PMC:3359311 / 32073-32301
Annnotations
bionlp-st-ge-2016-reference-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12130 | 211-215 | Protein | denotes | PAO1 |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12118 | 61-66 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
T12119 | 81-86 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11982 | 0-5 | NNS | denotes | PBMCs |
T11983 | 6-10 | VBD | denotes | were |
T11984 | 11-17 | VBN | denotes | seeded |
T11985 | 18-20 | IN | denotes | in |
T11986 | 21-22 | DT | denotes | a |
T11987 | 23-30 | JJ | denotes | 96-well |
T11988 | 31-36 | NN | denotes | plate |
T11989 | 37-39 | IN | denotes | at |
T11990 | 40-41 | DT | denotes | a |
T11991 | 42-49 | NN | denotes | density |
T11992 | 50-52 | IN | denotes | of |
T11993 | 53-56 | CD | denotes | 4.5 |
T11994 | 56-57 | CD | denotes | × |
T11995 | 57-60 | CD | denotes | 105 |
T11996 | 61-71 | NN | denotes | cells/well |
T11997 | 72-73 | -LRB- | denotes | ( |
T11998 | 73-76 | CD | denotes | 2.5 |
T11999 | 76-77 | CD | denotes | × |
T12000 | 77-80 | CD | denotes | 106 |
T12001 | 81-89 | NN | denotes | cells/ml |
T12002 | 89-90 | -RRB- | denotes | ) |
T12003 | 90-91 | , | denotes | , |
T12004 | 92-98 | VBN | denotes | primed |
T12005 | 99-103 | IN | denotes | with |
T12006 | 104-107 | NNP | denotes | LPS |
T12007 | 108-111 | IN | denotes | for |
T12008 | 112-113 | CD | denotes | 5 |
T12009 | 114-119 | NNS | denotes | hours |
T12010 | 120-123 | CC | denotes | and |
T12011 | 124-128 | RB | denotes | then |
T12012 | 129-139 | VBN | denotes | stimulated |
T12013 | 140-144 | IN | denotes | with |
T12014 | 145-148 | NNP | denotes | ATP |
T12015 | 149-152 | IN | denotes | for |
T12016 | 153-154 | CD | denotes | 1 |
T12017 | 155-159 | NN | denotes | hour |
T12018 | 160-162 | CC | denotes | or |
T12019 | 163-167 | NNP | denotes | Poly |
T12020 | 167-168 | -LRB- | denotes | ( |
T12021 | 168-170 | NNP | denotes | dA |
T12022 | 170-171 | : | denotes | : |
T12023 | 171-173 | NN | denotes | dT |
T12024 | 173-174 | -RRB- | denotes | ) |
T12025 | 175-178 | IN | denotes | for |
T12026 | 179-180 | CD | denotes | 3 |
T12027 | 181-186 | NNS | denotes | hours |
T12028 | 187-189 | CC | denotes | or |
T12029 | 190-200 | VBN | denotes | stimulated |
T12030 | 201-205 | IN | denotes | with |
T12031 | 206-210 | JJ | denotes | live |
T12032 | 211-215 | NN | denotes | PAO1 |
T12033 | 216-219 | IN | denotes | for |
T12034 | 220-221 | CD | denotes | 3 |
T12035 | 222-227 | NNS | denotes | hours |
T12036 | 227-228 | . | denotes | . |
R10616 | T11982 | T11984 | nsubjpass | PBMCs,seeded |
R10617 | T11983 | T11984 | auxpass | were,seeded |
R10618 | T11984 | T11984 | ROOT | seeded,seeded |
R10619 | T11985 | T11984 | prep | in,seeded |
R10620 | T11986 | T11988 | det | a,plate |
R10621 | T11987 | T11988 | amod | 96-well,plate |
R10622 | T11988 | T11985 | pobj | plate,in |
R10623 | T11989 | T11984 | prep | at,seeded |
R10624 | T11990 | T11991 | det | a,density |
R10625 | T11991 | T11989 | pobj | density,at |
R10626 | T11992 | T11991 | prep | of,density |
R10627 | T11993 | T11996 | nummod | 4.5,cells/well |
R10628 | T11994 | T11996 | nmod | ×,cells/well |
R10629 | T11995 | T11996 | nummod | 105,cells/well |
R10630 | T11996 | T11992 | pobj | cells/well,of |
R10631 | T11997 | T11996 | punct | (,cells/well |
R10632 | T11998 | T12001 | nummod | 2.5,cells/ml |
R10633 | T11999 | T12001 | nummod | ×,cells/ml |
R10634 | T12000 | T12001 | nummod | 106,cells/ml |
