PMC:3359311 / 11181-11379 JSONTXT

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    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T3911","span":{"begin":51,"end":55},"obj":"P26993"},{"id":"T3912","span":{"begin":133,"end":138},"obj":"P01584"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Stimulation of PBMCs with P. aeruginosa that lacks exsA (PAO1ΔexsA), a key regulator of type III secretion, produced three-fold less IL-1β compared to the parental PAO1 strain by 24 hours (Fig. 5a)."}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T3616","span":{"begin":51,"end":55},"obj":"Protein"},{"id":"T3617","span":{"begin":108,"end":116},"obj":"Gene_expression"},{"id":"T3618","span":{"begin":128,"end":132},"obj":"Negative_regulation"},{"id":"T3619","span":{"begin":133,"end":138},"obj":"Protein"}],"relations":[{"id":"R3122","pred":"themeOf","subj":"T3617","obj":"T3618"},{"id":"R3123","pred":"themeOf","subj":"T3619","obj":"T3617"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Stimulation of PBMCs with P. aeruginosa that lacks exsA (PAO1ΔexsA), a key regulator of type III secretion, produced three-fold less IL-1β compared to the parental PAO1 strain by 24 hours (Fig. 5a)."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T4305","span":{"begin":51,"end":55},"obj":"Protein"},{"id":"T4306","span":{"begin":57,"end":66},"obj":"Protein"},{"id":"T4307","span":{"begin":133,"end":138},"obj":"Protein"},{"id":"T4308","span":{"begin":164,"end":168},"obj":"Protein"},{"id":"T4309","span":{"begin":45,"end":50},"obj":"Negative_regulation"},{"id":"T4310","span":{"begin":45,"end":50},"obj":"Negative_regulation"},{"id":"T4311","span":{"begin":108,"end":116},"obj":"Gene_expression"}],"relations":[{"id":"R3743","pred":"themeOf","subj":"T4305","obj":"T4309"},{"id":"R3744","pred":"themeOf","subj":"T4306","obj":"T4310"},{"id":"R3745","pred":"themeOf","subj":"T4307","obj":"T4311"}],"text":"Stimulation of PBMCs with P. aeruginosa that lacks exsA (PAO1ΔexsA), a key regulator of type III secretion, produced three-fold less IL-1β compared to the parental PAO1 strain by 24 hours (Fig. 5a)."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T4266","span":{"begin":51,"end":55},"obj":"Protein"},{"id":"T4267","span":{"begin":108,"end":116},"obj":"Gene_expression"},{"id":"T4268","span":{"begin":128,"end":132},"obj":"Negative_regulation"},{"id":"T4269","span":{"begin":133,"end":138},"obj":"Protein"}],"relations":[{"id":"R3719","pred":"themeOf","subj":"T4267","obj":"T4268"},{"id":"R3720","pred":"themeOf","subj":"T4269","obj":"T4267"}],"text":"Stimulation of PBMCs with P. aeruginosa that lacks exsA (PAO1ΔexsA), a key regulator of type III secretion, produced three-fold less IL-1β compared to the parental PAO1 strain by 24 hours (Fig. 5a)."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T4205","span":{"begin":97,"end":106},"obj":"http://purl.obolibrary.org/obo/GO_0046903"}],"text":"Stimulation of PBMCs with P. aeruginosa that lacks exsA (PAO1ΔexsA), a key regulator of type III secretion, produced three-fold less IL-1β compared to the parental PAO1 strain by 24 hours (Fig. 5a)."