PMC:3342329 / 943-1083 JSONTXT

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    testone

    {"project":"testone","denotations":[{"id":"T54","span":{"begin":111,"end":121},"obj":"Gene_expression"},{"id":"T53","span":{"begin":26,"end":33},"obj":"Phosphorylation"}],"text":"otein expression, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bc"}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T642","span":{"begin":111,"end":121},"obj":"Gene_expression"}],"text":"otein expression, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bc"}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T769","span":{"begin":111,"end":121},"obj":"Gene_expression"}],"text":"otein expression, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bc"}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T430","span":{"begin":135,"end":137},"obj":"IN"},{"id":"T429","span":{"begin":130,"end":134},"obj":"JJ"},{"id":"T428","span":{"begin":128,"end":129},"obj":"-COMMA-"},{"id":"T427","span":{"begin":122,"end":128},"obj":"NN"},{"id":"T426","span":{"begin":111,"end":121},"obj":"NN"},{"id":"T425","span":{"begin":103,"end":110},"obj":"NN"},{"id":"T424","span":{"begin":94,"end":102},"obj":"NN"},{"id":"T423","span":{"begin":90,"end":93},"obj":"DT"},{"id":"T422","span":{"begin":82,"end":89},"obj":"IN"},{"id":"T421","span":{"begin":80,"end":81},"obj":"-COMMA-"},{"id":"T420","span":{"begin":72,"end":80},"obj":"VB"},{"id":"T419","span":{"begin":68,"end":71},"obj":"VB"},{"id":"T418","span":{"begin":66,"end":67},"obj":"-COMMA-"},{"id":"T417","span":{"begin":63,"end":66},"obj":"NN"},{"id":"T416","span":{"begin":59,"end":62},"obj":"CC"},{"id":"T415","span":{"begin":57,"end":58},"obj":"-COMMA-"},{"id":"T414","span":{"begin":53,"end":57},"obj":"NN"},{"id":"T413","span":{"begin":45,"end":52},"obj":"VB"},{"id":"T412","span":{"begin":43,"end":44},"obj":"-COMMA-"},{"id":"T411","span":{"begin":34,"end":43},"obj":"NN"},{"id":"T410","span":{"begin":26,"end":33},"obj":"VB"},{"id":"T409","span":{"begin":23,"end":25},"obj":"IN"},{"id":"T408","span":{"begin":18,"end":22},"obj":"JJ"},{"id":"T407","span":{"begin":16,"end":17},"obj":"-COMMA-"},{"id":"T406","span":{"begin":6,"end":16},"obj":"NN"}],"relations":[{"id":"R187","pred":"arg1Of","subj":"T406","obj":"T407"},{"id":"R188","pred":"arg1Of","subj":"T406","obj":"T409"},{"id":"R189","pred":"arg1Of","subj":"T406","obj":"T419"},{"id":"R190","pred":"arg2Of","subj":"T406","obj":"T420"},{"id":"R191","pred":"arg1Of","subj":"T409","obj":"T408"},{"id":"R192","pred":"arg2Of","subj":"T411","obj":"T410"},{"id":"R193","pred":"arg2Of","subj":"T411","obj":"T413"},{"id":"R194","pred":"arg1Of","subj":"T411","obj":"T416"},{"id":"R195","pred":"arg1Of","subj":"T413","obj":"T412"},{"id":"R196","pred":"arg3Of","subj":"T414","obj":"T413"},{"id":"R197","pred":"arg2Of","subj":"T416","obj":"T409"},{"id":"R198","pred":"arg1Of","subj":"T416","obj":"T415"},{"id":"R199","pred":"arg2Of","subj":"T417","obj":"T416"},{"id":"R200","pred":"arg1Of","subj":"T420","obj":"T418"},{"id":"R201","pred":"arg2Of","subj":"T420","obj":"T419"},{"id":"R202","pred":"arg1Of","subj":"T420","obj":"T421"},{"id":"R203","pred":"arg1Of","subj":"T420","obj":"T422"},{"id":"R204","pred":"arg1Of","subj":"T427","obj":"T423"},{"id":"R205","pred":"arg1Of","subj":"T427","obj":"T424"},{"id":"R206","pred":"arg1Of","subj":"T427","obj":"T425"},{"id":"R207","pred":"arg1Of","subj":"T427","obj":"T426"},{"id":"R208","pred":"arg1Of","subj":"T427","obj":"T428"},{"id":"R209","pred":"arg1Of","subj":"T427","obj":"T430"},{"id":"R212","pred":"arg1Of","subj":"T430","obj":"T429"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"otein expression, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bc"}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T551","span":{"begin":34,"end":43},"obj":"http://www.uniprot.org/uniprot/P42574"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"otein expression, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bc"}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T582","span":{"begin":111,"end":121},"obj":"Gene_expression"}],"text":"otein