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PMC:3342329 / 860-1105 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T101 228-234 Protein denotes C-IAP1
T100 44-48 Protein denotes CCR5
T72 228-234 Protein denotes C-IAP1
T71 44-48 Protein denotes CCR5

testone

Id Subject Object Predicate Lexical cue
T36 228-234 Protein denotes C-IAP1
T35 44-48 Protein denotes CCR5
T54 194-204 Gene_expression denotes expression
T53 109-116 Phosphorylation denotes cleaved
R8 T36 T54 themeOf C-IAP1,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T642 194-204 Gene_expression denotes expression
T628 228-234 Protein denotes C-IAP1
T627 44-48 Protein denotes CCR5
R344 T628 T642 themeOf C-IAP1,expression

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T769 194-204 Gene_expression denotes expression
T754 228-234 Protein denotes C-IAP1
T753 44-48 Protein denotes CCR5
R413 T754 T769 themeOf C-IAP1,expression

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T435 236-239 VB denotes was
T434 234-235 -COMMA- denotes ,
T433 228-234 NN denotes C-IAP1
T432 226-227 -COMMA- denotes ,
T431 221-226 NN denotes Bcl-2
T430 218-220 IN denotes as
T429 213-217 JJ denotes such
T428 211-212 -COMMA- denotes ,
T427 205-211 NN denotes levels
T426 194-204 NN denotes expression
T425 186-193 NN denotes protein
T424 177-185 NN denotes survival
T423 173-176 DT denotes the
T422 165-172 IN denotes whereas
T421 163-164 -COMMA- denotes ,
T420 155-163 VB denotes elevated
T419 151-154 VB denotes was
T418 149-150 -COMMA- denotes ,
T417 146-149 NN denotes Bax
T416 142-145 CC denotes and
T415 140-141 -COMMA- denotes ,
T414 136-140 NN denotes PARP
T413 128-135 VB denotes cleaved
T412 126-127 -COMMA- denotes ,
T411 117-126 NN denotes caspase-3
T410 109-116 VB denotes cleaved
T409 106-108 IN denotes as
T408 101-105 JJ denotes such
T407 99-100 -COMMA- denotes ,
T406 89-99 NN denotes expression
T405 81-88 NN denotes protein
T404 71-80 JJ denotes apoptotic
T403 64-70 NN denotes target
T402 58-63 NN denotes NF-κB
T401 52-56 NN denotes mice
T400 44-51 JJ denotes CCR5+/+
T399 41-43 IN denotes of
T398 33-40 NN denotes tissues
T397 24-32 NN denotes melanoma
T396 21-23 TO denotes to
T395 12-20 VB denotes compared
T394 7-11 NN denotes mice
R177 T396 T395 arg2Of to,compared
R178 T398 T396 arg2Of tissues,to
R179 T398 T397 arg1Of tissues,melanoma
R180 T398 T399 arg1Of tissues,of
R181 T401 T399 arg2Of mice,of
R182 T401 T400 arg1Of mice,CCR5+/+
R183 T406 T402 arg1Of expression,NF-κB
R184 T406 T403 arg1Of expression,target
R185 T406 T404 arg1Of expression,apoptotic
R186 T406 T405 arg1Of expression,protein
R187 T406 T407 arg1Of expression,","
R188 T406 T409 arg1Of expression,as
R189 T406 T419 arg1Of expression,was
R190 T406 T420 arg2Of expression,elevated
R191 T409 T408 arg1Of as,such
R192 T411 T410 arg2Of caspase-3,cleaved
R193 T411 T413 arg2Of caspase-3,cleaved
R194 T411 T416 arg1Of caspase-3,and
R195 T413 T412 arg1Of cleaved,","
R196 T414 T413 arg3Of PARP,cleaved
R197 T416 T409 arg2Of and,as
R198 T416 T415 arg1Of and,","
R199 T417 T416 arg2Of Bax,and
R200 T420 T418 arg1Of elevated,","
R201 T420 T419 arg2Of elevated,was
R202 T420 T421 arg1Of elevated,","
R203 T420 T422 arg1Of elevated,whereas
R204 T427 T423 arg1Of levels,the
R205 T427 T424 arg1Of levels,survival
R206 T427 T425 arg1Of levels,protein
R207 T427 T426 arg1Of levels,expression
R208 T427 T428 arg1Of levels,","
R209 T427 T430 arg1Of levels,as
R210 T427 T435 arg1Of levels,was
R212 T430 T429 arg1Of as,such
R213 T431 T430 arg2Of Bcl-2,as
R214 T431 T432 arg1Of Bcl-2,","
R215 T433 T432 arg2Of C-IAP1,","

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T178 228-234 Protein denotes C-IAP1
T177 44-48 Protein denotes CCR5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T552 228-234 http://www.uniprot.org/uniprot/Q13490 denotes C-IAP1
T551 117-126 http://www.uniprot.org/uniprot/P42574 denotes caspase-3
T541 44-48 http://www.uniprot.org/uniprot/P51681 denotes CCR5

UBERON-AE

Id Subject Object Predicate Lexical cue
T114 33-40 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues

simple1

Id Subject Object Predicate Lexical cue
T251 228-234 Protein denotes C-IAP1
T250 44-48 Protein denotes CCR5

