ,
T2267 1157-1162 WDT denotes which
T2268 1166-1174 VBN denotes involved
T2269 1163-1165 VBZ denotes is
T2270 1175-1177 IN denotes in
T2271 1178-1187 NN denotes magnesium
T2272 1199-1205 NN denotes efflux
T2273 1188-1191 CC denotes and
T2274 1192-1198 NN denotes cobalt
T2275 1206-1207 -LRB- denotes [
T2276 1207-1208 CD denotes 7
T2277 1208-1209 -RRB- denotes ]
T2278 1209-1210 . denotes .
T2279 1210-1336 sentence denotes High AA homology was also observed between the Acdp proteins and the yeast Amip3 protein (35% AA identity with 56% homology).
T2280 1211-1215 JJ denotes High
T2281 1219-1227 NN denotes homology
T2282 1216-1218 NN denotes AA
T2283 1237-1245 VBN denotes observed
T2284 1228-1231 VBD denotes was
T2285 1232-1236 RB denotes also
T2303 1324-1325 NN denotes %
T2304 1334-1335 -RRB- denotes )
T2305 1335-1336 . denotes .
T2306 1336-1405 sentence denotes The Amip3 is likely to be a homologous to the bacteria CorC protein.
T2307 1337-1340 DT denotes The
T2308 1341-1346 NN denotes Amip3
T2309 1347-1349 VBZ denotes is
T2310 1350-1356 JJ denotes likely
T2311 1357-1359 TO denotes to
T2312 1360-1362 VB denotes be
T2313 1363-1364 DT denotes a
T2314 1365-1375 JJ denotes homologous
T2315 1376-1378 IN denotes to
T2316 1379-1382 DT denotes the
T2317 1397-1404 NN denotes protein
T2318 1383-1391 NNS denotes bacteria
T2319 1392-1396 NN denotes CorC
T2320 1404-1405 . denotes .
T2321 1405-1557 sentence denotes The Amip3 mutants confer resistance to copper toxicity (Personal communication with Dr. V.C. Culotte, John Hopkins Bloomberg, School of Public Health).
T2322 1406-1409 DT denotes The
T2323 1416-1423 NNS denotes mutants
T2324 1410-1415 NN denotes Amip3
T2325 1424-1430 VBP denotes confer
T2326 1431-1441 NN denotes resistance
T2327 1442-1444 IN denotes to
T2328 1445-1451 NN denotes copper
T2329 1452-1460 NN denotes toxicity
T2330 1461-1462 -LRB- denotes (
T2331 1490-1493 NNP denotes Dr.
T2332 1462-1470 JJ denotes Personal
T2333 1471-1484 NN denotes communication
T2334 1485-1489 IN denotes with
T2335 1494-1498 NNP denotes V.C.
T2336 1499-1506 NNP denotes Culotte
T2337 1506-1508 , denotes ,
T2338 1508-1512 NNP denotes John
T2339 1513-1520 NNP denotes Hopkins
T2340 1521-1530 NNP denotes Bloomberg
T2341 1530-1532 , denotes ,
T2342 1532-1538 NNP denotes School
T2343 1539-1541 IN denotes of
T2344 1542-1548 NNP denotes Public
T2345 1549-1555 NNP denotes Health
T2346 1555-1556 -RRB- denotes )
T2347 1556-1557 . denotes .
T2348 1557-1707 sentence denotes The evolutionary relationships among those proteins are illustrated by a phylogenetic tree constructed based on the AA homology of proteins (Fig. 4).
T2349 1558-1561 DT denotes The
T2350 1575-1588 NNS denotes relationships
T2351 1562-1574 JJ denotes evolutionary
T2352 1614-1625 VBN denotes illustrated
T2353 1589-1594 IN denotes among
T2354 1595-1600 DT denotes those
T2355 1601-1609 NN denotes proteins
T2356 1610-1613 VBP denotes are
T2357 1626-1628 IN denotes by
T2358 1629-1630 DT denotes a
T2359 1644-1648 NN denotes tree
T2360 1631-1643 JJ denotes phylogenetic
T2361 1649-1660 VBN denotes constructed
T2362 1661-1666 VBN denotes based
T2363 1667-1669 IN denotes on
T2364 1670-1673 DT denotes the
T2365 1677-1685 NN denotes homology
T2366 1674-1676 NN denotes AA
T2367 1686-1688 IN denotes of
T2368 1689-1697 NN denotes proteins
T2369 1698-1699 -LRB- denotes (
T2370 1699-1703 NN denotes Fig.
T2371 1704-1705 CD denotes 4
T2372 1705-1706 -RRB- denotes )
T2373 1706-1707 . denotes .
T2374 1707-1708 sentence denotes
T6623 1717-1727 NN denotes Nucleotide
T6624 1743-1753 NNS denotes homologies
T6625 1728-1731 CC denotes and
T6626 1732-1737 NN denotes amino
T6627 1738-1742 NN denotes acid
T6628 1754-1755 -LRB- denotes (
T6629 1755-1756 NN denotes %
T6630 1756-1757 -RRB- denotes )
T6631 1758-1765 IN denotes between
T6632 1766-1771 JJ denotes human
T6633 1772-1776 NN denotes ACDP
T6634 1792-1799 NNS denotes members
T6635 1777-1780 CC denotes and
T6636 1781-1786 NN denotes mouse
T6637 1787-1791 NN denotes Acdp
T6638 1799-1800 . denotes .
T2286 1246-1253 IN denotes between
T2287 1254-1257 DT denotes the
T2288 1263-1271 NN denotes proteins
T2289 1258-1262 NN denotes Acdp
T2290 1272-1275 CC denotes and
T2291 1276-1279 DT denotes the
T2292 1292-1299 NN denotes protein
T2293 1280-1285 NN denotes yeast
T2294 1286-1291 NN denotes Amip3
T2295 1300-1301 -LRB- denotes (
T2296 1308-1316 NN denotes identity
T2297 1301-1303 CD denotes 35
T2298 1303-1304 NN denotes %
T2299 1305-1307 NN denotes AA
T2300 1317-1321 IN denotes with
T2301 1322-1324 CD denotes 56
T2302 1326-1334 NN denotes homology
T2391 3620-3621 -RRB- denotes )
T2390 3619-3620 CD denotes 5
T2389 3614-3618 NN denotes Fig.
T2388 3613-3614 -LRB- denotes (
T2387 3591-3604 NN denotes transmembrane
T2386 3582-3590 JJ denotes distinct
T2385 3605-3612 NNS denotes domains
T2384 3577-3581 CD denotes four
T2383 3556-3560 NN denotes Acdp
T2382 3550-3555 NN denotes mouse
T2381 3561-3568 NNS denotes members
T2380 3546-3549 DT denotes all
T2379 3569-3576 VBP denotes contain
T2378 3541-3545 IN denotes that
T2377 3535-3540 VBD denotes found
T2376 3532-3534 PRP denotes We
T2375 3532-3715 sentence denotes We found that all mouse Acdp members contain four distinct transmembrane domains (Fig. 5), two CBS domains and a DUF21 domain that are found in bacteria CorC and yeast Amip3 proteins.
T2515 4629-4637 NN denotes addition
T2514 4645-4653 VBZ denotes contains
T2513 4626-4628 IN denotes In
T2512 4202-4929 sentence denotes Figure 5 Four transmembrane domains within Acdp4 protein. Transmembrane domains were predicted by the TMHMM program . The plot shows the posterior probabilities of inside /outside/TM helix. At the top of the plot (between 1 and 1.2) the N-best prediction is shown. The plot is obtained by calculating the total probability that a residue sits in helix, inside, or outside summed over all possible paths through the model. In addition, Acdp1 contains an Alanine-rich region (2–10: AAAAAAAAA), a Leucine-rich region (204–257: LLRVRPRLYGPGGDLLPPAWLRALGALLLLALSALF SGLRLSLLSLDPVELRVL), a Proline-rich region (78–130: PGPPVPAAPVPAPSLA PGENGTGDWAPRLVFIEEPPGAGGAAPSAVPTRPPGP), and two amidation sites (917–920: MGKK; 926–929: SGRK).
T2511 4201-4202 . denotes .
