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PMC:3359311 / 32073-32301 JSONTXT

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bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T12130 211-215 Protein denotes PAO1

GO-CC

Id Subject Object Predicate Lexical cue
T12118 61-66 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T12119 81-86 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T11982 0-5 NNS denotes PBMCs
T11983 6-10 VBD denotes were
T11984 11-17 VBN denotes seeded
T11985 18-20 IN denotes in
T11986 21-22 DT denotes a
T11987 23-30 JJ denotes 96-well
T11988 31-36 NN denotes plate
T11989 37-39 IN denotes at
T11990 40-41 DT denotes a
T11991 42-49 NN denotes density
T11992 50-52 IN denotes of
T11993 53-56 CD denotes 4.5
T11994 56-57 CD denotes ×
T11995 57-60 CD denotes 105
T11996 61-71 NN denotes cells/well
T11997 72-73 -LRB- denotes (
T11998 73-76 CD denotes 2.5
T11999 76-77 CD denotes ×
T12000 77-80 CD denotes 106
T12001 81-89 NN denotes cells/ml
T12002 89-90 -RRB- denotes )
T12003 90-91 , denotes ,
T12004 92-98 VBN denotes primed
T12005 99-103 IN denotes with
T12006 104-107 NNP denotes LPS
T12007 108-111 IN denotes for
T12008 112-113 CD denotes 5
T12009 114-119 NNS denotes hours
T12010 120-123 CC denotes and
T12011 124-128 RB denotes then
T12012 129-139 VBN denotes stimulated
T12013 140-144 IN denotes with
T12014 145-148 NNP denotes ATP
T12015 149-152 IN denotes for
T12016 153-154 CD denotes 1
T12017 155-159 NN denotes hour
T12018 160-162 CC denotes or
T12019 163-167 NNP denotes Poly
T12020 167-168 -LRB- denotes (
T12021 168-170 NNP denotes dA
T12022 170-171 : denotes :
T12023 171-173 NN denotes dT
T12024 173-174 -RRB- denotes )
T12025 175-178 IN denotes for
T12026 179-180 CD denotes 3
T12027 181-186 NNS denotes hours
T12028 187-189 CC denotes or
T12029 190-200 VBN denotes stimulated
T12030 201-205 IN denotes with
T12031 206-210 JJ denotes live
T12032 211-215 NN denotes PAO1
T12033 216-219 IN denotes for
T12034 220-221 CD denotes 3
T12035 222-227 NNS denotes hours
T12036 227-228 . denotes .
R10616 T11982 T11984 nsubjpass PBMCs,seeded
R10617 T11983 T11984 auxpass were,seeded
R10618 T11984 T11984 ROOT seeded,seeded
R10619 T11985 T11984 prep in,seeded
R10620 T11986 T11988 det a,plate
R10621 T11987 T11988 amod 96-well,plate
R10622 T11988 T11985 pobj plate,in
R10623 T11989 T11984 prep at,seeded
R10624 T11990 T11991 det a,density
R10625 T11991 T11989 pobj density,at
R10626 T11992 T11991 prep of,density
R10627 T11993 T11996 nummod 4.5,cells/well
R10628 T11994 T11996 nmod ×,cells/well
R10629 T11995 T11996 nummod 105,cells/well
R10630 T11996 T11992 pobj cells/well,of
R10631 T11997 T11996 punct (,cells/well
R10632 T11998 T12001 nummod 2.5,cells/ml
R10633 T11999 T12001 nummod ×,cells/ml
R10634 T12000 T12001 nummod 106,cells/ml
R10635 T12001 T11996 appos cells/ml,cells/well
R10636 T12002 T11996 punct ),cells/well
R10637 T12003 T11996 punct ",",cells/well
R10638 T12004 T11991 acl primed,density
R10639 T12005 T12004 prep with,primed
R10640 T12006 T12005 pobj LPS,with
R10641 T12007 T12004 prep for,primed
R10642 T12008 T12009 nummod 5,hours
R10643 T12009 T12007 pobj hours,for
R10644 T12010 T11984 cc and,seeded
R10645 T12011 T12012 advmod then,stimulated
R10646 T12012 T11984 conj stimulated,seeded
R10647 T12013 T12012 prep with,stimulated
R10648 T12014 T12013 pobj ATP,with
R10649 T12015 T12012 prep for,stimulated
R10650 T12016 T12017 nummod 1,hour
R10651 T12017 T12015 pobj hour,for
R10652 T12018 T12017 cc or,hour
R10653 T12019 T12017 conj Poly,hour
R10654 T12020 T12019 punct (,Poly
R10655 T12021 T12019 nmod dA,Poly
R10656 T12022 T12019 punct :,Poly
R10657 T12023 T12019 appos dT,Poly
R10658 T12024 T12019 punct ),Poly
R10659 T12025 T12012 prep for,stimulated
R10660 T12026 T12027 nummod 3,hours
R10661 T12027 T12025 pobj hours,for
R10662 T12028 T12012 cc or,stimulated
R10663 T12029 T12012 conj stimulated,stimulated
R10664 T12030 T12029 prep with,stimulated
R10665 T12031 T12032 amod live,PAO1
R10666 T12032 T12030 pobj PAO1,with
R10667 T12033 T12029 prep for,stimulated
R10668 T12034 T12035 nummod 3,hours
R10669 T12035 T12033 pobj hours,for
R10670 T12036 T11984 punct .,seeded

