PMC:3359311 / 32752-33166
Annnotations
test2
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12138 | 204-224 | Protein | denotes | alkaline phosphatase |
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12207 | 6-10 | P05412 | denotes | AP-1 |
T12208 | 260-264 | P05412 | denotes | AP-1 |
bionlp-st-ge-2016-reference
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12139 | 204-224 | Protein | denotes | alkaline phosphatase |
bionlp-st-ge-2016-reference-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12293 | 0-5 | Protein | denotes | NF-κB |
T12294 | 6-10 | Protein | denotes | AP-1 |
T12295 | 204-224 | Protein | denotes | alkaline phosphatase |
T12296 | 254-259 | Protein | denotes | NF-κB |
T12297 | 260-264 | Protein | denotes | AP-1 |
events-check-again
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12292 | 204-224 | Protein | denotes | alkaline phosphatase |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12289 | 59-64 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
GO-MF
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12288 | 213-224 | http://purl.obolibrary.org/obo/GO_0016791 | denotes | phosphatase |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12287 | 213-224 | http://purl.obolibrary.org/obo/GO_0016791 | denotes | phosphatase |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12209 | 0-5 | NNP | denotes | NF-κB |
T12210 | 5-6 | NNP | denotes | / |
T12211 | 6-10 | NNP | denotes | AP-1 |
T12212 | 11-19 | NNP | denotes | Activity |
T12213 | 20-25 | NNP | denotes | Assay |
T12214 | 26-38 | NNPS | denotes | Supernatants |
T12215 | 39-43 | IN | denotes | from |
T12216 | 44-49 | CD | denotes | THP-1 |
T12217 | 50-58 | NN | denotes | reporter |
T12218 | 59-64 | NNS | denotes | cells |
T12219 | 65-69 | VBD | denotes | were |
T12220 | 70-79 | VBN | denotes | incubated |
T12221 | 80-84 | IN | denotes | with |
T12222 | 85-96 | JJ | denotes | Quanti-Blue |
T12223 | 97-106 | NN | denotes | substrate |
T12224 | 107-108 | -LRB- | denotes | ( |
T12225 | 108-117 | NNP | denotes | Invivogen |
T12226 | 117-118 | -RRB- | denotes | ) |
T12227 | 119-121 | IN | denotes | at |
T12228 | 122-124 | CD | denotes | 37 |
T12229 | 124-125 | CD | denotes | ° |
T12230 | 125-126 | NNP | denotes | C |
T12231 | 127-130 | CC | denotes | and |
T12232 | 131-138 | VBN | denotes | allowed |
T12233 | 139-141 | TO | denotes | to |
T12234 | 142-149 | VB | denotes | develop |
T12235 | 150-153 | IN | denotes | for |
T12236 | 154-156 | CD | denotes | 16 |
T12237 | 157-159 | CD | denotes | 18 |
T12238 | 160-165 | NNS | denotes | hours |
T12239 | 165-166 | . | denotes | . |
T12240 | 167-178 | JJ | denotes | Quanti-Blue |
T12241 | 179-187 | VBZ | denotes | contains |
T12242 | 188-189 | DT | denotes | a |
T12243 | 190-199 | NN | denotes | substrate |
T12244 | 200-203 | IN | denotes | for |
T12245 | 204-212 | JJ | denotes | alkaline |
T12246 | 213-224 | NN | denotes | phosphatase |
T12247 | 225-228 | CC | denotes | and |
T12248 | 229-236 | NNS | denotes | changes |
T12249 | 237-239 | IN | denotes | in |
T12250 | 240-243 | DT | denotes | the |