expression, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bc"}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T819","span":{"begin":26,"end":58},"obj":"Protein_catabolism"},{"id":"T816","span":{"begin":103,"end":121},"obj":"Gene_expression"},{"id":"T813","span":{"begin":103,"end":110},"obj":"Protein"},{"id":"T805","span":{"begin":53,"end":57},"obj":"Protein"},{"id":"T799","span":{"begin":63,"end":66},"obj":"Protein"},{"id":"T795","span":{"begin":26,"end":58},"obj":"Protein"}],"relations":[{"id":"R421","pred":"themeOf","subj":"T795","obj":"T819"},{"id":"R424","pred":"themeOf","subj":"T813","obj":"T816"}],"text":"otein expression, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bc"}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T1014","span":{"begin":135,"end":137},"obj":"IN"},{"id":"T1013","span":{"begin":130,"end":134},"obj":"JJ"},{"id":"T1012","span":{"begin":128,"end":129},"obj":","},{"id":"T1011","span":{"begin":122,"end":128},"obj":"NNS"},{"id":"T1010","span":{"begin":111,"end":121},"obj":"NN"},{"id":"T1009","span":{"begin":103,"end":110},"obj":"NN"},{"id":"T1008","span":{"begin":94,"end":102},"obj":"NN"},{"id":"T1007","span":{"begin":90,"end":93},"obj":"DT"},{"id":"T1006","span":{"begin":82,"end":89},"obj":"IN"},{"id":"T1005","span":{"begin":80,"end":81},"obj":","},{"id":"T1004","span":{"begin":72,"end":80},"obj":"VBN"},{"id":"T1003","span":{"begin":68,"end":71},"obj":"VBD"},{"id":"T1002","span":{"begin":66,"end":67},"obj":","},{"id":"T1001","span":{"begin":63,"end":66},"obj":"NNP"},{"id":"T1000","span":{"begin":59,"end":62},"obj":"CC"},{"id":"T999","span":{"begin":57,"end":58},"obj":","},{"id":"T998","span":{"begin":53,"end":57},"obj":"NNP"},{"id":"T997","span":{"begin":45,"end":52},"obj":"JJ"},{"id":"T996","span":{"begin":43,"end":44},"obj":","},{"id":"T995","span":{"begin":34,"end":43},"obj":"JJ"},{"id":"T994","span":{"begin":26,"end":33},"obj":"JJ"},{"id":"T993","span":{"begin":23,"end":25},"obj":"IN"},{"id":"T992","span":{"begin":18,"end":22},"obj":"JJ"},{"id":"T991","span":{"begin":16,"end":17},"obj":","},{"id":"T990","span":{"begin":6,"end":16},"obj":"NN"}],"relations":[{"id":"R597","pred":"amod","subj":"T992","obj":"T993"},{"id":"R599","pred":"nsubjpass","subj":"T994","obj":"T1004"},{"id":"R600","pred":"nsubjpass","subj":"T995","obj":"T1004"},{"id":"R601","pred":"punct","subj":"T996","obj":"T998"},{"id":"R602","pred":"compound","subj":"T997","obj":"T998"},{"id":"R603","pred":"appos","subj":"T998","obj":"T995"},{"id":"R604","pred":"punct","subj":"T999","obj":"T998"},{"id":"R605","pred":"cc","subj":"T1000","obj":"T998"},{"id":"R606","pred":"conj","subj":"T1001","obj":"T998"},{"id":"R607","pred":"punct","subj":"T1002","obj":"T1004"},{"id":"R608","pred":"auxpass","subj":"T1003","obj":"T1004"},{"id":"R609","pred":"ROOT","subj":"T1004","obj":"T1004"},{"id":"R610","pred":"punct","subj":"T1005","obj":"T1004"},{"id":"R612","pred":"det","subj":"T1007","obj":"T1011"},{"id":"R613","pred":"compound","subj":"T1008","obj":"T1009"},{"id":"R614","pred":"compound","subj":"T1009","obj":"T1011"},{"id":"R615","pred":"compound","subj":"T1010","obj":"T1011"},{"id":"R617","pred":"punct","subj":"T1012","obj":"T1011"},{"id":"R618","pred":"amod","subj":"T1013","obj":"T1014"},{"id":"R619","pred":"prep","subj":"T1014","obj":"T1011"}],"text":"otein expression, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bc"}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T679","span":{"begin":111,"end":121},"obj":"Gene_expression"},{"id":"T678","span":{"begin":72,"end":80},"obj":"Positive_regulation"},{"id":"T677","span":{"begin":72,"end":80},"obj":"Positive_regulation"},{"id":"T676","span":{"begin":6,"end":16},"obj":"Gene_expression"},{"id":"T675","span":{"begin":6,"end":16},"obj":"Gene_expression"},{"id":"T673","span":{"begin":63,"end":66},"obj":"Protein"},{"id":"T672","span":{"begin":53,"end":57},"obj":"Protein"}],"relations":[{"id":"R365","pred":"themeOf","subj":"T673","obj":"T676"},{"id":"R367","pred":"themeOf","subj":"T675","obj":"T677"},{"id":"R368","pred":"themeOf","subj":"T676","obj":"T678"}],"text":"otein expression, such as cleaved caspase-3, cleaved PARP, and Bax, was elevated, whereas the survival protein expression levels, such as Bc"}