T2510 4189-4193 NN denotes Acdp
T2509 4194-4201 NNS denotes members
T2508 4185-4188 DT denotes all
T2507 4182-4184 IN denotes in
T2506 4172-4175 VBD denotes was
T2505 4170-4171 -RRB- denotes )
T2504 4156-4163 VBG denotes binding
T2503 4155-4156 HYPH denotes -
T2502 4141-4142 HYPH denotes -
T2501 4131-4141 NN denotes nucleotide
T2500 4142-4155 NN denotes monophosphate
T2499 4124-4130 JJ denotes cyclic
T2498 4164-4170 NN denotes domain
R987 T2019 T2020 compound Sequence,homology
R988 T2021 T2020 cc and,homology
R989 T2022 T2023 amod molecular,characteristics
R990 T2023 T2020 conj characteristics,homology
R991 T2025 T2026 det The,genes
R992 T2026 T2029 nsubj genes,showed
R993 T2027 T2026 compound mouse,genes
R994 T2028 T2026 compound Acdp,genes
R995 T2030 T2031 advmod very,strong
R996 T2031 T2032 amod strong,homologies
R997 T2032 T2029 dobj homologies,showed
R998 T2033 T2032 prep of,homologies
R999 T2034 T2035 preconj both,nucleotide
R1000 T2035 T2036 nmod nucleotide,sequences
R1001 T2036 T2033 pobj sequences,of
R1002 T2037 T2035 cc and,nucleotide
R1003 T2038 T2035 conj AA,nucleotide
R1004 T2039 T2032 prep to,homologies
R1005 T2040 T2041 det the,genes
R1006 T2041 T2039 pobj genes,to
R1007 T2042 T2041 amod human,genes
R1008 T2043 T2041 compound ACDP,genes
R1009 T2044 T2045 punct (,Table
R1010 T2045 T2029 parataxis Table,showed
R1011 T2046 T2045 nummod 1,Table
R1012 T2047 T2045 punct ),Table
R1013 T2048 T2029 punct .,showed
R1014 T2050 T2051 det The,homologies
R1015 T2051 T2053 nsubjpass homologies,observed
R1016 T2052 T2051 amod highest,homologies
R1017 T2054 T2053 auxpass were,observed
R1018 T2055 T2053 prep between,observed
R1019 T2056 T2057 det the,ACDP2
R1020 T2057 T2055 pobj ACDP2,between
R1021 T2058 T2057 amod human,ACDP2
R1022 T2059 T2057 cc and,ACDP2
R1023 T2060 T2061 det the,Acdp2
R1024 T2061 T2063 compound Acdp2,gene
R1025 T2062 T2061 compound mouse,Acdp2
R1026 T2063 T2057 conj gene,ACDP2
R1027 T2064 T2065 punct (,%
R1028 T2065 T2053 parataxis %,observed
R1029 T2066 T2065 nummod 91,%
R1030 T2067 T2065 prep of,%
R1031 T2068 T2069 compound nucleotide,identity
R1032 T2069 T2067 pobj identity,of
R1033 T2070 T2065 punct ", ",%
R1034 T2071 T2072 nummod 97,%
R1035 T2072 T2065 conj %,%
R1036 T2073 T2072 prep of,%
R1037 T2074 T2075 compound AA,identity
R1038 T2075 T2073 pobj identity,of
R1039 T2076 T2072 cc and,%
R1040 T2077 T2078 nummod 99.4,%
R1041 T2078 T2072 conj %,%
R1042 T2079 T2078 prep of,%
R1043 T2080 T2081 compound AA,homology
R1044 T2081 T2079 pobj homology,of
R1045 T2082 T2065 punct ),%
R1046 T2083 T2053 punct .,observed
R1047 T2085 T2086 prep In,showed
R1048 T2086 T2105 ccomp showed,showed
R1049 T2087 T2085 pobj addition,In
R1050 T2088 T2086 punct ", ",showed
R1051 T2089 T2090 det the,sequences
R1052 T2090 T2086 nsubj sequences,showed
R1053 T2091 T2092 nummod 5,UTR
R1054 T2092 T2090 compound UTR,sequences
R1055 T2093 T2091 punct ',5
R1056 T2094 T2090 compound nucleotide,sequences
R1057 T2095 T2096 punct (,bp
R1058 T2096 T2090 parataxis bp,sequences
R1059 T2097 T2096 nummod 20,bp
R1060 T2098 T2096 prep of,bp
R1061 T2099 T2098 pobj nucleotides,of
R1062 T2100 T2096 prep before,bp
R1063 T2101 T2102 compound start,codon
R1064 T2102 T2100 pobj codon,before
R1065 T2103 T2096 punct ),bp
R1066 T2104 T2086 advmod also,showed
R1067 T2106 T2107 amod high,homologies
R1068 T2107 T2086 dobj homologies,showed
R1069 T2108 T2107 prep to,homologies
R1070 T2109 T2110 det the,homologs
R1071 T2110 T2108 pobj homologs,to
R1072 T2111 T2110 amod human,homologs
R1073 T2112 T2105 punct ", ",showed
R1074 T2113 T2105 prep for,showed
R1075 T2114 T2113 pobj example,for
R1076 T2115 T2105 punct ", ",showed
R1077 T2116 T2117 det the,sequence
R1078 T2117 T2105 nsubj sequence,showed
R1079 T2118 T2117 nmod Acdp2,sequence
R1080 T2119 T2120 nummod 5,UTR
R1081 T2120 T2117 compound UTR,sequence
R1082 T2121 T2119 punct ',5
R1083 T2122 T2123 nummod 95,%
R1084 T2123 T2124 compound %,identities
R1085 T2124 T2105 dobj identities,showed
R1086 T2125 T2105 prep to,showed
R1087 T2126 T2127 poss its,homolog
R1088 T2127 T2125 pobj homolog,to
R1089 T2128 T2127 amod human,homolog
R1090 T2129 T2105 punct .,showed
R1091 T2131 T2132 advmod However,were
R1092 T2133 T2132 punct ", ",were
R1093 T2134 T2135 det the,homologies
R1094 T2135 T2132 nsubj homologies,were
R1095 T2136 T2135 prep in,homologies
R1096 T2137 T2138 det the,sequences
R1097 T2138 T2136 pobj sequences,in
R1098 T2139 T2140 nummod 3,UTR
R1099 T2140 T2138 compound UTR,sequences
R1100 T2141 T2139 punct ',3
R1101 T2142 T2143 punct (,bp
R1102 T2143 T2135 parataxis bp,homologies
R1103 T2144 T2143 nummod 20,bp
R1104 T2145 T2143 prep of,bp
R1105 T2146 T2145 pobj nucleotides,of
R1106 T2147 T2143 prep after,bp
R1107 T2148 T2149 compound stop,codon
R1108 T2149 T2147 pobj codon,after
R1109 T2150 T2143 punct ),bp
R1110 T2151 T2152 advmod much,lower
R1111 T2152 T2132 acomp lower,were
R1112 T2153 T2154 punct (,%
R1113 T2154 T2132 parataxis %,were
R1114 T2155 T2156 quantmod 40,55
R1115 T2156 T2154 nummod 55,%
R1116 T2157 T2156 punct –,55
R1117 T2158 T2154 punct ),%
R1118 T2159 T2132 prep for,were
R1119 T2160 T2161 det all,genes
R1120 T2161 T2159 pobj genes,for
R1121 T2162 T2161 compound Acdp,genes
R1122 T2163 T2161 prep except,genes
R1123 T2164 T2163 pobj Acdp4,except
R1124 T2165 T2166 punct (,identity
R1125 T2166 T2164 parataxis identity,Acdp4
R1126 T2167 T2166 nummod 90,identity
R1127 T2168 T2167 quantmod %,90
R1128 T2169 T2166 prep to,identity
R1129 T2170 T2171 poss its,homolog
R1130 T2171 T2169 pobj homolog,to
R1131 T2172 T2171 amod human,homolog
R1132 T2173 T2166 punct ),identity
R1133 T2174 T2132 punct .,were
R1134 T2176 T2177 det The,domain
R1135 T2177 T2180 nsubj domain,has
R1136 T2178 T2177 amod ancient,domain
R1137 T2179 T2177 amod conserved,domain
R1138 T2181 T2177 punct (,domain
R1139 T2182 T2177 appos ACD,domain
R1140 T2183 T2180 punct ),has
R1141 T2184 T2185 nummod 55.3,%
R1142 T2185 T2180 dobj %,has
R1143 T2186 T2185 prep of,%
R1144 T2187 T2188 compound AA,identity
R1145 T2188 T2186 pobj identity,of
R1146 T2189 T2185 cc and,%
R1147 T2190 T2191 nummod 83.3,%
R1148 T2191 T2185 conj %,%
R1149 T2192 T2191 prep of,%
R1150 T2193 T2192 pobj homology,of
R1151 T2194 T2180 prep between,has
R1152 T2195 T2196 det all,proteins
R1153 T2196 T2194 pobj proteins,between
R1154 T2197 T2196 nmod mouse,proteins
R1155 T2198 T2197 cc and,mouse
R1156 T2199 T2197 conj human,mouse
R1157 T2200 T2196 compound ACDP,proteins
R1158 T2201 T2202 punct (,Fig.
R1159 T2202 T2180 parataxis Fig.,has
R1160 T2203 T2202 nummod 2,Fig.
R1161 T2204 T2202 punct ),Fig.
R1162 T2205 T2180 punct .,has
R1163 T2207 T2208 det The,domain
R1164 T2208 T2210 nsubjpass domain,conserved
R1165 T2209 T2208 compound ACD,domain
R1166 T2211 T2210 auxpass is,conserved
R1167 T2212 T2210 advmod evolutionarily,conserved
R1168 T2213 T2210 prep in,conserved
R1169 T2214 T2215 amod divergent,species
R1170 T2215 T2213 pobj species,in
R1171 T2216 T2215 acl ranging,species
R1172 T2217 T2216 prep from,ranging
R1173 T2218 T2217 pobj bacteria,from
R1174 T2219 T2218 punct ", ",bacteria
R1175 T2220 T2218 appos yeast,bacteria
R1176 T2221 T2218 punct ", ",bacteria
R1177 T2222 T2223 compound C.,elegans
R1178 T2223 T2218 appos elegans,bacteria
R1179 T2224 T2218 punct ", ",bacteria
R1180 T2225 T2226 compound D.,melanogaster
R1181 T2226 T2218 appos melanogaster,bacteria
R1182 T2227 T2218 punct ", ",bacteria
R1183 T2228 T2218 appos mouse,bacteria
R1184 T2229 T2217 prep to,from
R1185 T2230 T2229 pobj human,to
R1186 T2231 T2232 punct (,Fig.
R1187 T2232 T2210 parataxis Fig.,conserved
R1188 T2233 T2232 nummod 3,Fig.
R1189 T2234 T2232 punct ),Fig.
R1190 T2235 T2210 punct .,conserved
R1191 T2237 T2238 advmod Particularly,showed
R1192 T2239 T2238 punct ", ",showed
R1193 T2240 T2241 mark as,shown
R1194 T2241 T2238 advcl shown,showed
R1195 T2242 T2241 prep in,shown
R1196 T2243 T2242 pobj Fig.,in
R1197 T2244 T2243 nummod 3,Fig.