T12251 | 244-250 | NN | denotes | amount |
T12252 | 251-253 | IN | denotes | of |
T12253 | 254-259 | NNP | denotes | NF-κB |
T12254 | 259-260 | NNP | denotes | / |
T12255 | 260-264 | NNP | denotes | AP-1 |
T12256 | 265-273 | NN | denotes | activity |
T12257 | 274-278 | VBD | denotes | were |
T12258 | 279-289 | VBN | denotes | quantified |
T12259 | 290-292 | IN | denotes | by |
T12260 | 293-300 | JJ | denotes | optical |
T12261 | 301-308 | NN | denotes | density |
T12262 | 309-310 | -LRB- | denotes | ( |
T12263 | 310-311 | FW | denotes | λ |
T12264 | 312-313 | SYM | denotes | = |
T12265 | 314-317 | CD | denotes | 655 |
T12266 | 317-318 | -RRB- | denotes | ) |
T12267 | 319-327 | VBN | denotes | measured |
T12268 | 328-333 | VBG | denotes | using |
T12269 | 334-335 | DT | denotes | a |
T12270 | 336-346 | NNP | denotes | SpectraMax |
T12271 | 347-350 | CD | denotes | 384 |
T12272 | 351-355 | NNP | denotes | Plus |
T12273 | 356-361 | NN | denotes | plate |
T12274 | 362-368 | NN | denotes | reader |
T12275 | 369-372 | CC | denotes | and |
T12276 | 373-380 | NNP | denotes | SoftMax |
T12277 | 381-384 | FW | denotes | Pro |
T12278 | 385-393 | NN | denotes | software |
T12279 | 394-395 | -LRB- | denotes | ( |
T12280 | 395-404 | JJ | denotes | Molecular |
T12281 | 405-412 | NNPS | denotes | Devices |
T12282 | 412-413 | -RRB- | denotes | ) |
T12283 | 413-414 | . | denotes | . |
R10809 | T12209 | T12214 | compound | NF-κB,Supernatants |
R10810 | T12210 | T12214 | compound | /,Supernatants |
R10811 | T12211 | T12214 | compound | AP-1,Supernatants |
R10812 | T12212 | T12214 | compound | Activity,Supernatants |
R10813 | T12213 | T12214 | compound | Assay,Supernatants |
R10814 | T12214 | T12220 | nsubjpass | Supernatants,incubated |
R10815 | T12215 | T12214 | prep | from,Supernatants |
R10816 | T12216 | T12218 | nummod | THP-1,cells |
R10817 | T12217 | T12218 | compound | reporter,cells |
R10818 | T12218 | T12215 | pobj | cells,from |
R10819 | T12219 | T12220 | auxpass | were,incubated |
R10820 | T12220 | T12220 | ROOT | incubated,incubated |
R10821 | T12221 | T12220 | prep | with,incubated |
R10822 | T12222 | T12223 | amod | Quanti-Blue,substrate |
R10823 | T12223 | T12221 | pobj | substrate,with |
R10824 | T12224 | T12225 | punct | (,Invivogen |
R10825 | T12225 | T12223 | appos | Invivogen,substrate |
R10826 | T12226 | T12225 | punct | ),Invivogen |
R10827 | T12227 | T12220 | prep | at,incubated |
R10828 | T12228 | T12229 | nummod | 37,° |
R10829 | T12229 | T12230 | nummod | °,C |
R10830 | T12230 | T12227 | pobj | C,at |
R10831 | T12231 | T12220 | cc | and,incubated |
R10832 | T12232 | T12220 | conj | allowed,incubated |
R10833 | T12233 | T12234 | aux | to,develop |
R10834 | T12234 | T12232 | xcomp | develop,allowed |
R10835 | T12235 | T12234 | prep | for,develop |
R10836 | T12236 | T12235 | pobj | 16,for |
R10837 | T12237 | T12238 | nummod | 18,hours |
R10838 | T12238 | T12236 | appos | hours,16 |
R10839 | T12239 | T12220 | punct | .,incubated |
R10840 | T12240 | T12241 | nsubj | Quanti-Blue,contains |
R10841 | T12241 | T12241 | ROOT | contains,contains |
