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PMC:340383 / 362-1311 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T282 0-7 NNS denotes Results
T283 7-208 sentence denotes The four Acdp genes (Acdp1, Acdp2, Acdp3 and Acdp4) contain 3,631 bp, 3,244 bp, 2,684 bp and 2,743 bp of cDNA sequences, and encode deduced proteins of 951, 874, 713 and 771 amino acids, respectively.
T284 8-11 DT denotes The
T285 22-27 NNS denotes genes
T286 12-16 CD denotes four
T287 17-21 NN denotes Acdp
T288 60-67 VBP denotes contain
T289 28-29 -LRB- denotes (
T290 29-34 NN denotes Acdp1
T291 34-36 , denotes ,
T292 36-41 NN denotes Acdp2
T293 41-43 , denotes ,
T294 43-48 NN denotes Acdp3
T295 49-52 CC denotes and
T296 53-58 NN denotes Acdp4
T297 58-59 -RRB- denotes )
T298 68-73 CD denotes 3,631
T299 74-76 NNS denotes bp
T300 76-78 , denotes ,
T301 78-83 CD denotes 3,244
T302 84-86 NNS denotes bp
T303 86-88 , denotes ,
T304 88-93 CD denotes 2,684
T305 94-96 NNS denotes bp
T306 97-100 CC denotes and
T307 101-106 CD denotes 2,743
T308 107-109 NNS denotes bp
T309 110-112 IN denotes of
T310 113-117 NN denotes cDNA
T311 118-127 NNS denotes sequences
T312 127-129 , denotes ,
T313 129-132 CC denotes and
T314 133-139 VBP denotes encode
T315 140-147 VBN denotes deduced
T316 148-156 NN denotes proteins
T317 157-159 IN denotes of
T318 160-163 CD denotes 951
T319 188-193 NNS denotes acids
T320 163-165 , denotes ,
T321 165-168 CD denotes 874
T322 168-170 , denotes ,
T323 170-173 CD denotes 713
T324 174-177 CC denotes and
T325 178-181 CD denotes 771
T326 182-187 NN denotes amino
T327 193-195 , denotes ,
T328 195-207 RB denotes respectively
T329 207-208 . denotes .
T330 208-339 sentence denotes The mouse Acdp genes showed very strong homologies (>90%) in both nucleotide and amino acid sequences to their human counterparts.
T331 209-212 DT denotes The
T332 224-229 NNS denotes genes
T333 213-218 NN denotes mouse
T334 219-223 NN denotes Acdp
T335 230-236 VBD denotes showed
T336 237-241 RB denotes very
T337 242-248 JJ denotes strong
T338 249-259 NNS denotes homologies
T339 260-261 -LRB- denotes (
T340 264-265 NN denotes %
T341 261-262 SYM denotes >
T342 262-264 CD denotes 90
T343 265-266 -RRB- denotes )
T344 267-269 IN denotes in
T345 270-274 CC denotes both
T346 275-285 NN denotes nucleotide
T347 301-310 NNS denotes sequences
T348 286-289 CC denotes and
T349 290-295 NN denotes amino
T350 296-300 NN denotes acid
T351 311-313 IN denotes to
T352 314-319 PRP$ denotes their
T353 326-338 NNS denotes counterparts
T354 320-325 JJ denotes human
T355 338-339 . denotes .
T356 339-493 sentence denotes In addition, both nucleotide and amino acid sequences within the Ancient Conserved Domain (ACD) are highly conserved in many different taxonomic species.
T357 340-342 IN denotes In
T358 447-456 VBN denotes conserved
T359 343-351 NN denotes addition
T360 351-353 , denotes ,
T361 353-357 CC denotes both
T362 358-368 NN denotes nucleotide
T363 384-393 NNS denotes sequences
T364 369-372 CC denotes and
T365 373-378 NN denotes amino
T366 379-383 NN denotes acid
T367 394-400 IN denotes within
T368 401-404 DT denotes the
T369 423-429 NN denotes Domain
T370 405-412 JJ denotes Ancient
T371 413-422 VBN denotes Conserved
T372 430-431 -LRB- denotes (
T373 431-434 NN denotes ACD
T374 434-435 -RRB- denotes )
T375 436-439 VBP denotes are
T376 440-446 RB denotes highly
T377 457-459 IN denotes in
T378 460-464 JJ denotes many
T379 485-492 NNS denotes species
T380 465-474 JJ denotes different
T381 475-484 JJ denotes taxonomic
T382 492-493 . denotes .
