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PMC:3359311 / 19486-19694 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T7393 74-79 P01584 denotes IL-1β
T7394 95-100 P01584 denotes IL-1β

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation Speculation
T5960 45-52 Localization denotes secrete
T5961 53-62 Positive_regulation denotes increased true
T5962 74-79 Protein denotes IL-1β
T5963 95-100 Protein denotes IL-1β
T5964 101-111 Gene_expression denotes production
T5965 132-141 Positive_regulation denotes increased true
R5118 T5960 T5961 themeOf secrete,increased
R5119 T5962 T5960 themeOf IL-1β,secrete
R5120 T5963 T5964 themeOf IL-1β,production
R5121 T5964 T5965 themeOf production,increased

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T9177 74-79 Protein denotes IL-1β
T9178 95-100 Protein denotes IL-1β
T9179 115-123 Protein denotes CF PBMCs
T9180 45-52 Localization denotes secrete
T9181 53-62 Positive_regulation denotes increased
T9182 101-111 Gene_expression denotes production
T9183 101-111 Gene_expression denotes production
T9184 132-141 Positive_regulation denotes increased
T9185 132-141 Positive_regulation denotes increased
R8024 T9177 T9180 themeOf IL-1β,secrete
R8027 T9177 T9181 themeOf IL-1β,increased
R8029 T9178 T9182 themeOf IL-1β,production
R8032 T9179 T9183 themeOf CF PBMCs,production
R8035 T9182 T9184 themeOf production,increased
R8041 T9183 T9185 themeOf production,increased

events-check-again

Id Subject Object Predicate Lexical cue Negation Speculation
T9079 45-52 Localization denotes secrete
T9080 53-62 Positive_regulation denotes increased true
T9081 74-79 Protein denotes IL-1β
T9082 95-100 Protein denotes IL-1β
T9083 101-111 Gene_expression denotes production
T9084 132-141 Positive_regulation denotes increased true
R7982 T9079 T9080 themeOf secrete,increased
R7986 T9081 T9079 themeOf IL-1β,secrete
R7992 T9082 T9083 themeOf IL-1β,production
R7996 T9083 T9084 themeOf production,increased

GO-CC

Id Subject Object Predicate Lexical cue
T8872 33-38 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7723 0-8 IN denotes Although
T7724 9-11 PRP denotes we
T7725 12-24 VBD denotes hypothesized
T7726 25-29 IN denotes that
T7727 30-32 NNP denotes CF
T7728 33-38 NNS denotes cells
T7729 39-44 MD denotes would
T7730 45-52 VB denotes secrete
T7731 53-62 JJ denotes increased
T7732 63-70 NNS denotes amounts
T7733 71-73 IN denotes of
T7734 74-79 NN denotes IL-1β
T7735 79-80 , denotes ,
T7736 81-83 PRP denotes we
T7737 84-89 VBD denotes found
T7738 90-94 IN denotes that
T7739 95-100 JJ denotes IL-1β
T7740 101-111 NN denotes production
T7741 112-114 IN denotes in
T7742 115-117 NNP denotes CF
T7743 118-123 NNP denotes PBMCs
T7744 124-127 VBD denotes was
T7745 128-131 RB denotes not
T7746 132-141 VBN denotes increased
T7747 142-146 IN denotes upon
T7748 147-159 JJ denotes inflammasome
T7749 160-171 NN denotes stimulation
T7750 172-174 IN denotes as
T7751 175-183 VBN denotes compared
T7752 184-186 TO denotes to
T7753 187-195 NNS denotes controls
T7754 196-197 -LRB- denotes (
T7755 197-201 NNP denotes Fig.
T7756 202-204 CD denotes 5a
T7757 205-206 NN denotes b
T7758 206-207 -RRB- denotes )
T7759 207-208 . denotes .
R6811 T7723 T7725 mark Although,hypothesized
R6813 T7724 T7725 nsubj we,hypothesized
R6814 T7725 T7737 advcl hypothesized,found
R6815 T7726 T7730 mark that,secrete
R6817 T7727 T7728 compound CF,cells
R6818 T7728 T7730 nsubj cells,secrete
R6819 T7729 T7730 aux would,secrete
R6820 T7756 T7755 nummod 5a,Fig.
R6821 T7730 T7725 ccomp secrete,hypothesized
R6822 T7731 T7732 amod increased,amounts
R6823 T7732 T7730 dobj amounts,secrete
R6824 T7733 T7732 prep of,amounts
R6825 T7734 T7733 pobj IL-1β,of
R6826 T7735 T7737 punct ",",found
R6827 T7736 T7737 nsubj we,found
R6828 T7757 T7753 appos b,controls
R6829 T7737 T7737 ROOT found,found
R6830 T7738 T7746 mark that,increased
R6831 T7739 T7740 amod IL-1β,production
R6832 T7758 T7746 punct ),increased
R6833 T7740 T7746 nsubjpass production,increased
R6834 T7741 T7740 prep in,production
R6835 T7742 T7743 compound CF,PBMCs
R6836 T7759 T7737 punct .,found
R6837 T7743 T7741 pobj PBMCs,in
R6839 T7744 T7746 auxpass was,increased
R6841 T7745 T7746 neg not,increased
R6842 T7746 T7737 ccomp increased,found
R6844 T7747 T7746 prep upon,increased
R6845 T7748 T7749 amod inflammasome,stimulation
R6846 T7749 T7747 pobj stimulation,upon
R6847 T7750 T7751 mark as,compared
R6848 T7751 T7746 advcl compared,increased
R6850 T7752 T7751 prep to,compared
R6851 T7753 T7752 pobj controls,to
R6852 T7754 T7753 punct (,controls
R6854 T7755 T7753 appos Fig.,controls