}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T4077","span":{"begin":0,"end":11},"obj":"NN"},{"id":"T4078","span":{"begin":12,"end":14},"obj":"IN"},{"id":"T4079","span":{"begin":15,"end":20},"obj":"NNS"},{"id":"T4080","span":{"begin":21,"end":25},"obj":"IN"},{"id":"T4081","span":{"begin":26,"end":28},"obj":"NNP"},{"id":"T4082","span":{"begin":29,"end":39},"obj":"NN"},{"id":"T4083","span":{"begin":40,"end":44},"obj":"WDT"},{"id":"T4084","span":{"begin":45,"end":50},"obj":"VBZ"},{"id":"T4085","span":{"begin":51,"end":55},"obj":"NNP"},{"id":"T4086","span":{"begin":56,"end":57},"obj":"-LRB-"},{"id":"T4087","span":{"begin":57,"end":66},"obj":"NNP"},{"id":"T4088","span":{"begin":66,"end":67},"obj":"-RRB-"},{"id":"T4089","span":{"begin":67,"end":68},"obj":","},{"id":"T4090","span":{"begin":69,"end":70},"obj":"DT"},{"id":"T4091","span":{"begin":71,"end":74},"obj":"JJ"},{"id":"T4092","span":{"begin":75,"end":84},"obj":"NN"},{"id":"T4093","span":{"begin":85,"end":87},"obj":"IN"},{"id":"T4094","span":{"begin":88,"end":92},"obj":"NN"},{"id":"T4095","span":{"begin":93,"end":96},"obj":"NNP"},{"id":"T4096","span":{"begin":97,"end":106},"obj":"NN"},{"id":"T4097","span":{"begin":106,"end":107},"obj":","},{"id":"T4098","span":{"begin":108,"end":116},"obj":"VBD"},{"id":"T4099","span":{"begin":117,"end":127},"obj":"JJ"},{"id":"T4100","span":{"begin":128,"end":132},"obj":"RBR"},{"id":"T4101","span":{"begin":133,"end":138},"obj":"JJ"},{"id":"T4102","span":{"begin":139,"end":147},"obj":"VBN"},{"id":"T4103","span":{"begin":148,"end":150},"obj":"TO"},{"id":"T4104","span":{"begin":151,"end":154},"obj":"DT"},{"id":"T4105","span":{"begin":155,"end":163},"obj":"JJ"},{"id":"T4106","span":{"begin":164,"end":168},"obj":"NNP"},{"id":"T4107","span":{"begin":169,"end":175},"obj":"NN"},{"id":"T4108","span":{"begin":176,"end":178},"obj":"IN"},{"id":"T4109","span":{"begin":179,"end":181},"obj":"CD"},{"id":"T4110","span":{"begin":182,"end":187},"obj":"NNS"},{"id":"T4111","span":{"begin":188,"end":189},"obj":"-LRB-"},{"id":"T4112","span":{"begin":189,"end":193},"obj":"NNP"},{"id":"T4113","span":{"begin":194,"end":196},"obj":"CD"},{"id":"T4114","span":{"begin":196,"end":197},"obj":"-RRB-"},{"id":"T4115","span":{"begin":197,"end":198},"obj":"."}],"relations":[{"id":"R3565","pred":"nsubj","subj":"T4077","obj":"T4098"},{"id":"R3566","pred":"prep","subj":"T4078","obj":"T4077"},{"id":"R3567","pred":"pobj","subj":"T4079","obj":"T4078"},{"id":"R3568","pred":"prep","subj":"T4080","obj":"T4079"},{"id":"R3569","pred":"compound","subj":"T4081","obj":"T4082"},{"id":"R3570","pred":"pobj","subj":"T4082","obj":"T4080"},{"id":"R3571","pred":"nsubj","subj":"T4083","obj":"T4084"},{"id":"R3572","pred":"relcl","subj":"T4084","obj":"T4082"},{"id":"R3573","pred":"dobj","subj":"T4085","obj":"T4084"},{"id":"R3574","pred":"punct","subj":"T4086","obj":"T4087"},{"id":"R3575","pred":"appos","subj":"T4087","obj":"T4085"},{"id":"R3576","pred":"punct","subj":"T4088","obj":"T4077"},{"id":"R3577","pred":"punct","subj":"T4089","obj":"T4077"},{"id":"R3578","pred":"det","subj":"T4090","obj":"T4092"},{"id":"R3579","pred":"amod","subj":"T4091","obj":"T4092"},{"id":"R3580","pred":"appos","subj":"T4092","obj":"T4077"},{"id":"R3581","pred":"prep","subj":"T4093","obj":"T4092"},{"id":"R3582","pred":"compound","subj":"T4094","obj":"T4096"},{"id":"R3583","pred":"compound","subj":"T4095","