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T11811 0-5 NN denotes PBMCs
T11812 6-10 VB denotes were
T11813 11-17 VB denotes seeded
T11814 18-20 IN denotes in
T11815 21-22 DT denotes a
T11816 23-30 JJ denotes 96-well
T11817 31-36 NN denotes plate
T11818 37-39 IN denotes at
T11819 40-41 DT denotes a
T11820 42-49 NN denotes density
T11821 50-52 IN denotes of
T11822 53-60 CD denotes 4.5×105
T11823 61-71 NN denotes cells/well
T11824 72-73 -LRB- denotes (
T11825 73-80 CD denotes 2.5×106
T11826 81-89 NN denotes cells/ml
T11827 89-90 -RRB- denotes )
T11828 90-91 -COMMA- denotes ,
T11829 92-98 VB denotes primed
T11830 99-103 IN denotes with
T11831 104-107 NN denotes LPS
T11832 108-111 IN denotes for
T11833 112-113 CD denotes 5
T11834 114-119 NN denotes hours
T11835 120-123 CC denotes and
T11836 124-128 RB denotes then
T11837 129-139 VB denotes stimulated
T11838 140-144 IN denotes with
T11839 145-148 NN denotes ATP
T11840 149-152 IN denotes for
T11841 153-154 CD denotes 1
T11842 155-159 NN denotes hour
T11843 160-162 CC denotes or
T11844 163-167 NN denotes Poly
T11845 167-168 -LRB- denotes (
T11846 168-170 NN denotes dA
T11847 170-171 -COLON- denotes :
T11848 171-173 NN denotes dT
T11849 173-174 -RRB- denotes )
T11850 175-178 IN denotes for
T11851 179-180 CD denotes 3
T11852 181-186 NN denotes hours
T11853 187-189 CC denotes or
T11854 190-200 VB denotes stimulated
T11855 201-205 IN denotes with
T11856 206-210 JJ denotes live
T11857 211-215 NN denotes PAO1
T11858 216-219 IN denotes for
T11859 220-221 CD denotes 3
T11860 222-227 NN denotes hours
R10443 T11811 T11812 arg1Of PBMCs,were
R10444 T11811 T11813 arg2Of PBMCs,seeded
R10445 T11811 T11837 arg2Of PBMCs,stimulated
R10446 T11811 T11854 arg2Of PBMCs,stimulated
R10447 T11813 T11814 arg1Of seeded,in
R10448 T11813 T11818 arg1Of seeded,at
R10449 T11813 T11835 arg1Of seeded,and
R10450 T11817 T11814 arg2Of plate,in
R10451 T11817 T11815 arg1Of plate,a
R10452 T11817 T11816 arg1Of plate,96-well
R10453 T11820 T11818 arg2Of density,at
R10454 T11820 T11819 arg1Of density,a
R10455 T11820 T11821 arg1Of density,of
R10456 T11820 T11828 arg1Of density,","
R10457 T11820 T11829 arg2Of density,primed
R10458 T11823 T11821 arg2Of cells/well,of
R10459 T11823 T11822 arg1Of cells/well,4.5×105
R10460 T11823 T11824 arg1Of cells/well,(
R10461 T11826 T11824 arg2Of cells/ml,(
R10462 T11826 T11825 arg1Of cells/ml,2.5×106
R10463 T11827 T11824 arg3Of ),(
R10464 T11829 T11830 arg1Of primed,with
R10465 T11829 T11832 arg1Of primed,for
R10466 T11831 T11830 arg2Of LPS,with
R10467 T11834 T11832 arg2Of hours,for
R10468 T11834 T11833 arg1Of hours,5
R10469 T11835 T11812 arg2Of and,were
R10470 T11837 T11838 arg1Of stimulated,with
R10471 T11837 T11853 arg1Of stimulated,or
R10472 T11839 T11838 arg2Of ATP,with
R10473 T11839 T11840 arg1Of ATP,for
R10474 T11839 T11850 arg1Of ATP,for
R10475 T11842 T11841 arg1Of hour,1
R10476 T11842 T11843 arg1Of hour,or
R10477 T11843 T11840 arg2Of or,for
R10478 T11844 T11843 arg2Of Poly,or
R10479 T11844 T11845 arg1Of Poly,(
R10480 T11846 T11845 arg2Of dA,(
R10481 T11846 T11847 arg1Of dA,:
R10482 T11846 T11848 arg1Of dA,dT
R10483 T11849 T11845 arg3Of ),(
R10484 T11852 T11850 arg2Of hours,for
R10485 T11852 T11851 arg1Of hours,3
R10486 T11853 T11835 arg2Of or,and
R10487 T11853 T11836 arg1Of or,then
R10488 T11854 T11853 arg2Of stimulated,or
R10489 T11854 T11855 arg1Of stimulated,with
R10490 T11854 T11858 arg1Of stimulated,for
R10491 T11857 T11855 arg2Of PAO1,with
R10492 T11857 T11856 arg1Of PAO1,live
R10493 T11860 T11858 arg2Of hours,for
R10494 T11860 T11859 arg1Of hours,3

sentences

Id Subject Object Predicate Lexical cue
T11759 0-228 Sentence denotes PBMCs were seeded in a 96-well plate at a density of 4.5×105 cells/well (2.5×106 cells/ml), primed with LPS for 5 hours and then stimulated with ATP for 1 hour or Poly(dA:dT) for 3 hours or stimulated with live PAO1 for 3 hours.
T222 0-228 Sentence denotes PBMCs were seeded in a 96-well plate at a density of 4.5×105 cells/well (2.5×106 cells/ml), primed with LPS for 5 hours and then stimulated with ATP for 1 hour or Poly(dA:dT) for 3 hours or stimulated with live PAO1 for 3 hours.