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T6362 0-8 IN denotes Although
T6363 9-11 PRP denotes we
T6364 12-24 VB denotes hypothesized
T6365 25-29 IN denotes that
T6366 30-32 NN denotes CF
T6367 33-38 NN denotes cells
T6368 39-44 MD denotes would
T6369 45-52 VB denotes secrete
T6370 53-62 VB denotes increased
T6371 63-70 NN denotes amounts
T6372 71-73 IN denotes of
T6373 74-79 NN denotes IL-1β
T6374 79-80 -COMMA- denotes ,
T6375 81-83 PRP denotes we
T6376 84-89 VB denotes found
T6377 90-94 IN denotes that
T6378 95-100 NN denotes IL-1β
T6379 101-111 NN denotes production
T6380 112-114 IN denotes in
T6381 115-117 NN denotes CF
T6382 118-123 NN denotes PBMCs
T6383 124-127 VB denotes was
T6384 128-131 RB denotes not
T6385 132-141 VB denotes increased
T6386 142-146 IN denotes upon
T6387 147-159 JJ denotes inflammasome
T6388 160-171 NN denotes stimulation
T6389 172-174 IN denotes as
T6390 175-183 VB denotes compared
T6391 184-186 TO denotes to
T6392 187-195 NN denotes controls
T6393 196-197 -LRB- denotes (
T6394 197-201 NNP denotes Fig.
T6395 202-206 NN denotes 5a–b
T6396 206-207 -RRB- denotes )
R5466 T6363 T6364 arg1Of we,hypothesized
R5467 T6364 T6362 arg2Of hypothesized,Although
R5468 T6367 T6366 arg1Of cells,CF
R5469 T6367 T6368 arg1Of cells,would
R5470 T6367 T6369 arg1Of cells,secrete
R5471 T6369 T6364 arg2Of secrete,hypothesized
R5472 T6369 T6365 arg1Of secrete,that
R5473 T6369 T6368 arg2Of secrete,would
R5474 T6371 T6369 arg2Of amounts,secrete
R5475 T6371 T6370 arg2Of amounts,increased
R5476 T6371 T6372 arg1Of amounts,of
R5477 T6373 T6372 arg2Of IL-1β,of
R5478 T6375 T6376 arg1Of we,found
R5479 T6376 T6362 arg1Of found,Although
R5480 T6376 T6374 arg1Of found,","
R5481 T6379 T6378 arg1Of production,IL-1β
R5482 T6379 T6380 arg1Of production,in
R5483 T6379 T6383 arg1Of production,was
R5484 T6379 T6385 arg2Of production,increased
R5485 T6382 T6380 arg2Of PBMCs,in
R5486 T6382 T6381 arg1Of PBMCs,CF
R5487 T6385 T6376 arg2Of increased,found
R5488 T6385 T6377 arg1Of increased,that
R5489 T6385 T6383 arg2Of increased,was
R5490 T6385 T6384 arg1Of increased,not
R5491 T6385 T6386 arg1Of increased,upon
R5492 T6385 T6389 arg1Of increased,as
R5493 T6388 T6386 arg2Of stimulation,upon
R5494 T6388 T6387 arg1Of stimulation,inflammasome
R5495 T6390 T6389 arg2Of compared,as
R5496 T6390 T6391 arg1Of compared,to
R5497 T6392 T6391 arg2Of controls,to
R5498 T6392 T6393 arg1Of controls,(
R5499 T6395 T6393 arg2Of 5a–b,(
R5500 T6395 T6394 arg1Of 5a–b,Fig.
R5501 T6396 T6393 arg3Of ),(

sentences

Id Subject Object Predicate Lexical cue
T6045 0-208 Sentence denotes Although we hypothesized that CF cells would secrete increased amounts of IL-1β, we found that IL-1β production in CF PBMCs was not increased upon inflammasome stimulation as compared to controls (Fig. 5a–b).
T132 0-208 Sentence denotes Although we hypothesized that CF cells would secrete increased amounts of IL-1β, we found that IL-1β production in CF PBMCs was not increased upon inflammasome stimulation as compared to controls (Fig. 5a–b).