R10635 | T12001 | T11996 | appos | cells/ml,cells/well |
R10636 | T12002 | T11996 | punct | ),cells/well |
R10637 | T12003 | T11996 | punct | ",",cells/well |
R10638 | T12004 | T11991 | acl | primed,density |
R10639 | T12005 | T12004 | prep | with,primed |
R10640 | T12006 | T12005 | pobj | LPS,with |
R10641 | T12007 | T12004 | prep | for,primed |
R10642 | T12008 | T12009 | nummod | 5,hours |
R10643 | T12009 | T12007 | pobj | hours,for |
R10644 | T12010 | T11984 | cc | and,seeded |
R10645 | T12011 | T12012 | advmod | then,stimulated |
R10646 | T12012 | T11984 | conj | stimulated,seeded |
R10647 | T12013 | T12012 | prep | with,stimulated |
R10648 | T12014 | T12013 | pobj | ATP,with |
R10649 | T12015 | T12012 | prep | for,stimulated |
R10650 | T12016 | T12017 | nummod | 1,hour |
R10651 | T12017 | T12015 | pobj | hour,for |
R10652 | T12018 | T12017 | cc | or,hour |
R10653 | T12019 | T12017 | conj | Poly,hour |
R10654 | T12020 | T12019 | punct | (,Poly |
R10655 | T12021 | T12019 | nmod | dA,Poly |
R10656 | T12022 | T12019 | punct | :,Poly |
R10657 | T12023 | T12019 | appos | dT,Poly |
R10658 | T12024 | T12019 | punct | ),Poly |
R10659 | T12025 | T12012 | prep | for,stimulated |
R10660 | T12026 | T12027 | nummod | 3,hours |
R10661 | T12027 | T12025 | pobj | hours,for |
R10662 | T12028 | T12012 | cc | or,stimulated |
R10663 | T12029 | T12012 | conj | stimulated,stimulated |
R10664 | T12030 | T12029 | prep | with,stimulated |
R10665 | T12031 | T12032 | amod | live,PAO1 |
R10666 | T12032 | T12030 | pobj | PAO1,with |
R10667 | T12033 | T12029 | prep | for,stimulated |
R10668 | T12034 | T12035 | nummod | 3,hours |
R10669 | T12035 | T12033 | pobj | hours,for |
R10670 | T12036 | T11984 | punct | .,seeded |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11811 | 0-5 | NN | denotes | PBMCs |
T11812 | 6-10 | VB | denotes | were |
T11813 | 11-17 | VB | denotes | seeded |
T11814 | 18-20 | IN | denotes | in |
T11815 | 21-22 | DT | denotes | a |
T11816 | 23-30 | JJ | denotes | 96-well |
T11817 | 31-36 | NN | denotes | plate |
T11818 | 37-39 | IN | denotes | at |
T11819 | 40-41 | DT | denotes | a |
T11820 | 42-49 | NN | denotes | density |
T11821 | 50-52 | IN | denotes | of |
T11822 | 53-60 | CD | denotes | 4.5×105 |
T11823 | 61-71 | NN | denotes | cells/well |
T11824 | 72-73 | -LRB- | denotes | ( |
T11825 | 73-80 | CD | denotes | 2.5×106 |
T11826 | 81-89 | NN | denotes | cells/ml |
T11827 | 89-90 | -RRB- | denotes | ) |
T11828 | 90-91 | -COMMA- | denotes | , |
T11829 | 92-98 | VB | denotes | primed |
T11830 | 99-103 | IN | denotes | with |
T11831 | 104-107 | NN | denotes | LPS |
T11832 | 108-111 | IN | denotes | for |
T11833 | 112-113 | CD | denotes | 5 |
T11834 | 114-119 | NN | denotes | hours |
T11835 | 120-123 | CC | denotes | and |
T11836 | 124-128 | RB | denotes | then |
T11837 | 129-139 | VB | denotes | stimulated |
T11838 | 140-144 | IN | denotes | with |
T11839 | 145-148 | NN | denotes | ATP |
T11840 | 149-152 | IN | denotes | for |
T11841 | 153-154 | CD | denotes | 1 |
T11842 | 155-159 | NN | denotes | hour |
T11843 | 160-162 | CC | denotes | or |
T11844 | 163-167 | NN | denotes | Poly |
T11845 | 167-168 | -LRB- | denotes | ( |
T11846 | 168-170 | NN | denotes | dA |
T11847 | 170-171 | -COLON- | denotes | : |
T11848 | 171-173 | NN | denotes | dT |
T11849 | 173-174 | -RRB- | denotes | ) |
T11850 | 175-178 | IN | denotes | for |
T11851 | 179-180 | CD | denotes | 3 |