R1198 T2245 T2238 punct ", ",showed
R1199 T2246 T2247 compound Acdp,proteins
R1200 T2247 T2238 nsubj proteins,showed
R1201 T2248 T2249 advmod very,strong
R1202 T2249 T2250 amod strong,homology
R1203 T2250 T2238 dobj homology,showed
R1204 T2251 T2250 compound AA,homology
R1205 T2252 T2250 prep to,homology
R1206 T2253 T2254 compound bacteria,protein
R1207 T2254 T2252 pobj protein,to
R1208 T2255 T2254 compound CorC,protein
R1209 T2256 T2257 punct (,identity
R1210 T2257 T2254 parataxis identity,protein
R1211 T2258 T2259 nummod 35,%
R1212 T2259 T2257 compound %,identity
R1213 T2260 T2257 compound AA,identity
R1214 T2261 T2257 prep with,identity
R1215 T2262 T2263 nummod 55,%
R1216 T2263 T2264 compound %,homology
R1217 T2264 T2261 pobj homology,with
R1218 T2265 T2257 punct ),identity
R1219 T2266 T2254 punct ", ",protein
R1220 T2267 T2268 dep which,involved
R1221 T2268 T2254 relcl involved,protein
R1222 T2269 T2268 auxpass is,involved
R1223 T2270 T2268 prep in,involved
R1224 T2271 T2272 nmod magnesium,efflux
R1225 T2272 T2270 pobj efflux,in
R1226 T2273 T2271 cc and,magnesium
R1227 T2274 T2271 conj cobalt,magnesium
R1228 T2275 T2276 punct [,7
R1229 T2276 T2238 parataxis 7,showed
R1230 T2277 T2276 punct ],7
R1231 T2278 T2238 punct .,showed
R1232 T2280 T2281 amod High,homology
R1233 T2281 T2283 nsubjpass homology,observed
R1234 T2282 T2281 compound AA,homology
R1235 T2284 T2283 auxpass was,observed
R1236 T2285 T2283 advmod also,observed
R1237 T2286 T2283 prep between,observed
R1238 T2287 T2288 det the,proteins
R1239 T2288 T2286 pobj proteins,between
R1240 T2289 T2288 compound Acdp,proteins
R1241 T2290 T2288 cc and,proteins
R1242 T2291 T2292 det the,protein
R1243 T2292 T2288 conj protein,proteins
R1244 T2293 T2292 compound yeast,protein
R1245 T2294 T2292 compound Amip3,protein
R1246 T2295 T2296 punct (,identity
R1247 T2296 T2283 parataxis identity,observed
R1248 T2297 T2296 nummod 35,identity
R1249 T2298 T2297 quantmod %,35
R1250 T2299 T2296 compound AA,identity
R1251 T2300 T2296 prep with,identity
R1252 T2301 T2302 nummod 56,homology
R1253 T2302 T2300 pobj homology,with
R1254 T2303 T2301 quantmod %,56
R1255 T2304 T2296 punct ),identity
R1256 T2305 T2283 punct .,observed
R1257 T2307 T2308 det The,Amip3
R1258 T2308 T2309 nsubj Amip3,is
R1259 T2310 T2309 acomp likely,is
R1260 T2311 T2312 aux to,be
R1261 T2312 T2310 xcomp be,likely
R1262 T2313 T2314 det a,homologous
R1263 T2314 T2312 attr homologous,be
R1264 T2315 T2314 prep to,homologous
R1265 T2316 T2317 det the,protein
R1266 T2317 T2315 pobj protein,to
R1267 T2318 T2317 compound bacteria,protein
R1268 T2319 T2317 compound CorC,protein
R1269 T2320 T2309 punct .,is
R1270 T2322 T2323 det The,mutants
R1271 T2323 T2325 nsubj mutants,confer
R1272 T2324 T2323 compound Amip3,mutants
R1273 T2326 T2325 dobj resistance,confer
R1274 T2327 T2326 prep to,resistance
R1275 T2328 T2329 compound copper,toxicity
R1276 T2329 T2327 pobj toxicity,to
R1277 T2330 T2331 punct (,Dr.
R1278 T2331 T2325 meta Dr.,confer
R1279 T2332 T2331 amod Personal,Dr.
R1280 T2333 T2331 nmod communication,Dr.
R1281 T2334 T2331 nmod with,Dr.
R1282 T2335 T2331 nmod V.C.,Dr.
R1283 T2336 T2331 nmod Culotte,Dr.
R1284 T2337 T2331 punct ", ",Dr.
R1336 T2394 T2385 conj domains,domains
R1338 T2396 T2394 cc and,domains
R1339 T2397 T2398 det a,domain
R1340 T2398 T2394 conj domain,domains
R1341 T2399 T2398 compound DUF21,domain
R1342 T2400 T2401 dep that,found
R1343 T2401 T2385 relcl found,domains
R1344 T2402 T2401 auxpass are,found
R1345 T2403 T2401 prep in,found
R1346 T2404 T2405 nmod bacteria,CorC
R1347 T2405 T2406 nmod CorC,proteins
R1348 T2406 T2403 pobj proteins,in
R1349 T2407 T2405 cc and,CorC
R1350 T2408 T2409 compound yeast,Amip3
R1351 T2409 T2405 conj Amip3,CorC
R1352 T2410 T2377 punct .,found
R1353 T2412 T2413 compound CBS,domains
R1354 T2413 T2414 nsubj domains,are
R1355 T2415 T2416 amod small,modules
R1356 T2416 T2414 attr modules,are
R1357 T2417 T2416 amod intracellular,modules
R1358 T2418 T2419 dep that,found
R1359 T2419 T2416 relcl found,modules
R1360 T2420 T2419 auxpass are,found
R1361 T2421 T2419 advmod mostly,found
R1362 T2422 T2419 prep in,found
R1363 T2423 T2424 nummod 2,copies
R1364 T2424 T2422 pobj copies,in
R1365 T2425 T2423 cc or,2
R1366 T2426 T2423 conj four,2
R1367 T2427 T2419 prep within,found
R1368 T2428 T2429 det a,protein
R1369 T2429 T2427 pobj protein,within
R1370 T2430 T2414 punct .,are
R1371 T2432 T2433 nsubj Pairs,dimerise
R1372 T2434 T2432 prep of,Pairs
R1373 T2435 T2436 compound CBS,domains
R1374 T2436 T2434 pobj domains,of
R1375 T2437 T2438 aux to,form
R1376 T2438 T2433 advcl form,dimerise
R1377 T2439 T2440 det a,domain
R1378 T2440 T2438 dobj domain,form
R1379 T2441 T2440 amod stable,domain
R1380 T2442 T2440 amod globular,domain
R1381 T2443 T2444 punct [,8
R1382 T2444 T2433 parataxis 8,dimerise
R1383 T2445 T2444 punct ],8
R1384 T2446 T2433 punct .,dimerise
R1385 T2448 T2449 nsubj DUF21,is
R1386 T2450 T2451 punct (,pfam01959.9
R1387 T2451 T2448 parataxis pfam01959.9,DUF21
R1388 T2452 T2451 dep CD,pfam01959.9
R1389 T2453 T2451 punct : ,pfam01959.9
R1390 T2454 T2451 punct ),pfam01959.9
R1391 T2455 T2456 det a,domain
R1392 T2456 T2449 attr domain,is
R1393 T2457 T2458 advmod newly,defined
R1394 T2458 T2456 amod defined,domain
R1395 T2459 T2456 prep with,domain
R1396 T2460 T2461 amod unknown,function
R1397 T2461 T2459 pobj function,with
R1398 T2462 T2449 punct .,is
R1399 T2464 T2465 det This,domain
R1400 T2465 T2466 nsubj domain,is
R1401 T2467 T2468 det a,region
R1402 T2468 T2466 attr region,is
R1403 T2469 T2468 amod transmembrane,region
R1404 T2470 T2468 cc and,region
R1405 T2471 T2468 conj found,region
R1406 T2472 T2473 aux to,located
R1407 T2473 T2471 xcomp located,found
R1408 T2474 T2473 auxpass be,located
R1409 T2475 T2473 prep in,located
R1410 T2476 T2477 det the,terminus
R1411 T2477 T2475 pobj terminus,in
R1412 T2478 T2477 compound N,terminus
R1413 T2479 T2477 punct -,terminus
R1414 T2480 T2477 prep of,terminus
R1415 T2481 T2482 det the,proteins
R1416 T2482 T2480 pobj proteins,of
R1417 T2483 T2482 amod adjacent,proteins
R1464 T2534 T2532 amod rich,region
R1465 T2535 T2534 punct -,rich
R1466 T2536 T2537 punct (,SGLRLSLLSLDPVELRVL
R1467 T2537 T2532 parataxis SGLRLSLLSLDPVELRVL,region
R1468 T2538 T2537 dep 204,SGLRLSLLSLDPVELRVL
R1469 T2539 T2540 punct –,257
R1470 T2540 T2538 prep 257,204
R1471 T2541 T2537 punct : ,SGLRLSLLSLDPVELRVL
R1472 T2542 T2537 compound LLRVRPRLYGPGGDLLPPAWLRALGALLLLALSALF,SGLRLSLLSLDPVELRVL
R1473 T2543 T2537 punct ),SGLRLSLLSLDPVELRVL
R1474 T2544 T2532 punct ", ",region
R1475 T2545 T2546 det a,region
R1476 T2546 T2532 conj region,region
R1477 T2547 T2548 npadvmod Proline,rich
R1478 T2548 T2546 amod rich,region
R1479 T2549 T2548 punct -,rich
R1480 T2550 T2551 punct (,PGENGTGDWAPRLVFIEEPPGAGGAAPSAVPTRPPGP
R1481 T2551 T2546 parataxis PGENGTGDWAPRLVFIEEPPGAGGAAPSAVPTRPPGP,region
R1482 T2552 T2551 dep 78,PGENGTGDWAPRLVFIEEPPGAGGAAPSAVPTRPPGP
R1483 T2553 T2554 punct –,130
R1484 T2554 T2552 prep 130,78
R1485 T2555 T2551 punct : ,PGENGTGDWAPRLVFIEEPPGAGGAAPSAVPTRPPGP
R1486 T2556 T2551 compound PGPPVPAAPVPAPSLA,PGENGTGDWAPRLVFIEEPPGAGGAAPSAVPTRPPGP
R1487 T2557 T2551 punct ),PGENGTGDWAPRLVFIEEPPGAGGAAPSAVPTRPPGP
R1488 T2558 T2546 punct ", ",region
R1489 T2559 T2546 cc and,region
R1490 T2560 T2561 nummod two,sites
R1491 T2561 T2546 conj sites,region
R1492 T2562 T2561 compound amidation,sites
R1493 T2563 T2564 punct (,SGRK
R1494 T2564 T2561 parataxis SGRK,sites
R1495 T2565 T2566 dep 917,MGKK
R1496 T2566 T2564 dep MGKK,SGRK
R1497 T2567 T2568 punct –,920
