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PMC:340383 / 20558-21148 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T5100 450-454 NN denotes tree
T5099 437-449 JJ denotes Phylogenetic
T5098 436-590 sentence denotes Phylogenetic tree was constructed by Clustalw program (version 1.81) using UPGMA (Unweighted Pair Group Method using Arithmetic averages) algorithm [14].
T5097 435-436 . denotes .
T5096 428-435 NN denotes protein
T5095 422-427 JJ denotes known
T5094 419-421 IN denotes of
T5093 410-418 NNS denotes features
T5092 401-409 NN denotes sequence
T5091 391-400 VBG denotes searching
T5090 387-390 IN denotes for
T5089 377-381 VBD denotes were
T5088 369-375 NN denotes 3Dpssm
T5087 365-368 CC denotes and
T5086 357-363 NN denotes ExPASy
T5085 355-357 , denotes ,
T5084 342-347 NN denotes motif
T5083 348-354 NN denotes search
T5082 333-341 NN denotes sequence
T5081 331-333 , denotes ,
T5080 319-330 NN denotes ProfileScan
T5079 317-319 , denotes ,
T5078 301-307 NN denotes Search
T5077 308-316 NN denotes Launcher
T5076 297-300 NN denotes BCM
T5075 287-296 VBG denotes including
T5074 382-386 VBN denotes used
T5073 278-286 NNS denotes programs
T5072 269-277 JJ denotes Multiple
T5071 268-436 sentence denotes Multiple programs including BCM Search Launcher , ProfileScan , sequence motif search , ExPASy and 3Dpssm were used for searching sequence features of known protein.
T5070 267-268 . denotes .
T5069 248-256 NN denotes sequence
T5068 239-247 JJ denotes pairwise
T5067 235-238 CC denotes and
T5066 257-266 NN denotes alignment
T5065 227-234 NN denotes GeneDoc
T5064 222-226 IN denotes with
T5063 207-211 VBD denotes were
T5062 212-221 VBN denotes performed
T5061 187-195 NN denotes sequence
T5060 196-206 NNS denotes alignments
T5059 178-186 JJ denotes Multiple
T5058 177-268 sentence denotes Multiple sequence alignments were performed with GeneDoc and pairwise sequence alignment .
T5057 176-177 . denotes .
T5056 160-166 NN denotes blastn
T5055 156-159 CC denotes and
T5054 149-155 NN denotes blastp
T5053 147-149 , denotes ,
T5052 140-147 NN denotes tblastx
T5051 138-140 , denotes ,
T5050 167-175 NNS denotes programs
T5049 131-138 NN denotes tblastn
T5048 126-130 IN denotes with
T5047 122-125 RP denotes out
T5046 109-113 VBD denotes were
T5045 114-121 VBN denotes carried
T5044 100-108 NNS denotes searches
T5043 87-90 NN denotes DNA
T5042 83-86 CC denotes and
T5041 91-99 NN denotes homology
T5040 75-82 NN denotes Protein
T5039 74-177 sentence denotes Protein and DNA homology searches were carried out with tblastn, tblastx, blastp and blastn programs .
T5038 73-74 . denotes .
T5037 72-73 -RRB- denotes )
T5036 62-67 NNPS denotes Codes
T5035 57-61 NNP denotes Gene
T5034 68-72 NNP denotes Corp
T5033 56-57 -LRB- denotes (
T5032 45-55 NN denotes Sequencher
T5031 37-44 NN denotes program
T5030 32-36 IN denotes with
T5029 18-21 VBD denotes was
T5028 22-31 VBN denotes performed
T5027 9-17 NN denotes assembly
T5026 0-8 NN denotes Sequence
T5125 589-590 . denotes .
T5124 588-589 -RRB- denotes ]
T5123 586-588 CD denotes 14
T5122 585-586 -LRB- denotes [
T5121 573-574 -RRB- denotes )
T5120 565-573 NNS denotes averages
T5119 554-564 NN denotes Arithmetic
T5118 548-553 VBG denotes using
T5117 535-540 NN denotes Group
T5116 530-534 NN denotes Pair
T5115 541-547 NN denotes Method
T5114 519-529 JJ denotes Unweighted
T5113 518-519 -LRB- denotes (
T5112 575-584 NN denotes algorithm
T5111 512-517 NN denotes UPGMA
T5110 506-511 VBG denotes using
T5109 504-505 -RRB- denotes )
T5108 500-504 CD denotes 1.81
T5107 492-499 NN denotes version
T5106 491-492 -LRB- denotes (
T5105 483-490 NN denotes program
T5104 474-482 NN denotes Clustalw
T5103 471-473 IN denotes by
T5102 455-458 VBD denotes was
T5101 459-470 VBN denotes constructed
R3050 T5026 T5027 compound Sequence,assembly
R3051 T5027 T5028 nsubjpass assembly,performed
R3052 T5029 T5028 auxpass was,performed
R3053 T5030 T5028 prep with,performed
R3054 T5031 T5032 compound program,Sequencher
R3055 T5032 T5030 pobj Sequencher,with
R3056 T5033 T5034 punct (,Corp
R3057 T5034 T5032 parataxis Corp,Sequencher
R3058 T5035 T5034 compound Gene,Corp