R10842 | T12242 | T12243 | det | a,substrate |
R10843 | T12243 | T12241 | dobj | substrate,contains |
R10844 | T12244 | T12243 | prep | for,substrate |
R10845 | T12245 | T12246 | amod | alkaline,phosphatase |
R10846 | T12246 | T12244 | pobj | phosphatase,for |
R10847 | T12247 | T12246 | cc | and,phosphatase |
R10848 | T12248 | T12258 | nsubjpass | changes,quantified |
R10849 | T12249 | T12248 | prep | in,changes |
R10850 | T12250 | T12251 | det | the,amount |
R10851 | T12251 | T12249 | pobj | amount,in |
R10852 | T12252 | T12251 | prep | of,amount |
R10853 | T12253 | T12255 | compound | NF-κB,AP-1 |
R10854 | T12254 | T12255 | compound | /,AP-1 |
R10855 | T12255 | T12256 | compound | AP-1,activity |
R10856 | T12256 | T12252 | pobj | activity,of |
R10857 | T12257 | T12258 | auxpass | were,quantified |
R10858 | T12258 | T12243 | relcl | quantified,substrate |
R10859 | T12259 | T12258 | agent | by,quantified |
R10860 | T12260 | T12261 | amod | optical,density |
R10861 | T12261 | T12259 | pobj | density,by |
R10862 | T12262 | T12265 | punct | (,655 |
R10863 | T12263 | T12265 | nmod | λ,655 |
R10864 | T12264 | T12265 | punct | =,655 |
R10865 | T12265 | T12261 | appos | 655,density |
R10866 | T12266 | T12261 | punct | ),density |
R10867 | T12267 | T12243 | acl | measured,substrate |
R10868 | T12268 | T12267 | advcl | using,measured |
R10869 | T12269 | T12274 | det | a,reader |
R10870 | T12270 | T12272 | nmod | SpectraMax,Plus |
R10871 | T12271 | T12272 | nummod | 384,Plus |
R10872 | T12272 | T12274 | nmod | Plus,reader |
R10873 | T12273 | T12274 | compound | plate,reader |
R10874 | T12274 | T12268 | dobj | reader,using |
R10875 | T12275 | T12274 | cc | and,reader |
R10876 | T12276 | T12278 | nmod | SoftMax,software |
R10877 | T12277 | T12278 | amod | Pro,software |
R10878 | T12278 | T12274 | conj | software,reader |
R10879 | T12279 | T12281 | punct | (,Devices |
R10880 | T12280 | T12281 | compound | Molecular,Devices |
R10881 | T12281 | T12278 | appos | Devices,software |
R10882 | T12282 | T12241 | punct | ),contains |
R10883 | T12283 | T12241 | punct | .,contains |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12143 | 0-10 | NN | denotes | NF-κB/AP-1 |
T12144 | 11-19 | NN | denotes | Activity |
T12145 | 20-25 | NN | denotes | Assay |
T12146 | 26-38 | NN | denotes | Supernatants |
T12147 | 39-43 | IN | denotes | from |
T12148 | 44-49 | NN | denotes | THP-1 |
T12149 | 50-58 | NN | denotes | reporter |
T12150 | 59-64 | NN | denotes | cells |
T12151 | 65-69 | VB | denotes | were |
T12152 | 70-79 | VB | denotes | incubated |
T12153 | 80-84 | IN | denotes | with |
T12154 | 85-96 | JJ | denotes | Quanti-Blue |
T12155 | 97-106 | NN | denotes | substrate |
T12156 | 107-108 | -LRB- | denotes | ( |
T12157 | 108-117 | NN | denotes | Invivogen |
T12158 | 117-118 | -RRB- | denotes | ) |
T12159 | 119-121 | IN | denotes | at |
T12160 | 122-126 | NN | denotes | 37°C |
T12161 | 127-130 | CC | denotes | and |
T12162 | 131-138 | VB | denotes | allowed |
T12163 | 139-141 | TO | denotes | to |
T12164 | 142-149 | VB | denotes | develop |
T12165 | 150-153 | IN | denotes | for |