R1498 T2568 T2565 prep 920,917
R1499 T2569 T2566 punct : ,MGKK
R1500 T2570 T2564 punct ;,SGRK
R1501 T2571 T2564 dep 926,SGRK
R1502 T2572 T2573 punct –,929
R1503 T2573 T2571 prep 929,926
R1504 T2574 T2564 punct : ,SGRK
R1505 T2575 T2564 punct ),SGRK
R1506 T2576 T2514 punct .,contains
R1507 T2578 T2579 nsubj Acdp2,has
R1508 T2580 T2581 det a,region
R1509 T2581 T2579 dobj region,has
R1510 T2582 T2583 npadvmod glycine,rich
R1511 T2583 T2581 amod rich,region
R1512 T2584 T2583 punct -,rich
R1513 T2585 T2586 punct (,GAGGSGSASGTVGGKGGAGVAG
R1514 T2586 T2581 parataxis GAGGSGSASGTVGGKGGAGVAG,region
R1515 T2587 T2586 dep 201,GAGGSGSASGTVGGKGGAGVAG
R1516 T2588 T2589 punct –,222
R1517 T2589 T2587 prep 222,201
R1518 T2590 T2586 punct : ,GAGGSGSASGTVGGKGGAGVAG
R1519 T2591 T2586 punct ),GAGGSGSASGTVGGKGGAGVAG
R1520 T2592 T2579 punct .,has
R1521 T2594 T2595 nsubj Acdp3,possesses
R1522 T2596 T2597 det a,region
R1523 T2597 T2595 dobj region,possesses
R1524 T2598 T2597 amod large,region
R1525 T2599 T2600 npadvmod alanine,rich
R1526 T2600 T2597 amod rich,region
R1527 T2601 T2600 punct -,rich
R1528 T2602 T2603 punct (,2
R1529 T2603 T2597 parataxis 2,region
R1530 T2604 T2605 punct –,261
R1531 T2605 T2603 prep 261,2
R1532 T2606 T2603 punct ),2
R1533 T2607 T2597 cc and,region
R1534 T2608 T2609 det a,region
R1535 T2609 T2597 conj region,region
R1536 T2610 T2609 amod large,region
R1537 T2611 T2612 npadvmod leucine,rich
R1538 T2612 T2609 amod rich,region
R1539 T2613 T2612 punct -,rich
R1540 T2614 T2615 punct (,201
R1541 T2615 T2609 parataxis 201,region
R1542 T2616 T2617 punct –,299
R1543 T2617 T2615 prep 299,201
R1544 T2618 T2615 punct ),201
R1545 T2619 T2595 punct .,possesses
R1546 T2621 T2622 nsubj Acdp4,contains
R1547 T2623 T2624 det a,pattern
R1548 T2624 T2622 dobj pattern,contains
R1549 T2625 T2624 compound leucine,pattern
R1550 T2626 T2624 compound zipper,pattern
R1551 T2627 T2628 punct (,LVMVLLVLSGIFSGLNLGLMAL
R1552 T2628 T2624 parataxis LVMVLLVLSGIFSGLNLGLMAL,pattern
R1553 T2629 T2628 dep 185,LVMVLLVLSGIFSGLNLGLMAL
R1554 T2630 T2631 punct –,206
R1555 T2631 T2629 prep 206,185
R1556 T2632 T2628 punct : ,LVMVLLVLSGIFSGLNLGLMAL
R1557 T2633 T2628 punct ),LVMVLLVLSGIFSGLNLGLMAL
R1558 T2634 T2624 cc and,pattern
R1559 T2635 T2636 det an,site
R1560 T2636 T2624 conj site,pattern
R1561 T2637 T2636 compound amidation,site
R1562 T2638 T2639 punct (,GGRR
R1563 T2639 T2636 parataxis GGRR,site
R1564 T2640 T2639 dep 7,GGRR
R1565 T2641 T2642 punct –,10
R1566 T2642 T2640 prep 10,7
R1567 T2643 T2639 punct : ,GGRR
R1568 T2644 T2639 punct ),GGRR
R1569 T2645 T2622 punct .,contains
R3572 T5826 T5827 compound Amino,acid
R3573 T5827 T5828 compound acid,sequence
R3574 T5828 T5829 compound sequence,alignment
R3575 T5830 T5829 compound homology,alignment
R3576 T5831 T5829 prep for,alignment
R3577 T5832 T5831 pobj all,for
R3578 T5833 T5832 prep of,all
R3579 T5834 T5835 det the,genes
R3580 T5835 T5833 pobj genes,of
R3581 T5836 T5835 nmod ACDP,genes
R3582 T5837 T5836 cc and,ACDP
R3583 T5838 T5836 conj Acdp,ACDP
R3584 T5839 T5835 prep within,genes
R3585 T5840 T5841 det the,domain
R3586 T5841 T5839 pobj domain,within
R3587 T5842 T5841 compound ACD,domain
R3588 T5843 T5829 punct .,alignment
R3589 T5845 T5846 det The,data
R3590 T5846 T5848 nsubjpass data,deposited
R3591 T5847 T5846 compound sequence,data
R3592 T5849 T5846 prep for,data
R3593 T5850 T5851 det the,genes
R3594 T5851 T5849 pobj genes,for
R3595 T5852 T5851 compound Acdp,genes
R3596 T5853 T5848 aux have,deposited
R3597 T5854 T5848 auxpass been,deposited
R3598 T5855 T5848 prep in,deposited
R3599 T5856 T5855 pobj GenBank,in
R3600 T5857 T5848 prep under,deposited
R3601 T5858 T5859 compound accession,AF202994
R3602 T5859 T5857 pobj AF202994,under
R3603 T5860 T5859 compound number,AF202994
R3604 T5861 T5859 punct (,AF202994
R3605 T5862 T5859 appos Acdp1,AF202994
R3606 T5863 T5859 punct ),AF202994
R3607 T5864 T5859 punct ", ",AF202994
R3608 T5865 T5859 conj AF216961,AF202994
R3609 T5866 T5865 punct (,AF216961
R3610 T5867 T5865 appos Acdp2,AF216961
R3611 T5868 T5865 punct ),AF216961
R3612 T5869 T5865 punct ", ",AF216961
R3613 T5870 T5865 conj AF216964,AF216961
R3614 T5871 T5870 punct (,AF216964
R3615 T5872 T5870 appos Acdp3,AF216964
R3616 T5873 T5870 punct ),AF216964
R3617 T5874 T5870 cc and,AF216964
R3618 T5875 T5870 conj AF216963,AF216964
R3619 T5876 T5875 punct (,AF216963
R3620 T5877 T5875 appos Acdp4,AF216963
R3621 T5878 T5859 punct ),AF202994
R3622 T5879 T5848 punct .,deposited
R3623 T5881 T5882 amod Identical,acids
R3624 T5882 T5884 nsubjpass acids,shaded
R3625 T5883 T5882 compound amino,acids
R3626 T5885 T5882 cc or,acids
R3627 T5886 T5887 compound amino,acids
R3628 T5887 T5882 conj acids,acids
R3629 T5888 T5887 prep with,acids
R3630 T5889 T5890 advmod very,strong
R3631 T5890 T5891 amod strong,homologies
R3632 T5891 T5888 pobj homologies,with
R3633 T5892 T5891 prep among,homologies
R3634 T5893 T5894 det all,proteins
R3635 T5894 T5892 pobj proteins,among
R3636 T5895 T5884 auxpass were,shaded
R3637 T5896 T5884 oprd black,shaded
R3638 T5897 T5884 punct .,shaded
R3639 T5899 T5900 amod Identical,acids
R3640 T5900 T5902 nsubjpass acids,shaded
R3641 T5901 T5900 compound amino,acids
R3642 T5903 T5900 cc or,acids
R3643 T5904 T5905 compound amino,acids
R3644 T5905 T5900 conj acids,acids
R3645 T5906 T5905 prep with,acids
R3646 T5907 T5908 advmod very,strong
R3647 T5908 T5909 amod strong,homologies
R3648 T5909 T5906 pobj homologies,with
R3649 T5910 T5909 prep in,homologies
R3650 T5911 T5910 pobj most,in
R3651 T5912 T5911 prep of,most
R3652 T5913 T5914 det the,proteins
R3653 T5914 T5912 pobj proteins,of
R3654 T5915 T5902 auxpass were,shaded
R3655 T5916 T5902 oprd grey,shaded
R3656 T5917 T5902 punct .,shaded
R3657 T5919 T5920 compound Dot,lines
R3658 T5920 T5921 nsubj lines,represent
R3659 T5922 T5921 dobj gaps,represent
R3660 T5923 T5922 prep for,gaps
R3661 T5924 T5925 det the,alignment
R3662 T5925 T5923 pobj alignment,for
R3663 T5926 T5921 punct .,represent
R3664 T6010 T6011 compound Amino,acid
R3665 T6011 T6012 compound acid,alignment
R3666 T6013 T6012 compound sequence,alignment
R3667 T6014 T6012 acl showing,alignment
R3668 T6015 T6016 det the,conservation
R3669 T6016 T6014 dobj conservation,showing
R3670 T6017 T6016 prep of,conservation
R3671 T6018 T6019 compound ACD,domain
R3672 T6019 T6017 pobj domain,of
R3673 T6020 T6014 prep in,showing
R3674 T6021 T6022 amod various,species
R3675 T6022 T6020 pobj species,in
R3676 T6023 T6012 punct .,alignment
R3677 T6025 T6026 nsubj Amip3,is
R3678 T6027 T6028 det a,protein
R3679 T6028 T6026 attr protein,is
R3680 T6029 T6028 prep from,protein
R3681 T6030 T6031 compound Saccharomyces,cerevisiae
R3682 T6031 T6029 pobj cerevisiae,from
R3683 T6032 T6028 punct (,protein
R3684 T6033 T6028 appos NP_014581,protein
R3685 T6034 T6026 punct ),is
R3686 T6035 T6026 punct .,is
R3687 T6037 T6038 nsubj CanG,is
R3688 T6039 T6040 det a,protein
R3689 T6040 T6038 attr protein,is
R3690 T6041 T6040 prep from,protein
R3691 T6042 T6043 compound Candida,glabrata
R3692 T6043 T6041 pobj glabrata,from
R3693 T6044 T6040 punct (,protein
R3694 T6045 T6040 appos AAF33142,protein
R3695 T6046 T6038 punct ),is
R3696 T6047 T6038 punct .,is
R3697 T6049 T6050 nsubj NeuC,is
R3698 T6051 T6049 punct (,NeuC
R3699 T6052 T6049 appos EAA31204,NeuC
R3700 T6053 T6050 punct ),is
R3701 T6054 T6055 det a,protein
R3702 T6055 T6050 attr protein,is
R3703 T6056 T6055 amod hypothetical,protein
R3704 T6057 T6055 prep from,protein
R3705 T6058 T6059 compound Neurospora,crassa
R3706 T6059 T6057 pobj crassa,from