R3059 T5036 T5034 compound Codes,Corp
R3060 T5037 T5034 punct ),Corp
R3061 T5038 T5028 punct .,performed
R3062 T5040 T5041 nmod Protein,homology
R3063 T5041 T5044 compound homology,searches
R3064 T5042 T5040 cc and,Protein
R3065 T5043 T5040 conj DNA,Protein
R3066 T5044 T5045 nsubjpass searches,carried
R3067 T5046 T5045 auxpass were,carried
R3068 T5047 T5045 prt out,carried
R3069 T5048 T5045 prep with,carried
R3070 T5049 T5050 nmod tblastn,programs
R3071 T5050 T5048 pobj programs,with
R3072 T5051 T5049 punct ", ",tblastn
R3073 T5052 T5049 conj tblastx,tblastn
R3074 T5053 T5052 punct ", ",tblastx
R3075 T5054 T5052 conj blastp,tblastx
R3076 T5055 T5054 cc and,blastp
R3077 T5056 T5054 conj blastn,blastp
R3078 T5057 T5045 punct .,carried
R3079 T5059 T5060 amod Multiple,alignments
R3080 T5060 T5062 nsubjpass alignments,performed
R3081 T5061 T5060 compound sequence,alignments
R3082 T5063 T5062 auxpass were,performed
R3083 T5064 T5062 prep with,performed
R3084 T5065 T5066 nmod GeneDoc,alignment
R3085 T5066 T5064 pobj alignment,with
R3086 T5067 T5065 cc and,GeneDoc
R3087 T5068 T5065 conj pairwise,GeneDoc
R3088 T5069 T5066 compound sequence,alignment
R3089 T5070 T5062 punct .,performed
R3090 T5072 T5073 amod Multiple,programs
R3091 T5073 T5074 nsubjpass programs,used
R3092 T5075 T5073 prep including,programs
R3093 T5076 T5077 compound BCM,Launcher
R3094 T5077 T5075 pobj Launcher,including
R3095 T5078 T5077 compound Search,Launcher
R3096 T5079 T5077 punct ", ",Launcher
R3097 T5080 T5077 conj ProfileScan,Launcher
R3098 T5081 T5080 punct ", ",ProfileScan
R3099 T5082 T5083 compound sequence,search
R3100 T5083 T5080 conj search,ProfileScan
R3101 T5084 T5083 compound motif,search
R3102 T5085 T5083 punct ", ",search
R3103 T5086 T5083 conj ExPASy,search
R3104 T5087 T5086 cc and,ExPASy
R3105 T5088 T5086 conj 3Dpssm,ExPASy
R3106 T5089 T5074 auxpass were,used
R3107 T5090 T5074 prep for,used
R3108 T5091 T5090 pcomp searching,for
R3109 T5092 T5093 compound sequence,features
R3110 T5093 T5091 dobj features,searching
R3111 T5094 T5093 prep of,features
R3112 T5095 T5096 amod known,protein
R3113 T5096 T5094 pobj protein,of
R3114 T5097 T5074 punct .,used
R3115 T5099 T5100 amod Phylogenetic,tree
R3116 T5100 T5101 nsubjpass tree,constructed
R3117 T5102 T5101 auxpass was,constructed
R3118 T5103 T5101 agent by,constructed
R3119 T5104 T5105 compound Clustalw,program
R3120 T5105 T5103 pobj program,by
R3121 T5106 T5107 punct (,version
R3122 T5107 T5105 parataxis version,program
R3123 T5108 T5107 nummod 1.81,version
R3124 T5109 T5107 punct ),version
R3125 T5110 T5101 advcl using,constructed
R3126 T5111 T5112 nmod UPGMA,algorithm
R3127 T5112 T5110 dobj algorithm,using
R3128 T5113 T5111 punct (,UPGMA
R3129 T5114 T5115 amod Unweighted,Method
R3130 T5115 T5111 appos Method,UPGMA
R3131 T5116 T5115 compound Pair,Method
R3132 T5117 T5115 compound Group,Method
R3133 T5118 T5115 acl using,Method
R3134 T5119 T5120 compound Arithmetic,averages
R3135 T5120 T5118 dobj averages,using
R3136 T5121 T5112 punct ),algorithm
R3137 T5122 T5123 punct [,14
R3138 T5123 T5101 parataxis 14,constructed
R3139 T5124 T5123 punct ],14
R3140 T5125 T5101 punct .,constructed

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5009 401-418 SO:0000110 denotes sequence features
T5008 91-99 SO:0000857 denotes homology
T5007 57-61 SO:0000704 denotes Gene

2_test

Id Subject Object Predicate Lexical cue
14723793-7984417-10642199 586-588 7984417 denotes 14

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5022 428-435 CHEBI_PR_EXT:protein denotes protein
T5021 401-418 SO_EXT:0000110 denotes sequence features
T5020 342-347 SO_EXT:sequence_or_structure_motif denotes motif
T5019 333-341 SO_EXT:biological_sequence denotes sequence
T5018 248-256 SO_EXT:biological_sequence denotes sequence
T5017 187-195 SO_EXT:biological_sequence denotes sequence
T5016 91-99 SO:0000857 denotes homology
T5015 87-90 CHEBI_SO_EXT:DNA denotes DNA
T5014 75-82 CHEBI_PR_EXT:protein denotes Protein
T5013 57-61 SO_EXT:0000704 denotes Gene
T5012 9-17 SO_EXT:sequence_assembly_entity_or_process denotes assembly
T5011 0-8 SO_EXT:biological_sequence denotes Sequence