T12166 | 154-159 | CD | denotes | 16–18 |
T12167 | 160-165 | NN | denotes | hours |
T12168 | 167-178 | NN | denotes | Quanti-Blue |
T12169 | 179-187 | VB | denotes | contains |
T12170 | 188-189 | DT | denotes | a |
T12171 | 190-199 | NN | denotes | substrate |
T12172 | 200-203 | IN | denotes | for |
T12173 | 204-212 | NN | denotes | alkaline |
T12174 | 213-224 | NN | denotes | phosphatase |
T12175 | 225-228 | CC | denotes | and |
T12176 | 229-236 | NN | denotes | changes |
T12177 | 237-239 | IN | denotes | in |
T12178 | 240-243 | DT | denotes | the |
T12179 | 244-250 | NN | denotes | amount |
T12180 | 251-253 | IN | denotes | of |
T12181 | 254-264 | NN | denotes | NF-κB/AP-1 |
T12182 | 265-273 | NN | denotes | activity |
T12183 | 274-278 | VB | denotes | were |
T12184 | 279-289 | VB | denotes | quantified |
T12185 | 290-292 | IN | denotes | by |
T12186 | 293-300 | JJ | denotes | optical |
T12187 | 301-308 | NN | denotes | density |
T12188 | 309-310 | -LRB- | denotes | ( |
T12189 | 310-317 | CD | denotes | λ = 655 |
T12190 | 317-318 | -RRB- | denotes | ) |
T12191 | 319-327 | VB | denotes | measured |
T12192 | 328-333 | VB | denotes | using |
T12193 | 334-335 | DT | denotes | a |
T12194 | 336-346 | NN | denotes | SpectraMax |
T12195 | 347-350 | CD | denotes | 384 |
T12196 | 351-355 | NN | denotes | Plus |
T12197 | 356-361 | NN | denotes | plate |
T12198 | 362-368 | NN | denotes | reader |
T12199 | 369-372 | CC | denotes | and |
T12200 | 373-380 | NNP | denotes | SoftMax |
T12201 | 381-384 | NN | denotes | Pro |
T12202 | 385-393 | NN | denotes | software |
T12203 | 394-395 | -LRB- | denotes | ( |
T12204 | 395-404 | NNP | denotes | Molecular |
T12205 | 405-412 | NNP | denotes | Devices |
T12206 | 412-413 | -RRB- | denotes | ) |
R10744 | T12145 | T12143 | arg1Of | Assay,NF-κB/AP-1 |
R10745 | T12145 | T12144 | arg1Of | Assay,Activity |
R10746 | T12146 | T12147 | arg1Of | Supernatants,from |
R10747 | T12146 | T12151 | arg1Of | Supernatants,were |
R10748 | T12146 | T12152 | arg2Of | Supernatants,incubated |
R10749 | T12146 | T12162 | arg2Of | Supernatants,allowed |
R10750 | T12146 | T12164 | arg1Of | Supernatants,develop |
R10751 | T12150 | T12147 | arg2Of | cells,from |
R10752 | T12150 | T12148 | arg1Of | cells,THP-1 |
R10753 | T12150 | T12149 | arg1Of | cells,reporter |
R10754 | T12152 | T12153 | arg1Of | incubated,with |
R10755 | T12152 | T12161 | arg1Of | incubated,and |
R10756 | T12155 | T12153 | arg2Of | substrate,with |
R10757 | T12155 | T12154 | arg1Of | substrate,Quanti-Blue |
R10758 | T12155 | T12156 | arg1Of | substrate,( |
R10759 | T12155 | T12159 | arg1Of | substrate,at |
R10760 | T12157 | T12156 | arg2Of | Invivogen,( |
R10761 | T12158 | T12156 | arg3Of | ),( |
R10762 | T12160 | T12159 | arg2Of | 37°C,at |
R10763 | T12161 | T12151 | arg2Of | and,were |
R10764 | T12162 | T12161 | arg2Of | allowed,and |
R10765 | T12164 | T12162 | arg3Of | develop,allowed |
R10766 | T12164 | T12163 | arg1Of | develop,to |
R10767 | T12164 | T12165 | arg1Of | develop,for |
R10768 | T12167 | T12165 | arg2Of | hours,for |
R10769 | T12167 | T12166 | arg1Of | hours,16–18 |