R3707 T6060 T6050 punct .,is
R3708 T6062 T6063 nsubj DroM,is
R3709 T6064 T6065 det a,product
R3710 T6065 T6063 attr product,is
R3711 T6066 T6065 compound gene,product
R3712 T6067 T6065 prep from,product
R3713 T6068 T6069 compound D.,melanogaster
R3714 T6069 T6067 pobj melanogaster,from
R3715 T6070 T6063 punct .,is
R3716 T6072 T6073 det The,number
R3717 T6073 T6075 nsubj number,is
R3718 T6074 T6073 compound accession,number
R3719 T6076 T6073 prep for,number
R3720 T6077 T6078 det this,gene
R3721 T6078 T6076 pobj gene,for
R3722 T6079 T6075 attr CG40084,is
R3723 T6080 T6075 prep in,is
R3724 T6081 T6080 pobj BDGP,in
R3725 T6082 T6081 punct (,BDGP
R3726 T6083 T6084 compound Berkeley,Project
R3727 T6084 T6081 appos Project,BDGP
R3728 T6085 T6084 compound Drosophila,Project
R3729 T6086 T6084 compound Genome,Project
R3730 T6087 T6075 punct ),is
R3731 T6088 T6075 punct .,is
R3732 T6090 T6091 nsubj AnoG,represents
R3733 T6092 T6093 det a,protein
R3734 T6093 T6091 dobj protein,represents
R3735 T6094 T6093 prep from,protein
R3736 T6095 T6096 det the,str.
R3737 T6096 T6094 pobj str.,from
R3738 T6097 T6096 compound anopheles,str.
R3739 T6098 T6096 compound gambiae,str.
R3740 T6099 T6100 punct (,EAA01004
R3741 T6100 T6094 parataxis EAA01004,from
R3742 T6101 T6100 punct ),EAA01004
R3743 T6102 T6091 punct .,represents
R3744 T6104 T6105 nsubj CaeE,is
R3745 T6106 T6104 punct (,CaeE
R3746 T6107 T6104 appos AAK77203,CaeE
R3747 T6108 T6105 punct ),is
R3748 T6109 T6110 det a,protein
R3749 T6110 T6105 attr protein,is
R3750 T6111 T6110 amod hypothetical,protein
R3751 T6112 T6110 prep from,protein
R3752 T6113 T6114 det the,elegans
R3753 T6114 T6112 pobj elegans,from
R3754 T6115 T6114 compound Caenohabditis,elegans
R3755 T6116 T6105 punct .,is
R3756 T6118 T6119 nsubj CorC,represents
R3757 T6120 T6121 compound bacteria,magnesium
R3758 T6121 T6119 dobj magnesium,represents
R3759 T6122 T6121 cc and,magnesium
R3760 T6123 T6124 compound cobalt,protein
R3761 T6124 T6121 conj protein,magnesium
R3762 T6125 T6124 compound efflux,protein
R3763 T6126 T6121 prep from,magnesium
R3764 T6127 T6128 det the,oneidensis
R3765 T6128 T6126 pobj oneidensis,from
R3766 T6129 T6128 compound Shewanella,oneidensis
R3767 T6130 T6119 punct .,represents
R3768 T6132 T6133 nsubj XyFD,is
R3769 T6134 T6135 det a,protein
R3770 T6135 T6133 attr protein,is
R3771 T6136 T6135 amod hypothetical,protein
R3772 T6137 T6135 prep from,protein
R3773 T6138 T6139 det the,Dixon
R3774 T6139 T6137 pobj Dixon,from
R3775 T6140 T6139 compound Xylella,Dixon
R3776 T6141 T6139 compound fastidiosa,Dixon
R3777 T6142 T6135 punct (,protein
R3778 T6143 T6135 appos ZP_00038107,protein
R3779 T6144 T6133 punct ),is
R3780 T6145 T6133 punct .,is
R3781 T6153 T6154 amod Phylogenetic,tree
R3782 T6155 T6154 acl showing,tree
R3783 T6156 T6155 dobj relationships,showing
R3784 T6157 T6156 prep among,relationships
R3785 T6158 T6157 pobj proteins,among
R3786 T6159 T6158 acl containing,proteins
R3787 T6160 T6161 det the,domain
R3788 T6161 T6159 dobj domain,containing
R3789 T6162 T6161 compound ACD,domain
R3790 T6163 T6161 prep from,domain
R3791 T6164 T6165 nmod figure,2
R3792 T6165 T6163 pobj 2,from
R3793 T6166 T6165 cc and,2
R3794 T6167 T6165 conj 3,2
R3795 T6168 T6154 punct .,tree
R3796 T6170 T6171 det The,tree
R3797 T6171 T6173 nsubjpass tree,constructed
R3798 T6172 T6171 amod phylogenetic,tree
R3799 T6174 T6173 auxpass was,constructed
R3800 T6175 T6173 prep according,constructed
R3801 T6176 T6175 prep to,according
R3802 T6177 T6178 det the,calculation
R3803 T6178 T6176 pobj calculation,to
R3804 T6179 T6178 prep of,calculation
R3805 T6180 T6181 det the,match
R3806 T6181 T6179 pobj match,of
R3807 T6182 T6181 amod best,match
R3808 T6183 T6181 prep for,match
R3809 T6184 T6185 det the,sequences
R3810 T6185 T6183 pobj sequences,for
R3811 T6186 T6185 amod selected,sequences
R3812 T6187 T6173 punct .,constructed
R3813 T6189 T6190 nsubj Abbreviations,are
R3814 T6191 T6189 prep for,Abbreviations
R3815 T6192 T6193 det each,protein
R3816 T6193 T6191 pobj protein,for
R3817 T6194 T6195 det the,same
R3818 T6195 T6190 attr same,are
R3819 T6196 T6197 mark as,presented
R3820 T6197 T6195 advcl presented,same
R3821 T6198 T6197 prep in,presented
R3822 T6199 T6198 pobj figure,in
R3823 T6200 T6199 nummod 3,figure
R3824 T6201 T6190 punct .,are
R3825 T6228 T6229 nummod Four,domains
R3826 T6230 T6229 compound transmembrane,domains
R3827 T6231 T6229 prep within,domains
R3828 T6232 T6233 compound Acdp4,protein
R3829 T6233 T6231 pobj protein,within
R3830 T6234 T6229 punct .,domains
R3831 T6236 T6237 compound Transmembrane,domains
R3832 T6237 T6238 nsubjpass domains,predicted
R3833 T6239 T6238 auxpass were,predicted
R3834 T6240 T6238 prep by,predicted
R3835 T6241 T6242 det the,program
R3836 T6242 T6240 pobj program,by
R3837 T6243 T6242 compound TMHMM,program
R3838 T6244 T6238 punct .,predicted
R3839 T6246 T6247 det The,plot
R3840 T6247 T6248 nsubj plot,shows
R3841 T6249 T6250 det the,probabilities
R3842 T6250 T6248 dobj probabilities,shows
R3843 T6251 T6250 amod posterior,probabilities
R3844 T6252 T6250 prep of,probabilities
R3845 T6253 T6254 amod inside,TM
R3846 T6254 T6258 compound TM,helix
R3847 T6255 T6254 punct /,TM
R3848 T6256 T6254 amod outside,TM
R3849 T6257 T6254 punct /,TM
R3850 T6258 T6252 pobj helix,of
R3851 T6259 T6248 punct .,shows
R3852 T6261 T6262 prep At,shown
R3853 T6263 T6264 det the,top
R3854 T6264 T6261 pobj top,At
R3855 T6265 T6264 prep of,top
R3856 T6266 T6267 det the,plot
R3857 T6267 T6265 pobj plot,of
R3858 T6268 T6261 punct (,At
R3859 T6269 T6261 prep between,At
R3860 T6270 T6269 pobj 1,between
R3861 T6271 T6270 cc and,1
R3862 T6272 T6270 conj 1.2,1
R3863 T6273 T6262 punct ),shown
R3864 T6274 T6275 det the,prediction
R3865 T6275 T6262 nsubjpass prediction,shown
R3866 T6276 T6277 npadvmod N,best
R3867 T6277 T6275 amod best,prediction
R3868 T6278 T6277 punct -,best
R3869 T6279 T6262 auxpass is,shown
R3870 T6280 T6262 punct .,shown
R3871 T6282 T6283 det The,plot
R3872 T6283 T6284 nsubjpass plot,obtained
R3873 T6285 T6284 auxpass is,obtained
R3874 T6286 T6284 prep by,obtained
R3875 T6287 T6286 pcomp calculating,by
R3876 T6288 T6289 det the,probability
R3877 T6289 T6287 dobj probability,calculating
R3878 T6290 T6289 amod total,probability
R3879 T6291 T6292 mark that,sits
R3880 T6292 T6289 acl sits,probability
R3881 T6293 T6294 det a,residue
R3882 T6294 T6292 nsubj residue,sits
R3883 T6295 T6292 prep in,sits
R3884 T6296 T6295 pobj helix,in
R3885 T6297 T6292 punct ", ",sits
R3886 T6298 T6292 advmod inside,sits
R3887 T6299 T6298 punct ", ",inside
R3888 T6300 T6298 cc or,inside
R3889 T6301 T6298 conj outside,inside
R3890 T6302 T6289 acl summed,probability
R3891 T6303 T6302 prep over,summed
R3892 T6304 T6305 det all,paths
R3893 T6305 T6303 pobj paths,over
R3894 T6306 T6305 amod possible,paths
R3895 T6307 T6305 prep through,paths
R3896 T6308 T6309 det the,model
R3897 T6309 T6307 pobj model,through
R3898 T6310 T6284 punct .,obtained
R4094 T6626 T6627 compound amino,acid
R4095 T6627 T6623 conj acid,Nucleotide
R4096 T6628 T6629 punct (,%
R4097 T6629 T6624 parataxis %,homologies
R4098 T6630 T6629 punct ),%
R4099 T6631 T6624 prep between,homologies
R4100 T6632 T6633 amod human,ACDP
R4101 T6633 T6634 nmod ACDP,members
R4102 T6634 T6631 pobj members,between
R4103 T6635 T6633 cc and,ACDP
R4104 T6636 T6637 compound mouse,Acdp
R4105 T6637 T6633 conj Acdp,ACDP
R4106 T6638 T6624 punct .,homologies
R1312 T2367 T2365 prep of,homology
R1313 T2368 T2367 pobj proteins,of
R1314 T2369 T2370 punct (,Fig.