T11852 | 181-186 | NN | denotes | hours |
T11853 | 187-189 | CC | denotes | or |
T11854 | 190-200 | VB | denotes | stimulated |
T11855 | 201-205 | IN | denotes | with |
T11856 | 206-210 | JJ | denotes | live |
T11857 | 211-215 | NN | denotes | PAO1 |
T11858 | 216-219 | IN | denotes | for |
T11859 | 220-221 | CD | denotes | 3 |
T11860 | 222-227 | NN | denotes | hours |
R10443 | T11811 | T11812 | arg1Of | PBMCs,were |
R10444 | T11811 | T11813 | arg2Of | PBMCs,seeded |
R10445 | T11811 | T11837 | arg2Of | PBMCs,stimulated |
R10446 | T11811 | T11854 | arg2Of | PBMCs,stimulated |
R10447 | T11813 | T11814 | arg1Of | seeded,in |
R10448 | T11813 | T11818 | arg1Of | seeded,at |
R10449 | T11813 | T11835 | arg1Of | seeded,and |
R10450 | T11817 | T11814 | arg2Of | plate,in |
R10451 | T11817 | T11815 | arg1Of | plate,a |
R10452 | T11817 | T11816 | arg1Of | plate,96-well |
R10453 | T11820 | T11818 | arg2Of | density,at |
R10454 | T11820 | T11819 | arg1Of | density,a |
R10455 | T11820 | T11821 | arg1Of | density,of |
R10456 | T11820 | T11828 | arg1Of | density,"," |
R10457 | T11820 | T11829 | arg2Of | density,primed |
R10458 | T11823 | T11821 | arg2Of | cells/well,of |
R10459 | T11823 | T11822 | arg1Of | cells/well,4.5×105 |
R10460 | T11823 | T11824 | arg1Of | cells/well,( |
R10461 | T11826 | T11824 | arg2Of | cells/ml,( |
R10462 | T11826 | T11825 | arg1Of | cells/ml,2.5×106 |
R10463 | T11827 | T11824 | arg3Of | ),( |
R10464 | T11829 | T11830 | arg1Of | primed,with |
R10465 | T11829 | T11832 | arg1Of | primed,for |
R10466 | T11831 | T11830 | arg2Of | LPS,with |
R10467 | T11834 | T11832 | arg2Of | hours,for |
R10468 | T11834 | T11833 | arg1Of | hours,5 |
R10469 | T11835 | T11812 | arg2Of | and,were |
R10470 | T11837 | T11838 | arg1Of | stimulated,with |
R10471 | T11837 | T11853 | arg1Of | stimulated,or |
R10472 | T11839 | T11838 | arg2Of | ATP,with |
R10473 | T11839 | T11840 | arg1Of | ATP,for |
R10474 | T11839 | T11850 | arg1Of | ATP,for |
R10475 | T11842 | T11841 | arg1Of | hour,1 |
R10476 | T11842 | T11843 | arg1Of | hour,or |
R10477 | T11843 | T11840 | arg2Of | or,for |
R10478 | T11844 | T11843 | arg2Of | Poly,or |
R10479 | T11844 | T11845 | arg1Of | Poly,( |
R10480 | T11846 | T11845 | arg2Of | dA,( |
R10481 | T11846 | T11847 | arg1Of | dA,: |
R10482 | T11846 | T11848 | arg1Of | dA,dT |
R10483 | T11849 | T11845 | arg3Of | ),( |
R10484 | T11852 | T11850 | arg2Of | hours,for |
R10485 | T11852 | T11851 | arg1Of | hours,3 |
R10486 | T11853 | T11835 | arg2Of | or,and |
R10487 | T11853 | T11836 | arg1Of | or,then |
R10488 | T11854 | T11853 | arg2Of | stimulated,or |
R10489 | T11854 | T11855 | arg1Of | stimulated,with |
R10490 | T11854 | T11858 | arg1Of | stimulated,for |
R10491 | T11857 | T11855 | arg2Of | PAO1,with |
R10492 | T11857 | T11856 | arg1Of | PAO1,live |
R10493 | T11860 | T11858 | arg2Of | hours,for |
R10494 | T11860 | T11859 | arg1Of | hours,3 |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T11759 | 0-228 | Sentence | denotes | PBMCs were seeded in a 96-well plate at a density of 4.5×105 cells/well (2.5×106 cells/ml), primed with LPS for 5 hours and then stimulated with ATP for 1 hour or Poly(dA:dT) for 3 hours or stimulated with live PAO1 for 3 hours. |
T222 | 0-228 | Sentence | denotes | PBMCs were seeded in a 96-well plate at a density of 4.5×105 cells/well (2.5×106 cells/ml), primed with LPS for 5 hours and then stimulated with ATP for 1 hour or Poly(dA:dT) for 3 hours or stimulated with live PAO1 for 3 hours. |