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PMC:3359311 / 18527-18726 JSONTXT

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bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T9167 0-4 Protein denotes CFTR
T9168 8-17 Gene_expression denotes expressed
R8010 T9167 T9168 themeOf CFTR,expressed

GO-BP

Id Subject Object Predicate Lexical cue
T8827 21-29 http://purl.obolibrary.org/obo/GO_0048286 denotes alveolar

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7547 0-4 NNP denotes CFTR
T7548 5-7 VBZ denotes is
T7549 8-17 VBN denotes expressed
T7550 18-20 IN denotes in
T7551 21-29 JJ denotes alveolar
T7552 30-41 NNS denotes macrophages
T7553 42-43 NNP denotes [
T7554 43-45 CD denotes 32
T7555 45-46 NNP denotes ]
T7556 46-47 , denotes ,
T7557 48-49 NNP denotes [
T7558 49-51 CD denotes 39
T7559 51-52 NNP denotes ]
T7560 53-55 RB denotes as
T7561 56-60 RB denotes well
T7562 61-63 IN denotes as
T7563 64-66 IN denotes in
T7564 67-72 NNP denotes PBMCs
T7565 73-75 IN denotes at
T7566 76-80 DT denotes both
T7567 81-84 DT denotes the
T7568 85-89 NNP denotes mRNA
T7569 90-93 CC denotes and
T7570 94-101 NN denotes protein
T7571 102-107 NN denotes level
T7572 108-109 NNP denotes [
T7573 109-111 CD denotes 40
T7574 111-112 NNP denotes ]
T7575 112-113 , denotes ,
T7576 114-115 NNP denotes [
T7577 115-117 CD denotes 41
T7578 117-118 NNP denotes ]
T7579 118-119 , denotes ,
T7580 120-123 CC denotes and
T7581 124-127 PRP$ denotes its
T7582 128-132 NN denotes loss
T7583 133-135 VBZ denotes is
T7584 136-146 RB denotes frequently
T7585 147-157 VBN denotes associated
T7586 158-162 IN denotes with
T7587 163-165 DT denotes an
T7588 166-175 JJ denotes augmented
T7589 176-188 JJ denotes inflammatory
T7590 189-198 NN denotes phenotype
T7591 198-199 . denotes .
R6589 T7562 T7550 cc as,in
R6591 T7563 T7550 conj in,in
R6593 T7564 T7563 pobj PBMCs,in
R6594 T7565 T7549 prep at,expressed
R6596 T7566 T7568 preconj both,mRNA
R6597 T7567 T7568 det the,mRNA
R6599 T7568 T7565 pobj mRNA,at
R6600 T7569 T7568 cc and,mRNA
R6601 T7570 T7571 compound protein,level
R6603 T7571 T7572 compound level,[
R6604 T7572 T7568 conj [,mRNA
R6605 T7573 T7574 nummod 40,]
R6607 T7574 T7568 conj ],mRNA
R6608 T7575 T7574 punct ",",]
R6609 T7576 T7574 conj [,]
R6612 T7577 T7578 nummod 41,]
R6614 T7578 T7574 conj ],]
R6615 T7579 T7578 punct ",",]
R6617 T7580 T7578 cc and,]
R6618 T7581 T7582 poss its,loss
R6619 T7582 T7578 conj loss,]
R6620 T7583 T7585 auxpass is,associated
R6621 T7584 T7585 advmod frequently,associated
R6622 T7585 T7549 conj associated,expressed
R6623 T7586 T7585 prep with,associated
R6625 T7587 T7590 det an,phenotype
R6626 T7588 T7590 amod augmented,phenotype
R6627 T7589 T7590 amod inflammatory,phenotype
R6628 T7590 T7586 pobj phenotype,with
R6630 T7591 T7549 punct .,expressed
R6763 T7547 T7549 nsubjpass CFTR,expressed
R6764 T7548 T7549 auxpass is,expressed
R6768 T7549 T7549 ROOT expressed,expressed
R6771 T7550 T7549 prep in,expressed
R6775 T7551 T7552 amod alveolar,macrophages
R6779 T7552 T7553 compound macrophages,[
R6784 T7553 T7555 nmod [,]
R6787 T7554 T7555 nummod 32,]
R6790 T7555 T7550 pobj ],in
R6795 T7556 T7555 punct ",",]
R6800 T7557 T7559 compound [,]
R6804 T7558 T7559 compound 39,]
R6808 T7559 T7555 appos ],]
R6812 T7560 T7562 advmod as,as
R6816 T7561 T7562 advmod well,as