R4092 T6623 T6624 nmod Nucleotide,homologies
R4093 T6625 T6623 cc and,Nucleotide
R1285 T2338 T2331 nmod John,Dr.
R1286 T2339 T2331 nmod Hopkins,Dr.
R1287 T2340 T2331 nmod Bloomberg,Dr.
R1288 T2341 T2331 punct ", ",Dr.
R1289 T2342 T2331 nmod School,Dr.
R1290 T2343 T2331 nmod of,Dr.
R1291 T2344 T2331 nmod Public,Dr.
R1292 T2345 T2331 nmod Health,Dr.
R1293 T2346 T2331 punct ),Dr.
R1294 T2347 T2325 punct .,confer
R1295 T2349 T2350 det The,relationships
R1296 T2350 T2352 nsubjpass relationships,illustrated
R1297 T2351 T2350 amod evolutionary,relationships
R1298 T2353 T2350 prep among,relationships
R1299 T2354 T2355 det those,proteins
R1300 T2355 T2353 pobj proteins,among
R1301 T2356 T2352 auxpass are,illustrated
R1302 T2357 T2352 prep by,illustrated
R1303 T2358 T2359 det a,tree
R1304 T2359 T2357 pobj tree,by
R1305 T2360 T2359 amod phylogenetic,tree
R1306 T2361 T2359 acl constructed,tree
R1307 T2362 T2361 prep based,constructed
R1308 T2363 T2362 prep on,based
R1309 T2364 T2365 det the,homology
R1310 T2365 T2363 pobj homology,on
R1311 T2366 T2365 compound AA,homology
R1315 T2370 T2352 parataxis Fig.,illustrated
R1316 T2371 T2370 nummod 4,Fig.
R1317 T2372 T2370 punct ),Fig.
R1318 T2373 T2352 punct .,illustrated
R1319 T2376 T2377 nsubj We,found
R1320 T2378 T2379 mark that,contain
R1321 T2379 T2377 ccomp contain,found
R1322 T2380 T2381 det all,members
R1323 T2381 T2379 nsubj members,contain
R1324 T2382 T2381 compound mouse,members
R1325 T2383 T2381 compound Acdp,members
R1326 T2384 T2385 nummod four,domains
R1327 T2385 T2379 dobj domains,contain
R1328 T2386 T2385 amod distinct,domains
R1329 T2387 T2385 compound transmembrane,domains
R1330 T2388 T2389 punct (,Fig.
R1331 T2389 T2385 parataxis Fig.,domains
R1332 T2390 T2389 nummod 5,Fig.
R1333 T2391 T2389 punct ),Fig.
R1334 T2392 T2385 punct ", ",domains
R1335 T2393 T2394 nummod two,domains
R1337 T2395 T2394 compound CBS,domains
R1418 T2484 T2483 prep to,adjacent
R1419 T2485 T2486 nummod two,domains
R1420 T2486 T2484 pobj domains,to
R1421 T2487 T2486 amod intracellular,domains
R1422 T2488 T2486 compound CBS,domains
R1423 T2489 T2466 punct .,is
R1424 T2491 T2492 det A,domain
R1425 T2492 T2496 nsubjpass domain,found
R1426 T2493 T2494 npadvmod cNMP,binding
R1427 T2494 T2492 amod binding,domain
R1428 T2495 T2494 punct -,binding
R1429 T2497 T2498 punct (,domain
R1430 T2498 T2492 parataxis domain,domain
R1431 T2499 T2500 amod cyclic,monophosphate
R1432 T2500 T2498 nmod monophosphate,domain
R1433 T2501 T2500 nmod nucleotide,monophosphate
R1434 T2502 T2500 punct -,monophosphate
R1435 T2503 T2500 punct -,monophosphate
R1436 T2504 T2500 amod binding,monophosphate
R1437 T2505 T2498 punct ),domain
R1438 T2506 T2496 auxpass was,found
R1439 T2507 T2496 prep in,found
R1440 T2508 T2509 det all,members
R1441 T2509 T2507 pobj members,in
R1442 T2510 T2509 compound Acdp,members
R1443 T2511 T2496 punct .,found
R1444 T2513 T2514 prep In,contains
R1445 T2515 T2513 pobj addition,In
R1446 T2516 T2514 punct ", ",contains
R1447 T2517 T2514 nsubj Acdp1,contains
R1448 T2518 T2519 det an,region
R1449 T2519 T2514 dobj region,contains
R1450 T2520 T2521 npadvmod Alanine,rich
R1451 T2521 T2519 amod rich,region
R1452 T2522 T2521 punct -,rich
R1453 T2523 T2524 punct (,AAAAAAAAA
R1454 T2524 T2519 parataxis AAAAAAAAA,region
R1455 T2525 T2524 dep 2,AAAAAAAAA
R1456 T2526 T2527 punct –,10
R1457 T2527 T2525 prep 10,2
R1458 T2528 T2524 punct : ,AAAAAAAAA
R1459 T2529 T2524 punct ),AAAAAAAAA
R1460 T2530 T2519 punct ", ",region
R1461 T2531 T2532 det a,region
R1462 T2532 T2519 conj region,region
R1463 T2533 T2534 npadvmod Leucine,rich

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5981 3197-3221 NCBITaxon:155919 denotes Xylella fastidiosa Dixon
T5980 3134-3155 NCBITaxon:70863 denotes Shewanella oneidensis
T5979 3080-3088 NCBITaxon:2 denotes bacteria
T5978 3064-3068 PR:000022321 denotes CorC
T5977 3041-3062 NCBITaxon:6239 denotes Caenohabditis elegans
T5976 2955-2972 NCBITaxon:7165 denotes anopheles gambiae
T5975 2903-2909 SO:0001026 denotes Genome
T5974 2892-2902 NCBITaxon:7215 denotes Drosophila
T5973 2858-2862 SO:0000704 denotes gene
T5972 2811-2826 NCBITaxon:7227 denotes D. melanogaster
T5971 2793-2797 SO:0000704 denotes gene
T5970 2764-2781 NCBITaxon:5141 denotes Neurospora crassa
T5969 2688-2704 NCBITaxon:5478 denotes Candida glabrata
T5968 2627-2651 NCBITaxon:4932 denotes Saccharomyces cerevisiae
T5967 2594-2601 NCBITaxon:species denotes species
T5966 2576-2582 SO:0000417 denotes domain
T5802 2480-2484 SO:0000730 denotes gaps
T5801 2407-2417 SO:0000857 denotes homologies
T5800 2304-2314 SO:0000857 denotes homologies
T5799 2242-2247 PR:000005646 denotes Acdp4
T5798 2221-2226 PR:000005645 denotes Acdp3
T5797 2203-2208 PR:000005644 denotes Acdp2
T5796 2185-2190 PR:000005643 denotes Acdp1
T5795 2115-2120 SO:0000704 denotes genes
T5794 2076-2082 SO:0000417 denotes domain
T5793 2055-2060 SO:0000704 denotes genes
T5792 2007-2015 SO:0000857 denotes homology
T6218 4550-4555 SO:0001114 denotes helix
T6217 4384-4392 SO:0001812 denotes TM helix
T6216 4276-4283 SO:0000417 denotes domains
T6215 4267-4275 GO:0016020 denotes membrane
T6214 4247-4252 PR:000005646 denotes Acdp4
T6213 4232-4239 SO:0000417 denotes domains
T6212 4223-4231 GO:0016020 denotes membrane
T6148 3321-3327 SO:0000417 denotes domain
T1878 5173-5182 GO:0018032 denotes amidation
T1877 5092-5097 PR:000005646 denotes Acdp4
T1876 4997-5002 PR:000005645 denotes Acdp3
T1875 4930-4935 PR:000005644 denotes Acdp2
T1874 4882-4891 GO:0018032 denotes amidation
T1873 4639-4644 PR:000005643 denotes Acdp1
T1872 4164-4170 SO:0000417 denotes domain
T1871 4116-4122 SO:0000417 denotes domain
T1870 4091-4098 SO:0000417 denotes domains
T1869 4073-4086 GO:0005622 denotes intracellular
T1868 3983-3991 GO:0016020 denotes membrane
T1867 3978-3998 SO:0001077 denotes transmembrane region
T1866 3966-3972 SO:0000417 denotes domain
T1800 9-17 SO:0000857 denotes homology
T1801 52-57 NCBITaxon:10088 denotes mouse
T1802 63-68 SO:0000704 denotes genes
T1803 88-98 SO:0000857 denotes homologies
T1804 142-147 NCBITaxon:9606 denotes human
T1805 153-158 SO:0000704 denotes genes
T1806 182-192 SO:0000857 denotes homologies
T1807 219-224 NCBITaxon:9606 denotes human
T1808 225-230 PR:000005644 denotes ACDP2
T1809 239-244 NCBITaxon:10088 denotes mouse
T1810 245-250 PR:000005644 denotes Acdp2
T1811 251-255 SO:0000704 denotes gene
T1812 320-328 SO:0000857 denotes homology
T1813 348-354 SO:0000204 denotes 5' UTR
T1814 380-382 SO:0000028 denotes bp
T1815 405-416 SO:0000318 denotes start codon
T1816 435-445 SO:0000857 denotes homologies