R10770 | T12168 | T12169 | arg1Of | Quanti-Blue,contains |
R10771 | T12169 | T12175 | arg1Of | contains,and |
R10772 | T12171 | T12169 | arg2Of | substrate,contains |
R10773 | T12171 | T12170 | arg1Of | substrate,a |
R10774 | T12171 | T12172 | arg1Of | substrate,for |
R10775 | T12174 | T12172 | arg2Of | phosphatase,for |
R10776 | T12174 | T12173 | arg1Of | phosphatase,alkaline |
R10777 | T12176 | T12177 | arg1Of | changes,in |
R10778 | T12176 | T12183 | arg1Of | changes,were |
R10779 | T12176 | T12184 | arg2Of | changes,quantified |
R10780 | T12179 | T12177 | arg2Of | amount,in |
R10781 | T12179 | T12178 | arg1Of | amount,the |
R10782 | T12179 | T12180 | arg1Of | amount,of |
R10783 | T12182 | T12180 | arg2Of | activity,of |
R10784 | T12182 | T12181 | arg1Of | activity,NF-κB/AP-1 |
R10785 | T12184 | T12175 | arg2Of | quantified,and |
R10786 | T12184 | T12183 | arg2Of | quantified,were |
R10787 | T12184 | T12192 | modOf | quantified,using |
R10788 | T12187 | T12184 | arg1Of | density,quantified |
R10789 | T12187 | T12185 | arg2Of | density,by |
R10790 | T12187 | T12186 | arg1Of | density,optical |
R10791 | T12187 | T12188 | arg1Of | density,( |
R10792 | T12187 | T12191 | arg2Of | density,measured |
R10793 | T12189 | T12188 | arg2Of | λ = 655,( |
R10794 | T12190 | T12188 | arg3Of | ),( |
R10795 | T12198 | T12193 | arg1Of | reader,a |
R10796 | T12198 | T12194 | arg1Of | reader,SpectraMax |
R10797 | T12198 | T12195 | arg1Of | reader,384 |
R10798 | T12198 | T12196 | arg1Of | reader,Plus |
R10799 | T12198 | T12197 | arg1Of | reader,plate |
R10800 | T12198 | T12199 | arg1Of | reader,and |
R10801 | T12199 | T12192 | arg2Of | and,using |
R10802 | T12202 | T12199 | arg2Of | software,and |
R10803 | T12202 | T12200 | arg1Of | software,SoftMax |
R10804 | T12202 | T12201 | arg1Of | software,Pro |
R10805 | T12202 | T12203 | arg1Of | software,( |
R10806 | T12205 | T12203 | arg2Of | Devices,( |
R10807 | T12205 | T12204 | arg1Of | Devices,Molecular |
R10808 | T12206 | T12203 | arg3Of | ),( |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12140 | 0-25 | Sentence | denotes | NF-κB/AP-1 Activity Assay |
T12141 | 26-166 | Sentence | denotes | Supernatants from THP-1 reporter cells were incubated with Quanti-Blue substrate (Invivogen) at 37°C and allowed to develop for 16–18 hours. |
T12142 | 167-414 | Sentence | denotes | Quanti-Blue contains a substrate for alkaline phosphatase and changes in the amount of NF-κB/AP-1 activity were quantified by optical density (λ = 655) measured using a SpectraMax 384 Plus plate reader and SoftMax Pro software (Molecular Devices). |
T226 | 0-25 | Sentence | denotes | NF-κB/AP-1 Activity Assay |
T227 | 26-166 | Sentence | denotes | Supernatants from THP-1 reporter cells were incubated with Quanti-Blue substrate (Invivogen) at 37°C and allowed to develop for 16–18 hours. |
T228 | 167-414 | Sentence | denotes | Quanti-Blue contains a substrate for alkaline phosphatase and changes in the amount of NF-κB/AP-1 activity were quantified by optical density (λ = 655) measured using a SpectraMax 384 Plus plate reader and SoftMax Pro software (Molecular Devices). |