obj":"T4096"},{"id":"R3584","pred":"pobj","subj":"T4096","obj":"T4093"},{"id":"R3585","pred":"punct","subj":"T4097","obj":"T4098"},{"id":"R3586","pred":"ROOT","subj":"T4098","obj":"T4098"},{"id":"R3587","pred":"amod","subj":"T4099","obj":"T4101"},{"id":"R3588","pred":"advmod","subj":"T4100","obj":"T4101"},{"id":"R3589","pred":"amod","subj":"T4101","obj":"T4102"},{"id":"R3590","pred":"prep","subj":"T4102","obj":"T4098"},{"id":"R3591","pred":"prep","subj":"T4103","obj":"T4102"},{"id":"R3592","pred":"det","subj":"T4104","obj":"T4107"},{"id":"R3593","pred":"amod","subj":"T4105","obj":"T4107"},{"id":"R3594","pred":"compound","subj":"T4106","obj":"T4107"},{"id":"R3595","pred":"pobj","subj":"T4107","obj":"T4103"},{"id":"R3596","pred":"prep","subj":"T4108","obj":"T4107"},{"id":"R3597","pred":"nummod","subj":"T4109","obj":"T4110"},{"id":"R3598","pred":"pobj","subj":"T4110","obj":"T4108"},{"id":"R3599","pred":"punct","subj":"T4111","obj":"T4110"},{"id":"R3600","pred":"appos","subj":"T4112","obj":"T4110"},{"id":"R3601","pred":"nummod","subj":"T4113","obj":"T4112"},{"id":"R3602","pred":"punct","subj":"T4114","obj":"T4110"},{"id":"R3603","pred":"punct","subj":"T4115","obj":"T4098"}],"text":"Stimulation of PBMCs with P. aeruginosa that lacks exsA (PAO1ΔexsA), a key regulator of type III secretion, produced three-fold less IL-1β compared to the parental PAO1 strain by 24 hours (Fig. 5a)."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T3794","span":{"begin":0,"end":11},"obj":"NN"},{"id":"T3795","span":{"begin":12,"end":14},"obj":"IN"},{"id":"T3796","span":{"begin":15,"end":20},"obj":"NN"},{"id":"T3797","span":{"begin":21,"end":25},"obj":"IN"},{"id":"T3798","span":{"begin":26,"end":28},"obj":"NNP"},{"id":"T3799","span":{"begin":29,"end":39},"obj":"NN"},{"id":"T3800","span":{"begin":40,"end":44},"obj":"WDT"},{"id":"T3801","span":{"begin":45,"end":50},"obj":"VB"},{"id":"T3802","span":{"begin":51,"end":55},"obj":"NN"},{"id":"T3803","span":{"begin":56,"end":57},"obj":"-LRB-"},{"id":"T3804","span":{"begin":57,"end":66},"obj":"NN"},{"id":"T3805","span":{"begin":66,"end":67},"obj":"-RRB-"},{"id":"T3806","span":{"begin":67,"end":68},"obj":"-COMMA-"},{"id":"T3807","span":{"begin":69,"end":70},"obj":"DT"},{"id":"T3808","span":{"begin":71,"end":74},"obj":"JJ"},{"id":"T3809","span":{"begin":75,"end":84},"obj":"NN"},{"id":"T3810","span":{"begin":85,"end":87},"obj":"IN"},{"id":"T3811","span":{"begin":88,"end":92},"obj":"NN"},{"id":"T3812","span":{"begin":93,"end":96},"obj":"CD"},{"id":"T3813","span":{"begin":97,"end":106},"obj":"NN"},{"id":"T3814","span":{"begin":106,"end":107},"obj":"-COMMA-"},{"id":"T3815","span":{"begin":108,"end":116},"obj":"VB"},{"id":"T3816","span":{"begin":117,"end":127},"obj":"RB"},{"id":"T3817","span":{"begin":128,"end":132},"obj":"JJ"},{"id":"T3818","span":{"begin":133,"end":138},"obj":"NN"},{"id":"T3819","span":{"begin":139,"end":147},"obj":"VB"},{"id":"T3820","span":{"begin":148,"end":150},"obj":"TO"},{"id":"T3821","span":{"begin":151,"end":154},"obj":"DT"},{"id":"T3822","span":{"begin":155,"end":163},"obj":"JJ"},{"id":"T3823","span":{"begin":164,"end":168},"obj":"NN"},{"id":"T3824","span":{"begin":169,"end":175},"obj":"NN"},{"id":"T3825","span":{"begin":176,"end":178},"obj":"IN"},{"