T1817 453-458 NCBITaxon:9606 denotes human
T1818 459-467 SO:0000853 denotes homologs
T1819 486-491 PR:000005644 denotes Acdp2
T1820 492-498 SO:0000204 denotes 5' UTR
T1821 537-542 NCBITaxon:9606 denotes human
T1822 543-550 SO:0000853 denotes homolog
T1823 565-575 SO:0000857 denotes homologies
T1824 583-589 SO:0000205 denotes 3' UTR
T1825 604-606 SO:0000028 denotes bp
T1826 628-638 SO:0000319 denotes stop codon
T6613 1743-1753 SO:0000857 denotes homologies
T6614 1766-1771 NCBITaxon:9606 denotes human
T6615 1781-1786 NCBITaxon:10088 denotes mouse
T1865 3931-3937 SO:0000417 denotes domain
T1864 3876-3882 SO:0000417 denotes domain
T1863 3841-3849 GO:0046983 denotes dimerise
T1862 3833-3840 SO:0000417 denotes domains
T1861 3752-3759 SO:0000417 denotes modules
T1860 3738-3751 GO:0005622 denotes intracellular
T1859 3720-3727 SO:0000417 denotes domains
T1858 3685-3689 PR:000022321 denotes CorC
T1857 3676-3684 NCBITaxon:2 denotes bacteria
T1856 3651-3657 SO:0000417 denotes domain
T1855 3631-3638 SO:0000417 denotes domains
T1854 3605-3612 SO:0000417 denotes domains
T1853 3596-3604 GO:0016020 denotes membrane
T1852 3550-3555 NCBITaxon:10088 denotes mouse
T1827 678-683 SO:0000704 denotes genes
T1828 691-696 PR:000005646 denotes Acdp4
T1829 718-723 NCBITaxon:9606 denotes human
T1830 724-731 SO:0000853 denotes homolog
T1831 756-762 SO:0000417 denotes domain
T1832 807-815 SO:0000857 denotes homology
T1833 828-833 NCBITaxon:10088 denotes mouse
T1834 838-843 NCBITaxon:9606 denotes human
T1835 876-882 SO:0000417 denotes domain
T1836 924-931 NCBITaxon:species denotes species
T1837 945-953 NCBITaxon:2 denotes bacteria
T1838 962-972 NCBITaxon:6239 denotes C. elegans
T1839 974-989 NCBITaxon:7227 denotes D. melanogaster
T1840 991-996 NCBITaxon:10088 denotes mouse
T1841 1000-1005 NCBITaxon:9606 denotes human
T1842 1086-1094 SO:0000857 denotes homology
T1843 1098-1106 NCBITaxon:2 denotes bacteria
T1844 1107-1111 PR:000022321 denotes CorC
T1845 1146-1154 SO:0000857 denotes homology
T1846 1219-1227 SO:0000857 denotes homology
T1847 1326-1334 SO:0000857 denotes homology
T1848 1365-1375 SO:0000857 denotes homologous
T1849 1383-1391 NCBITaxon:2 denotes bacteria
T1850 1392-1396 PR:000022321 denotes CorC
T1851 1677-1685 SO:0000857 denotes homology

2_test

Id Subject Object Predicate Lexical cue
14723793-9775386-10642188 1207-1208 9775386 denotes 7
14723793-9020585-10642189 3884-3885 9020585 denotes 8

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6009 3197-3221 NCBITaxon:155919 denotes Xylella fastidiosa Dixon
T6008 3180-3187 CHEBI_PR_EXT:protein denotes protein
T6007 3134-3155 NCBITaxon:70863 denotes Shewanella oneidensis
T6006 3117-3124 CHEBI_PR_EXT:protein denotes protein
T6005 3103-3109 CHEBI_EXT:cobalt denotes cobalt
T6004 3089-3098 CHEBI_EXT:magnesium denotes magnesium
T6003 3080-3088 NCBITaxon:2 denotes bacteria
T6002 3064-3068 PR_EXT:000022321 denotes CorC
T6001 3041-3062 NCBITaxon:6239 denotes Caenohabditis elegans
T6000 3024-3031 CHEBI_PR_EXT:protein denotes protein
T5999 2955-2972 NCBITaxon:7165 denotes anopheles gambiae
T5998 2938-2945 CHEBI_PR_EXT:protein denotes protein
T5997 2903-2909 SO_EXT:0001026 denotes Genome
T5996 2892-2902 NCBITaxon:7215 denotes Drosophila
T5995 2858-2862 SO_EXT:0000704 denotes gene
T5994 2811-2826 NCBITaxon:7227 denotes D. melanogaster
T5993 2793-2805 SO_EXT:gene_product denotes gene product
T5992 2764-2781 NCBITaxon:5141 denotes Neurospora crassa
T5991 2751-2758 CHEBI_PR_EXT:protein denotes protein
T5990 2688-2704 NCBITaxon:5478 denotes Candida glabrata
T5989 2675-2682 CHEBI_PR_EXT:protein denotes protein
T5988 2627-2651 NCBITaxon:4932 denotes Saccharomyces cerevisiae
T5987 2614-2621 CHEBI_PR_EXT:protein denotes protein
T5986 2594-2601 NCBITaxon:species denotes species
T5985 2576-2582 SO_EXT:0000417 denotes domain
T5984 2556-2568 SO_EXT:biological_conservation_process_or_quality denotes conservation
T5983 2525-2533 SO_EXT:biological_sequence denotes sequence
T5982 2514-2524 CHEBI_SO_EXT:amino_acid denotes Amino acid
T5825 2480-2484 SO_EXT:0000730 denotes gaps
T5824 2433-2441 CHEBI_PR_EXT:protein denotes proteins
T5823 2407-2417 SO:0000857 denotes homologies
T5822 2378-2389 CHEBI_SO_EXT:amino_acid denotes amino acids
T5821 2363-2374 CHEBI_SO_EXT:amino_acid denotes amino acids
T5820 2325-2333 CHEBI_PR_EXT:protein denotes proteins
T5819 2304-2314 SO:0000857 denotes homologies
T5818 2275-2286 CHEBI_SO_EXT:amino_acid denotes amino acids
T5817 2260-2271 CHEBI_SO_EXT:amino_acid denotes amino acids
T5816 2242-2247 PR_EXT:000005646 denotes Acdp4
T5815 2221-2226 PR_EXT:000005645 denotes Acdp3
T5814 2203-2208 PR_EXT:000005644 denotes Acdp2
T5813 2185-2190 PR_EXT:000005643 denotes Acdp1
T5812 2115-2120 SO_EXT:0000704 denotes genes
T5811 2110-2114 PR_EXT:ACDP_or_CNNM denotes Acdp
T5810 2088-2096 SO_EXT:biological_sequence denotes sequence
T5809 2076-2082 SO_EXT:0000417 denotes domain
T5808 2055-2060 SO_EXT:0000704 denotes genes
T5807 2050-2054 PR_EXT:ACDP_or_CNNM denotes Acdp
T5806 2041-2045 PR_EXT:ACDP_or_CNNM denotes ACDP
T5805 2007-2015 SO:0000857 denotes homology
T5804 1998-2006 SO_EXT:biological_sequence denotes sequence
T5803 1987-1997 CHEBI_SO_EXT:amino_acid denotes Amino acid
T6227 4550-4555 SO_EXT:0001114 denotes helix
T6226 4534-4541 CHEBI_EXT:residue denotes residue
T6225 4384-4392 SO_EXT:0001812 denotes TM helix
T6224 4276-4283 SO_EXT:0000417 denotes domains
T6223 4267-4275 GO:0016020 denotes membrane
T6222 4253-4260 CHEBI_PR_EXT:protein denotes protein
T6221 4247-4252 PR_EXT:000005646 denotes Acdp4
T6220 4232-4239 SO_EXT:0000417 denotes domains
T6219 4223-4231 GO:0016020 denotes membrane
T6152 3485-3492 CHEBI_PR_EXT:protein denotes protein
T6151 3451-3460 SO_EXT:biological_sequence denotes sequences
T6150 3321-3327 SO_EXT:0000417 denotes domain
T6149 3293-3301 CHEBI_PR_EXT:protein denotes proteins
T2018 5173-5182 GO:0018032 denotes amidation
T2017 5109-5116 CHEBI_SO_EXT:leucine denotes leucine
T2016 5092-5097 PR_EXT:000005646 denotes Acdp4
T2015 5061-5068 CHEBI_SO_EXT:leucine denotes leucine
T2014 5021-5028 CHEBI_SO_EXT:alanine denotes alanine
T2013 4997-5002 PR_EXT:000005645 denotes Acdp3
T2012 4942-4949 CHEBI_SO_EXT:glycine denotes glycine
T2011 4930-4935 PR_EXT:000005644 denotes Acdp2
T2010 4882-4891 GO:0018032 denotes amidation
T2009 4788-4795 CHEBI_SO_EXT:proline denotes Proline
T2008 4698-4705 CHEBI_SO_EXT:leucine denotes Leucine
T2007 4657-4664 CHEBI_SO_EXT:alanine denotes Alanine
T2006 4639-4644 PR_EXT:000005643 denotes Acdp1
T2005 4189-4193 PR_EXT:ACDP_or_CNNM denotes Acdp
