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PMC:3359311 / 3651-3978 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1647 4-9 P01584 denotes IL-1β
T1648 256-261 P01584 denotes IL-1β

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2528 256-261 Protein denotes IL-1β
T2529 266-275 Protein denotes pro-IL-18
T2530 317-326 Localization denotes secretion
T2531 317-326 Localization denotes secretion
R2192 T2528 T2530 themeOf IL-1β,secretion
R2193 T2529 T2531 themeOf pro-IL-18,secretion

GO-CC

Id Subject Object Predicate Lexical cue
T2433 70-87 http://purl.obolibrary.org/obo/GO_0043234 denotes protein complexes

GO-MF

Id Subject Object Predicate Lexical cue
T2418 270-275 http://purl.obolibrary.org/obo/GO_0045515 denotes IL-18

GO-BP

Id Subject Object Predicate Lexical cue
T2407 158-166 http://purl.obolibrary.org/obo/GO_0007349 denotes cellular
T2408 203-224 http://purl.obolibrary.org/obo/GO_0006919 denotes activation of caspase
T2409 317-326 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1956 0-9 NNP denotes Pro-IL-1β
T1957 10-12 VBZ denotes is
T1958 13-25 RB denotes subsequently
T1959 26-35 VBN denotes converted
T1960 36-40 IN denotes into
T1961 41-44 PRP$ denotes its
T1962 45-51 JJ denotes active
T1963 52-56 NN denotes form
T1964 57-59 IN denotes by
T1965 60-69 JJ denotes cytosolic
T1966 70-77 NN denotes protein
T1967 78-87 NNS denotes complexes
T1968 88-94 VBD denotes termed
T1969 96-109 NNS denotes inflammasomes
T1970 109-110 . denotes .
T1971 112-125 NNS denotes Inflammasomes
T1972 126-134 VBP denotes assemble
T1973 135-137 IN denotes in
T1974 138-146 NN denotes response
T1975 147-149 TO denotes to
T1976 150-157 JJ denotes certain
T1977 158-166 JJ denotes cellular
T1978 167-173 NN denotes danger
T1979 174-181 NNS denotes signals
T1980 182-185 CC denotes and
T1981 186-193 VB denotes mediate
T1982 194-197 DT denotes the
T1983 198-213 NN denotes auto-activation
T1984 214-216 IN denotes of
T1985 217-226 JJ denotes caspase-1
T1986 227-228 NN denotes [
T1987 228-229 CD denotes 9
T1988 229-230 NNP denotes ]
T1989 230-231 , denotes ,
T1990 232-233 NNP denotes [
T1991 233-235 CD denotes 11
T1992 235-236 NNP denotes ]
T1993 236-237 , denotes ,
T1994 238-243 WDT denotes which
T1995 244-251 VBZ denotes cleaves
T1996 252-261 NN denotes pro-IL-1β
T1997 262-265 CC denotes and
T1998 266-275 NN denotes pro-IL-18
T1999 276-280 IN denotes into
T2000 281-286 PRP$ denotes their
T2001 287-299 RB denotes biologically
T2002 300-306 JJ denotes active
T2003 307-312 NNS denotes forms
T2004 313-316 IN denotes for
T2005 317-326 NN denotes secretion
T2006 326-327 . denotes .
R1642 T1956 T1959 nsubjpass Pro-IL-1β,converted
R1644 T1957 T1959 auxpass is,converted
R1646 T1958 T1959 advmod subsequently,converted
R1651 T1959 T1959 ROOT converted,converted
R1659 T1960 T1959 prep into,converted
R1663 T1961 T1963 poss its,form
R1667 T1962 T1963 amod active,form
R1669 T1963 T1960 pobj form,into
R1674 T1964 T1959 agent by,converted
R1677 T1965 T1967 amod cytosolic,complexes
R1681 T1966 T1967 compound protein,complexes
R1684 T1967 T1964 pobj complexes,by
R1687 T1968 T1968 ROOT termed,termed
R1688 T1969 T1968 oprd inflammasomes,termed
R1691 T1970 T1959 punct .,converted
R1694 T1971 T1972 nsubj Inflammasomes,assemble
R1697 T1972 T1972 ROOT assemble,assemble
R1700 T1973 T1972 prep in,assemble
R1705 T1974 T1973 pobj response,in
R1708 T1975 T1974 prep to,response
R1711 T1976 T1979 amod certain,signals
R1715 T1977 T1978 amod cellular,danger
R1718 T1978 T1979 compound danger,signals
R1721 T1979 T1975 pobj signals,to
R1725 T1980 T1972 cc and,assemble
R1728 T1981 T1972 conj mediate,assemble
R1734 T1982 T1983 det the,auto-activation
R1737 T1983 T1981 dobj auto-activation,mediate
R1741 T1984 T1983 prep of,auto-activation
R1744 T1985 T1986 amod caspase-1,[
R1749 T1986 T1988 nmod [,]
R1752 T1987 T1986 nummod 9,[
R1759 T1988 T1984 pobj ],of
R1763 T1989 T1988 punct ",",]
R1764 T1990 T1992 compound [,]
R1765 T1991 T1992 compound 11,]
R1766 T1992 T1983 appos ],auto-activation
R1767 T1993 T1992 punct ",",]
R1768 T1994 T1995 nsubj which,cleaves
R1771 T1995 T1992 relcl cleaves,]
R1775 T1996 T1995 dobj pro-IL-1β,cleaves
R1778 T1997 T1996 cc and,pro-IL-1β
R1781 T1998 T1996 conj pro-IL-18,pro-IL-1β
R1785 T1999 T1995 prep into,cleaves
R1789 T2000 T2003 poss their,forms
R1793 T2001 T2002 advmod biologically,active
R1794 T2002 T2003 amod active,forms
R1796 T2003 T1999 pobj forms,into
R1797 T2004 T2003 prep for,forms
R1799 T2005 T2004 pobj secretion,for
R1802 T2006 T1972 punct .,assemble