T383 493-670 sentence denotes Particularly, Acdp proteins showed very strong AA homologies to the bacteria CorC protein (35% AA identity with 55% homology), which is involved in magnesium and cobalt efflux.
T384 494-506 RB denotes Particularly
T385 522-528 VBD denotes showed
T386 506-508 , denotes ,
T387 508-512 NN denotes Acdp
T388 513-521 NN denotes proteins
T389 529-533 RB denotes very
T390 534-540 JJ denotes strong
T391 544-554 NNS denotes homologies
T392 541-543 NN denotes AA
T393 555-557 IN denotes to
T394 558-561 DT denotes the
T395 576-583 NN denotes protein
T396 562-570 NNS denotes bacteria
T397 571-575 NN denotes CorC
T398 584-585 -LRB- denotes (
T399 592-600 NN denotes identity
T400 585-587 CD denotes 35
T401 587-588 NN denotes %
T402 589-591 NN denotes AA
T403 601-605 IN denotes with
T404 606-608 CD denotes 55
T405 608-609 NN denotes %
T406 610-618 NN denotes homology
T407 618-619 -RRB- denotes )
T408 619-621 , denotes ,
T409 621-626 WDT denotes which
T410 630-638 VBN denotes involved
T411 627-629 VBZ denotes is
T412 639-641 IN denotes in
T413 642-651 NN denotes magnesium
T414 663-669 NN denotes efflux
T415 652-655 CC denotes and
T416 656-662 NN denotes cobalt
T417 669-670 . denotes .
T418 670-842 sentence denotes The Acdp genes are widely expressed in all tissues tested except for Acdp1, which is only highly expressed in the brain with low levels of expression in kidney and testis.
T419 671-674 DT denotes The
T420 680-685 NNS denotes genes
T421 675-679 NN denotes Acdp
T422 697-706 VBN denotes expressed
T423 686-689 VBP denotes are
T424 690-696 RB denotes widely
T425 707-709 IN denotes in
T426 710-713 DT denotes all
T427 714-721 NNS denotes tissues
T428 722-728 VBN denotes tested
T429 729-735 IN denotes except
T430 736-739 IN denotes for
T431 740-745 NN denotes Acdp1
T432 745-747 , denotes ,
T433 747-752 WDT denotes which
T434 768-777 VBN denotes expressed
T435 753-755 VBZ denotes is
T436 756-760 RB denotes only
T437 761-767 RB denotes highly
T438 778-780 IN denotes in
T439 781-784 DT denotes the
T440 785-790 NN denotes brain
T441 791-795 IN denotes with
T442 800-806 NNS denotes levels
T443 796-799 JJ denotes low
T444 807-809 IN denotes of
T445 810-820 NN denotes expression
T446 821-823 IN denotes in
T447 824-830 NN denotes kidney
T448 831-834 CC denotes and
T449 835-841 NN denotes testis
T450 841-842 . denotes .
T451 842-949 sentence denotes Immunostaining of Acdp1 in hippocampus neurons revealed a predominant localization on the plasma membrane.
T452 843-857 NN denotes Immunostaining
T453 890-898 VBD denotes revealed
T454 858-860 IN denotes of
T455 861-866 NN denotes Acdp1
T456 867-869 IN denotes in
T457 870-881 NN denotes hippocampus
T458 882-889 NNS denotes neurons
T459 899-900 DT denotes a
T460 913-925 NN denotes localization
T461 901-912 JJ denotes predominant
T462 926-928 IN denotes on
T463 929-932 DT denotes the
T464 940-948 NN denotes membrane
T465 933-939 NN denotes plasma
T466 948-949 . denotes .