T2004 4164-4170 SO_EXT:0000417 denotes domain
T2003 4156-4163 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T2002 4116-4122 SO_EXT:0000417 denotes domain
T2001 4108-4115 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T2000 4091-4098 SO_EXT:0000417 denotes domains
T1999 4078-4086 CL_GO_EXT:cell denotes cellular
T1998 4073-4086 GO:0005622 denotes intracellular
T1997 4048-4056 CHEBI_PR_EXT:protein denotes proteins
T1996 4030-4040 CHEBI_SO_EXT:N_terminus_or_N_terminal_region denotes N-terminus
T1995 3983-3991 GO:0016020 denotes membrane
T1994 3978-3998 SO_EXT:0001077 denotes transmembrane region
T1879 0-8 SO_EXT:biological_sequence denotes Sequence
T1881 22-31 CHEBI_EXT:polyatomic_entity_or_group denotes molecular
T1882 52-57 NCBITaxon:10088 denotes mouse
T1883 58-62 PR_EXT:ACDP_or_CNNM denotes Acdp
T1884 63-68 SO_EXT:0000704 denotes genes
T1885 88-98 SO:0000857 denotes homologies
T1886 107-117 CHEBI_SO_EXT:nucleotide denotes nucleotide
T1887 122-124 CHEBI_SO_EXT:amino_acid denotes AA
T1888 125-134 SO_EXT:biological_sequence denotes sequences
T1889 142-147 NCBITaxon:9606 denotes human
T1890 148-152 PR_EXT:ACDP_or_CNNM denotes ACDP
T1891 153-158 SO_EXT:0000704 denotes genes
T1892 182-192 SO:0000857 denotes homologies
T1893 219-224 NCBITaxon:9606 denotes human
T1894 225-230 PR_EXT:000005644 denotes ACDP2
T1895 239-244 NCBITaxon:10088 denotes mouse
T1896 245-250 PR_EXT:000005644 denotes Acdp2
T1897 251-255 SO_EXT:0000704 denotes gene
T1898 264-274 CHEBI_SO_EXT:nucleotide denotes nucleotide
T1899 292-294 CHEBI_SO_EXT:amino_acid denotes AA
T1900 317-319 CHEBI_SO_EXT:amino_acid denotes AA
T1901 320-328 SO:0000857 denotes homology
T1902 348-354 SO_EXT:0000204 denotes 5' UTR
T1903 355-365 CHEBI_SO_EXT:nucleotide denotes nucleotide
T1904 366-375 SO_EXT:biological_sequence denotes sequences
T1905 380-382 SO_EXT:0000028 denotes bp
T1906 386-397 CHEBI_SO_EXT:nucleotide denotes nucleotides
T1907 405-416 SO_EXT:0000318 denotes start codon
T1908 435-445 SO:0000857 denotes homologies
T1909 453-458 NCBITaxon:9606 denotes human
T1910 459-467 SO_EXT:0000853 denotes homologs
T1911 486-491 PR_EXT:000005644 denotes Acdp2
T1912 492-498 SO_EXT:0000204 denotes 5' UTR
T1913 499-507 SO_EXT:biological_sequence denotes sequence
T1914 537-542 NCBITaxon:9606 denotes human
T1915 543-550 SO_EXT:0000853 denotes homolog
T1916 565-575 SO:0000857 denotes homologies
T1917 583-589 SO_EXT:0000205 denotes 3' UTR
T1918 590-599 SO_EXT:biological_sequence denotes sequences
T1919 604-606 SO_EXT:0000028 denotes bp
T1920 610-621 CHEBI_SO_EXT:nucleotide denotes nucleotides
T1921 628-638 SO_EXT:0000319 denotes stop codon
T1922 673-677 PR_EXT:ACDP_or_CNNM denotes Acdp
T1923 678-683 SO_EXT:0000704 denotes genes
T1924 691-696 PR_EXT:000005646 denotes Acdp4
T1925 718-723 NCBITaxon:9606 denotes human
T1926 724-731 SO_EXT:0000853 denotes homolog
T1927 746-755 SO_EXT:biological_conservation_process_or_quality denotes conserved
T1928 756-762 SO_EXT:0000417 denotes domain
T1929 782-784 CHEBI_SO_EXT:amino_acid denotes AA
T1930 807-815 SO:0000857 denotes homology
T1931 828-833 NCBITaxon:10088 denotes mouse
T1932 838-843 NCBITaxon:9606 denotes human
T1933 844-848 PR_EXT:ACDP_or_CNNM denotes ACDP
T1934 849-857 CHEBI_PR_EXT:protein denotes proteins
T1935 876-882 SO_EXT:0000417 denotes domain
T6616 1717-1727 CHEBI_SO_EXT:nucleotide denotes Nucleotide
T6617 1732-1742 CHEBI_SO_EXT:amino_acid denotes amino acid
T6618 1743-1753 SO:0000857 denotes homologies
T6619 1766-1771 NCBITaxon:9606 denotes human
T6620 1772-1776 PR_EXT:ACDP_or_CNNM denotes ACDP
T6621 1781-1786 NCBITaxon:10088 denotes mouse
T6622 1787-1791 PR_EXT:ACDP_or_CNNM denotes Acdp
T1989 3833-3840 SO_EXT:0000417 denotes domains
T1880 9-17 SO:0000857 denotes homology
T1936 886-910 SO_EXT:biological_conservation_process_or_quality denotes evolutionarily conserved
T1937 924-931 NCBITaxon:species denotes species
T1938 945-953 NCBITaxon:2 denotes bacteria
T1939 955-960 NCBITaxon_EXT:yeast denotes yeast
T1940 962-972 NCBITaxon:6239 denotes C. elegans
T1941 974-989 NCBITaxon:7227 denotes D. melanogaster
T1942 991-996 NCBITaxon:10088 denotes mouse
T1943 1000-1005 NCBITaxon:9606 denotes human
T1944 1050-1054 PR_EXT:ACDP_or_CNNM denotes Acdp
T1945 1055-1063 CHEBI_PR_EXT:protein denotes proteins
T1946 1083-1085 CHEBI_SO_EXT:amino_acid denotes AA
T1947 1086-1094 SO:0000857 denotes homology
T1948 1098-1106 NCBITaxon:2 denotes bacteria
T1949 1107-1111 PR_EXT:000022321 denotes CorC
T1950 1112-1119 CHEBI_PR_EXT:protein denotes protein
T1951 1125-1127 CHEBI_SO_EXT:amino_acid denotes AA
T1952 1146-1154 SO:0000857 denotes homology
T1953 1178-1187 CHEBI_EXT:magnesium denotes magnesium
T1954 1192-1198 CHEBI_EXT:cobalt denotes cobalt
T1955 1216-1218 CHEBI_SO_EXT:amino_acid denotes AA
T1956 1219-1227 SO:0000857 denotes homology
T1957 1258-1262 PR_EXT:ACDP_or_CNNM denotes Acdp
T1958 1263-1271 CHEBI_PR_EXT:protein denotes proteins
T1959 1280-1285 NCBITaxon_EXT:yeast denotes yeast
T1960 1292-1299 CHEBI_PR_EXT:protein denotes protein
T1961 1305-1307 CHEBI_SO_EXT:amino_acid denotes AA
T1962 1326-1334 SO:0000857 denotes homology
T1963 1365-1375 SO:0000857 denotes homologous
T1964 1383-1391 NCBITaxon:2 denotes bacteria
T1965 1392-1396 PR_EXT:000022321 denotes CorC
T1966 1397-1404 CHEBI_PR_EXT:protein denotes protein
T1967 1416-1423 SO_EXT:sequence_altered_entity denotes mutants
T1968 1445-1451 CHEBI_EXT:copper denotes copper
T1969 1601-1609 CHEBI_PR_EXT:protein denotes proteins
T1970 1674-1676 CHEBI_SO_EXT:amino_acid denotes AA
T1971 1677-1685 SO:0000857 denotes homology
T1972 1689-1697 CHEBI_PR_EXT:protein denotes proteins
T1993 3966-3972 SO_EXT:0000417 denotes domain
T1992 3931-3937 SO_EXT:0000417 denotes domain
T1991 3876-3882 SO_EXT:0000417 denotes domain
T1990 3841-3849 GO:0046983 denotes dimerise
T1988 3811-3818 CHEBI_PR_EXT:protein denotes protein
T1987 3795-3801 SO_EXT:sequence_copy_entity denotes copies
T1986 3752-3759 SO_EXT:0000417 denotes modules
T1985 3743-3751 CL_GO_EXT:cell denotes cellular
T1984 3738-3751 GO:0005622 denotes intracellular
T1983 3720-3727 SO_EXT:0000417 denotes domains
T1982 3706-3714 CHEBI_PR_EXT:protein denotes proteins
T1981 3694-3699 NCBITaxon_EXT:yeast denotes yeast
T1980 3685-3689 PR_EXT:000022321 denotes CorC
T1979 3676-3684 NCBITaxon:2 denotes bacteria
T1978 3651-3657 SO_EXT:0000417 denotes domain
T1977 3631-3638 SO_EXT:0000417 denotes domains
T1976 3605-3612 SO_EXT:0000417 denotes domains
T1975 3596-3604 GO:0016020 denotes membrane
T1974 3556-3560 PR_EXT:ACDP_or_CNNM denotes Acdp
T1973 3550-3555 NCBITaxon:10088 denotes mouse