DLUT931

Id Subject Object Predicate Lexical cue
T582 194-204 Gene_expression denotes expression
T568 228-234 Protein denotes C-IAP1
T567 44-48 Protein denotes CCR5
R320 T568 T582 themeOf C-IAP1,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T819 109-141 Protein_catabolism denotes cleaved caspase-3, cleaved PARP,
T816 186-204 Gene_expression denotes protein expression
T813 186-193 Protein denotes protein
T811 221-226 Protein denotes Bcl-2
T810 58-63 Protein denotes NF-κB
T808 52-56 Protein denotes mice
T806 228-235 Protein denotes C-IAP1,
T805 136-140 Protein denotes PARP
T801 7-11 Protein denotes mice
T799 146-149 Protein denotes Bax
T795 109-141 Protein denotes cleaved caspase-3, cleaved PARP,
T782 81-88 Protein denotes protein
R421 T795 T819 themeOf "cleaved caspase-3, cleaved PARP,","cleaved caspase-3, cleaved PARP,"
R424 T813 T816 themeOf protein,protein expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1019 236-239 VBD denotes was
T1018 234-235 , denotes ,
T1017 228-234 NNP denotes C-IAP1
T1016 226-227 , denotes ,
T1015 221-226 NN denotes Bcl-2
T1014 218-220 IN denotes as
T1013 213-217 JJ denotes such
T1012 211-212 , denotes ,
T1011 205-211 NNS denotes levels
T1010 194-204 NN denotes expression
T1009 186-193 NN denotes protein
T1008 177-185 NN denotes survival
T1007 173-176 DT denotes the
T1006 165-172 IN denotes whereas
T1005 163-164 , denotes ,
T1004 155-163 VBN denotes elevated
T1003 151-154 VBD denotes was
T1002 149-150 , denotes ,
T1001 146-149 NNP denotes Bax
T1000 142-145 CC denotes and
T999 140-141 , denotes ,
T998 136-140 NNP denotes PARP
T997 128-135 JJ denotes cleaved
T996 126-127 , denotes ,
T995 117-126 JJ denotes caspase-3
T994 109-116 JJ denotes cleaved
T993 106-108 IN denotes as
T992 101-105 JJ denotes such
T991 99-100 , denotes ,
T990 89-99 NN denotes expression
T989 81-88 NN denotes protein
T988 71-80 JJ denotes apoptotic
T987 64-70 NN denotes target
T986 58-63 JJ denotes NF-κB
T985 56-57 . denotes .
T984 52-56 NNS denotes mice
T983 50-51 NN denotes +
T982 49-50 NN denotes /
T981 48-49 CD denotes +
T980 44-48 CD denotes CCR5
T979 41-43 IN denotes of
T978 33-40 NNS denotes tissues
T977 24-32 VB denotes melanoma
T976 21-23 TO denotes to
T975 12-20 VBN denotes compared
T974 7-11 NNS denotes mice
T973 5-6 NN denotes −
T972 4-5 NN denotes /
T971 3-4 CD denotes −
R576 T971 T974 nummod −,mice
R577 T972 T974 compound /,mice
R578 T973 T974 compound −,mice
R581 T976 T975 prep to,compared
R582 T977 T978 compound melanoma,tissues
R583 T978 T976 pobj tissues,to
R584 T979 T978 prep of,tissues
R585 T980 T984 nummod CCR5,mice
R586 T981 T984 nummod +,mice
R587 T982 T984 amod /,mice
R588 T983 T984 amod +,mice
R589 T984 T979 pobj mice,of
R591 T986 T987 amod NF-κB,target
R592 T987 T1004 nsubjpass target,elevated
R593 T988 T990 amod apoptotic,expression
R594 T989 T990 compound protein,expression
R595 T990 T987 appos expression,target
R596 T991 T987 punct ",",target
R597 T992 T993 amod such,as
R598 T993 T987 prep as,target
R599 T994 T1004 nsubjpass cleaved,elevated
R600 T995 T1004 nsubjpass caspase-3,elevated
R601 T996 T998 punct ",",PARP
R602 T997 T998 compound cleaved,PARP
R603 T998 T995 appos PARP,caspase-3
R604 T999 T998 punct ",",PARP
R605 T1000 T998 cc and,PARP
R606 T1001 T998 conj Bax,PARP
R607 T1002 T1004 punct ",",elevated
R608 T1003 T1004 auxpass was,elevated
R609 T1004 T1004 ROOT elevated,elevated
R610 T1005 T1004 punct ",",elevated
R612 T1007 T1011 det the,levels
R613 T1008 T1009 compound survival,protein
R614 T1009 T1011 compound protein,levels
R615 T1010 T1011 compound expression,levels
R617 T1012 T1011 punct ",",levels
R618 T1013 T1014 amod such,as
R619 T1014 T1011 prep as,levels
R620 T1015 T1014 pobj Bcl-2,as
R621 T1016 T1015 punct ",",Bcl-2
R622 T1017 T1015 conj C-IAP1,Bcl-2

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T679 194-204 Gene_expression denotes expression
T678 155-163 Positive_regulation denotes elevated
T677 155-163 Positive_regulation denotes elevated
T676 89-99 Gene_expression denotes expression
T675 89-99 Gene_expression denotes expression
T674 221-234 Protein denotes Bcl-2, C-IAP1
T673 146-149 Protein denotes Bax
T672 136-140 Protein denotes PARP
T671 58-63 Protein denotes NF-κB
R364 T671 T675 themeOf NF-κB,expression
R365 T673 T676 themeOf Bax,expression
R366 T674 T679 themeOf "Bcl-2, C-IAP1",expression
R367 T675 T677 themeOf expression,elevated
R368 T676 T678 themeOf expression,elevated