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1240 0-9 NN denotes Pro-IL-1β
T1241 10-12 VB denotes is
T1242 13-25 RB denotes subsequently
T1243 26-35 VB denotes converted
T1244 36-40 IN denotes into
T1245 41-44 PRP-DOLLAR- denotes its
T1246 45-51 JJ denotes active
T1247 52-56 NN denotes form
T1248 57-59 IN denotes by
T1249 60-69 JJ denotes cytosolic
T1250 70-77 NN denotes protein
T1251 78-87 NN denotes complexes
T1252 88-94 VB denotes termed
T1253 95-111 NN denotes “inflammasomes.”
T1254 112-125 NN denotes Inflammasomes
T1255 126-134 NN denotes assemble
T1256 135-137 IN denotes in
T1257 138-146 NN denotes response
T1258 147-149 TO denotes to
T1259 150-157 JJ denotes certain
T1260 158-166 JJ denotes cellular
T1261 167-173 NN denotes danger
T1262 174-181 NN denotes signals
T1263 182-185 CC denotes and
T1264 186-193 VB denotes mediate
T1265 194-197 DT denotes the
T1266 198-213 NN denotes auto-activation
T1267 214-216 IN denotes of
T1268 217-226 NN denotes caspase-1
T1269 227-228 -LRB- denotes [
T1270 228-229 CD denotes 9
T1271 229-230 -RRB- denotes ]
T1272 230-231 -COMMA- denotes ,
T1273 232-233 -LRB- denotes [
T1274 233-235 CD denotes 11
T1275 235-236 -RRB- denotes ]
T1276 236-237 -COMMA- denotes ,
T1277 238-243 WDT denotes which
T1278 244-251 VB denotes cleaves
T1279 252-261 NN denotes pro-IL-1β
T1280 262-265 CC denotes and
T1281 266-275 NN denotes pro-IL-18
T1282 276-280 IN denotes into
T1283 281-286 PRP-DOLLAR- denotes their
T1284 287-299 RB denotes biologically
T1285 300-306 JJ denotes active
T1286 307-312 NN denotes forms
T1287 313-316 IN denotes for
T1288 317-326 NN denotes secretion
R1029 T1240 T1241 arg1Of Pro-IL-1β,is
R1030 T1240 T1243 arg2Of Pro-IL-1β,converted
R1031 T1240 T1264 arg1Of Pro-IL-1β,mediate
R1032 T1243 T1241 arg2Of converted,is
R1033 T1243 T1242 arg1Of converted,subsequently
R1034 T1243 T1244 arg1Of converted,into
R1035 T1243 T1263 arg1Of converted,and
R1036 T1247 T1244 arg2Of form,into
R1037 T1247 T1245 arg1Of form,its
R1038 T1247 T1246 arg1Of form,active
R1039 T1251 T1243 arg1Of complexes,converted
R1040 T1251 T1248 arg2Of complexes,by
R1041 T1251 T1249 arg1Of complexes,cytosolic
R1042 T1251 T1250 arg1Of complexes,protein
R1043 T1251 T1252 arg2Of complexes,termed
R1044 T1252 T1256 arg1Of termed,in