R58 T284 T285 det The,genes
R59 T285 T288 nsubj genes,contain
R60 T286 T285 nummod four,genes
R61 T287 T285 compound Acdp,genes
R62 T289 T285 punct (,genes
R63 T290 T285 appos Acdp1,genes
R64 T291 T290 punct ", ",Acdp1
R65 T292 T290 conj Acdp2,Acdp1
R66 T293 T292 punct ", ",Acdp2
R67 T294 T292 conj Acdp3,Acdp2
R68 T295 T294 cc and,Acdp3
R69 T296 T294 conj Acdp4,Acdp3
R70 T297 T288 punct ),contain
R71 T298 T299 nummod "3,631",bp
R72 T299 T288 dobj bp,contain
R73 T300 T299 punct ", ",bp
R74 T301 T302 nummod "3,244",bp
R75 T302 T299 conj bp,bp
R76 T303 T302 punct ", ",bp
R77 T304 T305 nummod "2,684",bp
R78 T305 T302 conj bp,bp
R79 T306 T305 cc and,bp
R80 T307 T308 nummod "2,743",bp
R81 T308 T305 conj bp,bp
R82 T309 T299 prep of,bp
R83 T310 T311 compound cDNA,sequences
R84 T311 T309 pobj sequences,of
R85 T312 T288 punct ", ",contain
R86 T313 T288 cc and,contain
R87 T314 T288 conj encode,contain
R88 T315 T316 amod deduced,proteins
R89 T316 T314 dobj proteins,encode
R90 T317 T316 prep of,proteins
R91 T318 T319 nummod 951,acids
R92 T319 T317 pobj acids,of
R93 T320 T318 punct ", ",951
R94 T321 T318 conj 874,951
R95 T322 T321 punct ", ",874
R96 T323 T321 conj 713,874
R97 T324 T323 cc and,713
R98 T325 T323 conj 771,713
R99 T326 T319 compound amino,acids
R100 T327 T314 punct ", ",encode
R101 T328 T314 advmod respectively,encode
R102 T329 T288 punct .,contain
R103 T331 T332 det The,genes
R104 T332 T335 nsubj genes,showed
R105 T333 T332 compound mouse,genes
R106 T334 T332 compound Acdp,genes
R107 T336 T337 advmod very,strong
R108 T337 T338 amod strong,homologies
R109 T338 T335 dobj homologies,showed
R110 T339 T340 punct (,%
R111 T340 T338 parataxis %,homologies
R112 T341 T342 punct >,90
R113 T342 T340 nummod 90,%
R114 T343 T340 punct ),%
R115 T344 T338 prep in,homologies
R116 T345 T346 preconj both,nucleotide
R117 T346 T347 nmod nucleotide,sequences
R118 T347 T344 pobj sequences,in
R119 T348 T346 cc and,nucleotide
R120 T349 T350 compound amino,acid
R121 T350 T346 conj acid,nucleotide
R122 T351 T338 prep to,homologies
R123 T352 T353 poss their,counterparts
R125 T354 T353 amod human,counterparts
R126 T355 T335 punct .,showed
R127 T357 T358 prep In,conserved
R128 T359 T357 pobj addition,In
R129 T360 T358 punct ", ",conserved
R130 T361 T362 preconj both,nucleotide
R131 T362 T363 nmod nucleotide,sequences
R132 T363 T358 nsubjpass sequences,conserved
R133 T364 T362 cc and,nucleotide
R134 T365 T366 compound amino,acid
R135 T366 T362 conj acid,nucleotide
R136 T367 T363 prep within,sequences
R137 T368 T369 det the,Domain
R138 T369 T367 pobj Domain,within
R139 T370 T369 amod Ancient,Domain
R140 T371 T369 amod Conserved,Domain
R141 T372 T369 punct (,Domain
R142 T373 T369 appos ACD,Domain
R143 T374 T358 punct ),conserved
R144 T375 T358 auxpass are,conserved
R145 T376 T358 advmod highly,conserved
R146 T377 T358 prep in,conserved
R147 T378 T379 amod many,species
R148 T379 T377 pobj species,in
R149 T380 T379 amod different,species
R150 T381 T379 amod taxonomic,species
R151 T382 T358 punct .,conserved
R152 T384 T385 advmod Particularly,showed
R153 T386 T385 punct ", ",showed
R154 T387 T388 compound Acdp,proteins
R155 T388 T385 nsubj proteins,showed
R156 T389 T390 advmod very,strong
R157 T390 T391 amod strong,homologies
R159 T392 T391 compound AA,homologies