id":"T3826","span":{"begin":179,"end":181},"obj":"CD"},{"id":"T3827","span":{"begin":182,"end":187},"obj":"NN"},{"id":"T3828","span":{"begin":188,"end":189},"obj":"-LRB-"},{"id":"T3829","span":{"begin":189,"end":193},"obj":"NNP"},{"id":"T3830","span":{"begin":194,"end":196},"obj":"NN"},{"id":"T3831","span":{"begin":196,"end":197},"obj":"-RRB-"}],"relations":[{"id":"R3290","pred":"arg1Of","subj":"T3794","obj":"T3795"},{"id":"R3291","pred":"arg1Of","subj":"T3794","obj":"T3797"},{"id":"R3292","pred":"arg1Of","subj":"T3794","obj":"T3800"},{"id":"R3293","pred":"arg1Of","subj":"T3794","obj":"T3801"},{"id":"R3294","pred":"arg1Of","subj":"T3794","obj":"T3815"},{"id":"R3295","pred":"arg2Of","subj":"T3796","obj":"T3795"},{"id":"R3296","pred":"arg2Of","subj":"T3799","obj":"T3797"},{"id":"R3297","pred":"arg1Of","subj":"T3799","obj":"T3798"},{"id":"R3298","pred":"arg2Of","subj":"T3802","obj":"T3801"},{"id":"R3299","pred":"arg1Of","subj":"T3802","obj":"T3803"},{"id":"R3300","pred":"arg1Of","subj":"T3802","obj":"T3806"},{"id":"R3301","pred":"arg2Of","subj":"T3804","obj":"T3803"},{"id":"R3302","pred":"arg3Of","subj":"T3805","obj":"T3803"},{"id":"R3303","pred":"arg2Of","subj":"T3809","obj":"T3806"},{"id":"R3304","pred":"arg1Of","subj":"T3809","obj":"T3807"},{"id":"R3305","pred":"arg1Of","subj":"T3809","obj":"T3808"},{"id":"R3306","pred":"arg1Of","subj":"T3809","obj":"T3810"},{"id":"R3307","pred":"arg2Of","subj":"T3813","obj":"T3810"},{"id":"R3308","pred":"arg1Of","subj":"T3813","obj":"T3811"},{"id":"R3309","pred":"arg1Of","subj":"T3813","obj":"T3812"},{"id":"R3310","pred":"arg1Of","subj":"T3815","obj":"T3814"},{"id":"R3311","pred":"arg1Of","subj":"T3815","obj":"T3819"},{"id":"R3312","pred":"arg1Of","subj":"T3815","obj":"T3825"},{"id":"R3313","pred":"arg1Of","subj":"T3817","obj":"T3816"},{"id":"R3314","pred":"arg2Of","subj":"T3818","obj":"T3815"},{"id":"R3315","pred":"arg1Of","subj":"T3818","obj":"T3817"},{"id":"R3316","pred":"arg2Of","subj":"T3820","obj":"T3819"},{"id":"R3317","pred":"arg2Of","subj":"T3824","obj":"T3820"},{"id":"R3318","pred":"arg1Of","subj":"T3824","obj":"T3821"},{"id":"R3319","pred":"arg1Of","subj":"T3824","obj":"T3822"},{"id":"R3320","pred":"arg1Of","subj":"T3824","obj":"T3823"},{"id":"R3321","pred":"arg2Of","subj":"T3827","obj":"T3825"},{"id":"R3322","pred":"arg1Of","subj":"T3827","obj":"T3826"},{"id":"R3323","pred":"arg1Of","subj":"T3827","obj":"T3828"},{"id":"R3324","pred":"arg2Of","subj":"T3830","obj":"T3828"},{"id":"R3325","pred":"arg1Of","subj":"T3830","obj":"T3829"},{"id":"R3326","pred":"arg3Of","subj":"T3831","obj":"T3828"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"Stimulation of PBMCs with P. aeruginosa that lacks exsA (PAO1ΔexsA), a key regulator of type III secretion, produced three-fold less IL-1β compared to the parental PAO1 strain by 24 hours (Fig. 5a)."}

    sentences

    {"project":"sentences","denotations":[{"id":"T3634","span":{"begin":0,"end":198},"obj":"Sentence"},{"id":"T81","span":{"begin":0,"end":198},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Stimulation of PBMCs with P. aeruginosa that lacks exsA (PAO1ΔexsA), a key regulator of type III secretion, produced three-fold less IL-1β compared to the parental PAO1 strain by 24 hours (Fig. 5a)."}