R1045 T1255 T1252 arg3Of assemble,termed
R1046 T1255 T1253 arg1Of assemble,“inflammasomes.”
R1047 T1255 T1254 arg1Of assemble,Inflammasomes
R1048 T1257 T1256 arg2Of response,in
R1049 T1257 T1258 arg1Of response,to
R1050 T1262 T1258 arg2Of signals,to
R1051 T1262 T1259 arg1Of signals,certain
R1052 T1262 T1260 arg1Of signals,cellular
R1053 T1262 T1261 arg1Of signals,danger
R1054 T1264 T1263 arg2Of mediate,and
R1055 T1266 T1264 arg2Of auto-activation,mediate
R1056 T1266 T1265 arg1Of auto-activation,the
R1057 T1266 T1267 arg1Of auto-activation,of
R1058 T1266 T1273 arg1Of auto-activation,[
R1059 T1266 T1276 arg1Of auto-activation,","
R1060 T1266 T1277 arg1Of auto-activation,which
R1061 T1266 T1278 arg1Of auto-activation,cleaves
R1062 T1268 T1267 arg2Of caspase-1,of
R1063 T1268 T1269 arg1Of caspase-1,[
R1064 T1268 T1272 arg1Of caspase-1,","
R1065 T1270 T1269 arg2Of 9,[
R1066 T1271 T1269 arg3Of ],[
R1067 T1274 T1273 arg2Of 11,[
R1068 T1275 T1273 arg3Of ],[
R1069 T1279 T1280 arg1Of pro-IL-1β,and
R1070 T1280 T1278 arg2Of and,cleaves
R1071 T1280 T1282 arg1Of and,into
R1072 T1281 T1280 arg2Of pro-IL-18,and
R1073 T1285 T1284 arg1Of active,biologically
R1074 T1286 T1282 arg2Of forms,into
R1075 T1286 T1283 arg1Of forms,their
R1076 T1286 T1285 arg1Of forms,active
R1077 T1286 T1287 arg1Of forms,for
R1078 T1288 T1287 arg2Of secretion,for

sentences

Id Subject Object Predicate Lexical cue
T940 0-327 Sentence denotes Pro-IL-1β is subsequently converted into its active form by cytosolic protein complexes termed “inflammasomes.” Inflammasomes assemble in response to certain cellular danger signals and mediate the auto-activation of caspase-1 [9], [11], which cleaves pro-IL-1β and pro-IL-18 into their biologically active forms for secretion.
T30 0-327 Sentence denotes Pro-IL-1β is subsequently converted into its active form by cytosolic protein complexes termed “inflammasomes.” Inflammasomes assemble in response to certain cellular danger signals and mediate the auto-activation of caspase-1 [9], [11], which cleaves pro-IL-1β and pro-IL-18 into their biologically active forms for secretion.

2_test

Id Subject Object Predicate Lexical cue
22649552-21350580-88306679 233-235 21350580 denotes 11
T31735 233-235 21350580 denotes 11