R160 T393 T391 prep to,homologies
R161 T394 T395 det the,protein
R162 T395 T393 pobj protein,to
R163 T396 T395 compound bacteria,protein
R164 T397 T395 compound CorC,protein
R165 T398 T399 punct (,identity
R166 T399 T395 parataxis identity,protein
R167 T400 T401 nummod 35,%
R168 T401 T399 compound %,identity
R169 T402 T399 compound AA,identity
R170 T403 T399 prep with,identity
R171 T404 T405 nummod 55,%
R172 T405 T406 compound %,homology
R173 T406 T403 pobj homology,with
R174 T407 T399 punct ),identity
R175 T408 T395 punct ", ",protein
R176 T409 T410 dep which,involved
R178 T411 T410 auxpass is,involved
R179 T412 T410 prep in,involved
R180 T413 T414 nmod magnesium,efflux
R181 T414 T412 pobj efflux,in
R182 T415 T413 cc and,magnesium
R183 T416 T413 conj cobalt,magnesium
R184 T417 T385 punct .,showed
R185 T419 T420 det The,genes
R187 T421 T420 compound Acdp,genes
R188 T423 T422 auxpass are,expressed
R189 T424 T422 advmod widely,expressed
R190 T425 T422 prep in,expressed
R191 T426 T427 det all,tissues
R192 T427 T425 pobj tissues,in
R193 T428 T427 acl tested,tissues
R194 T429 T422 prep except,expressed
R195 T430 T429 prep for,except
R196 T431 T430 pobj Acdp1,for
R197 T432 T431 punct ", ",Acdp1
R198 T433 T434 dep which,expressed
R199 T434 T431 relcl expressed,Acdp1
R200 T435 T434 auxpass is,expressed
R201 T436 T434 advmod only,expressed
R202 T437 T434 advmod highly,expressed
R203 T438 T434 prep in,expressed
R204 T439 T440 det the,brain
R205 T440 T438 pobj brain,in
R206 T441 T442 mark with,levels
R208 T443 T442 amod low,levels
R209 T444 T442 prep of,levels
R210 T445 T444 pobj expression,of
R211 T446 T442 prep in,levels
R212 T447 T446 pobj kidney,in
R213 T448 T447 cc and,kidney
R214 T449 T447 conj testis,kidney
R215 T450 T422 punct .,expressed
R216 T452 T453 nsubj Immunostaining,revealed
R217 T454 T452 prep of,Immunostaining
R218 T455 T454 pobj Acdp1,of
R219 T456 T455 prep in,Acdp1
R220 T457 T458 compound hippocampus,neurons
R221 T458 T456 pobj neurons,in
R222 T459 T460 det a,localization
R224 T461 T460 amod predominant,localization
R225 T462 T453 prep on,revealed
R226 T463 T464 det the,membrane
R228 T465 T464 compound plasma,membrane
R229 T466 T453 punct .,revealed
R124 T353 T351 pobj counterparts,to
R158 T391 T385 dobj homologies,showed
R177 T410 T395 relcl involved,protein
R186 T420 T422 nsubjpass genes,expressed
R207 T442 T434 advcl levels,expressed
R223 T460 T453 dobj localization,revealed
R227 T464 T462 pobj membrane,on

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T69 22-27 SO:0000704 denotes genes
T70 29-34 PR:000005643 denotes Acdp1
T71 36-41 PR:000005644 denotes Acdp2
T72 43-48 PR:000005645 denotes Acdp3
T73 53-58 PR:000005646 denotes Acdp4
T74 74-76 SO:0000028 denotes bp
T75 84-86 SO:0000028 denotes bp
T76 94-96 SO:0000028 denotes bp
T77 107-109 SO:0000028 denotes bp
T78 213-218 NCBITaxon:10088 denotes mouse
T79 224-229 SO:0000704 denotes genes
T80 249-259 SO:0000857 denotes homologies
T81 320-325 NCBITaxon:9606 denotes human
T82 423-429 SO:0000417 denotes Domain
T83 475-492 NCBITaxon:species denotes taxonomic species
T84 544-554 SO:0000857 denotes homologies
T85 562-570 NCBITaxon:2 denotes bacteria
T86 571-575 PR:000022321 denotes CorC
T87 610-618 SO:0000857 denotes homology
T88 680-685 SO:0000704 denotes genes