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T6191 0-4 NN denotes CFTR
T6192 5-7 VB denotes is
T6193 8-17 VB denotes expressed
T6194 18-20 IN denotes in
T6196 30-41 NN denotes macrophages
T6197 42-43 -LRB- denotes [
T6198 43-45 CD denotes 32
T6199 45-46 -RRB- denotes ]
T6200 46-47 -COMMA- denotes ,
T6201 48-49 -LRB- denotes [
T6202 49-51 CD denotes 39
T6203 51-52 -RRB- denotes ]
T6204 53-55 RB denotes as
T6205 56-60 RB denotes well
T6206 61-63 IN denotes as
T6207 64-66 IN denotes in
T6208 67-72 NN denotes PBMCs
T6209 73-75 IN denotes at
T6210 76-80 CC denotes both
T6211 81-84 DT denotes the
T6212 85-89 NN denotes mRNA
T6213 90-93 CC denotes and
T6214 94-101 NN denotes protein
T6215 102-107 NN denotes level
T6216 108-109 -LRB- denotes [
T6217 109-111 CD denotes 40
T6218 111-112 -RRB- denotes ]
T6219 112-113 -COMMA- denotes ,
T6220 114-115 -LRB- denotes [
T6221 115-117 CD denotes 41
T6222 117-118 -RRB- denotes ]
T6223 118-119 -COMMA- denotes ,
T6224 120-123 CC denotes and
T6225 124-127 PRP-DOLLAR- denotes its
T6226 128-132 NN denotes loss
T6227 133-135 VB denotes is
T6228 136-146 RB denotes frequently
T6229 147-157 VB denotes associated
T6230 158-162 IN denotes with
T6231 163-165 DT denotes an
T6232 166-175 JJ denotes augmented
T6233 176-188 JJ denotes inflammatory
T6234 189-198 NN denotes phenotype
T6195 21-29 JJ denotes alveolar
R5284 T6191 T6192 arg1Of CFTR,is
R5285 T6191 T6193 arg2Of CFTR,expressed
R5286 T6193 T6192 arg2Of expressed,is
R5287 T6193 T6194 arg1Of expressed,in
R5288 T6193 T6207 arg1Of expressed,in
R5289 T6193 T6219 arg1Of expressed,","
R5290 T6193 T6220 arg1Of expressed,[
R5291 T6193 T6224 arg1Of expressed,and
R5292 T6194 T6206 arg1Of in,as
R5293 T6196 T6194 arg2Of macrophages,in
R5294 T6196 T6195 arg1Of macrophages,alveolar
R5295 T6196 T6197 arg1Of macrophages,[
R5296 T6196 T6200 arg1Of macrophages,","
R5297 T6196 T6201 arg1Of macrophages,[
R5298 T6198 T6197 arg2Of 32,[
R5299 T6199 T6197 arg3Of ],[
R5300 T6202 T6201 arg2Of 39,[
R5301 T6203 T6201 arg3Of ],[
R5302 T6206 T6204 arg1Of as,as
R5303 T6206 T6205 arg1Of as,well
R5304 T6207 T6206 arg2Of in,as
R5305 T6208 T6207 arg2Of PBMCs,in
R5306 T6208 T6209 arg1Of PBMCs,at
R5307 T6212 T6213 arg1Of mRNA,and
R5308 T6214 T6213 arg2Of protein,and
R5309 T6215 T6209 arg2Of level,at
R5310 T6215 T6210 arg1Of level,both
R5311 T6215 T6211 arg1Of level,the
R5312 T6215 T6212 arg1Of level,mRNA
R5313 T6215 T6214 arg1Of level,protein
R5314 T6215 T6216 arg1Of level,[
R5315 T6217 T6216 arg2Of 40,[
R5316 T6218 T6216 arg3Of ],[
R5317 T6221 T6220 arg2Of 41,[
R5318 T6222 T6220 arg3Of ],[
R5319 T6224 T6223 arg1Of and,","
R5320 T6226 T6225 arg1Of loss,its
R5321 T6226 T6227 arg1Of loss,is
R5322 T6226 T6229 arg2Of loss,associated
R5323 T6229 T6224 arg2Of associated,and
R5324 T6229 T6227 arg2Of associated,is
R5325 T6229 T6228 arg1Of associated,frequently
R5326 T6229 T6230 arg1Of associated,with
R5327 T6234 T6230 arg2Of phenotype,with
R5328 T6234 T6231 arg1Of phenotype,an
R5329 T6234 T6232 arg1Of phenotype,augmented
R5330 T6234 T6233 arg1Of phenotype,inflammatory

sentences

Id Subject Object Predicate Lexical cue
T6041 0-199 Sentence denotes CFTR is expressed in alveolar macrophages [32], [39] as well as in PBMCs at both the mRNA and protein level [40], [41], and its loss is frequently associated with an augmented inflammatory phenotype.
T128 0-199 Sentence denotes CFTR is expressed in alveolar macrophages [32], [39] as well as in PBMCs at both the mRNA and protein level [40], [41], and its loss is frequently associated with an augmented inflammatory phenotype.

2_test

Id Subject Object Predicate Lexical cue
22649552-20543983-88306716 43-45 20543983 denotes 32
22649552-16921366-88306717 49-51 16921366 denotes 39
22649552-20102408-88306718 115-117 20102408 denotes 41
T58856 43-45 20543983 denotes 32
T18679 49-51 16921366 denotes 39
T89454 115-117 20102408 denotes 41