T89 697-706 GO:0010467 denotes expressed
T90 714-721 UBERON:0000479 denotes tissues
T91 740-745 PR:000005643 denotes Acdp1
T92 768-777 GO:0010467 denotes expressed
T93 785-790 UBERON:0000955 denotes brain
T94 810-820 GO:0010467 denotes expression
T95 824-830 UBERON:0002113 denotes kidney
T96 835-841 UBERON:0000473 denotes testis
T97 861-866 PR:000005643 denotes Acdp1
T98 870-889 CL:0002608 denotes hippocampus neurons
T99 933-948 GO:0005886 denotes plasma membrane

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T136 17-21 PR_EXT:ACDP_or_CNNM denotes Acdp
T137 22-27 SO_EXT:0000704 denotes genes
T138 29-34 PR_EXT:000005643 denotes Acdp1
T139 36-41 PR_EXT:000005644 denotes Acdp2
T140 43-48 PR_EXT:000005645 denotes Acdp3
T141 53-58 PR_EXT:000005646 denotes Acdp4
T142 74-76 SO_EXT:0000028 denotes bp
T143 84-86 SO_EXT:0000028 denotes bp
T144 94-96 SO_EXT:0000028 denotes bp
T145 107-109 SO_EXT:0000028 denotes bp
T146 113-117 SO_EXT:cDNA denotes cDNA
T147 118-127 SO_EXT:biological_sequence denotes sequences
T148 133-139 SO_EXT:sequence_coding_function denotes encode
T149 148-156 CHEBI_PR_EXT:protein denotes proteins
T150 182-193 CHEBI_SO_EXT:amino_acid denotes amino acids
T151 213-218 NCBITaxon:10088 denotes mouse
T152 219-223 PR_EXT:ACDP_or_CNNM denotes Acdp
T153 224-229 SO_EXT:0000704 denotes genes
T154 249-259 SO:0000857 denotes homologies
T155 275-285 CHEBI_SO_EXT:nucleotide denotes nucleotide
T156 290-300 CHEBI_SO_EXT:amino_acid denotes amino acid
T157 301-310 SO_EXT:biological_sequence denotes sequences
T158 320-325 NCBITaxon:9606 denotes human
T159 358-368 CHEBI_SO_EXT:nucleotide denotes nucleotide
T160 373-383 CHEBI_SO_EXT:amino_acid denotes amino acid
T161 384-393 SO_EXT:biological_sequence denotes sequences
T162 413-422 SO_EXT:biological_conservation_process_or_quality denotes Conserved
T163 423-429 SO_EXT:0000417 denotes Domain
T164 447-456 SO_EXT:biological_conservation_process_or_quality denotes conserved
T165 475-492 NCBITaxon:species denotes taxonomic species
T166 508-512 PR_EXT:ACDP_or_CNNM denotes Acdp
T167 513-521 CHEBI_PR_EXT:protein denotes proteins
T168 541-543 CHEBI_SO_EXT:amino_acid denotes AA
T169 544-554 SO:0000857 denotes homologies
T170 562-570 NCBITaxon:2 denotes bacteria
T171 571-575 PR_EXT:000022321 denotes CorC
T172 576-583 CHEBI_PR_EXT:protein denotes protein
T173 589-591 CHEBI_SO_EXT:amino_acid denotes AA
T174 610-618 SO:0000857 denotes homology
T175 642-651 CHEBI_EXT:magnesium denotes magnesium
T176 656-662 CHEBI_EXT:cobalt denotes cobalt
T177 675-679 PR_EXT:ACDP_or_CNNM denotes Acdp
T178 680-685 SO_EXT:0000704 denotes genes
T179 697-706 GO:0010467 denotes expressed
T180 714-721 UBERON:0000479 denotes tissues
T181 740-745 PR_EXT:000005643 denotes Acdp1
T182 768-777 GO:0010467 denotes expressed
T183 785-790 UBERON:0000955 denotes brain
T184 810-820 GO:0010467 denotes expression
T185 824-830 UBERON:0002113 denotes kidney
T186 835-841 UBERON:0000473 denotes testis
T187 861-866 PR_EXT:000005643 denotes Acdp1
T188 870-881 UBERON_EXT:hippocampus_proper_or_hippocampal_formation denotes hippocampus
T189 870-889 CL:0002608 denotes hippocampus neurons
T190 913-925 GO_PATO_EXT:biological_localization_process_or_quality denotes localization
T191 933-948 GO:0005886 denotes plasma membrane