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PMC:3342329 / 855-1140 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T99 4-8 Protein denotes CCR5
T102 245-254 Negative_regulation denotes decreased
T101 233-239 Protein denotes C-IAP1
T100 49-53 Protein denotes CCR5
T72 233-239 Protein denotes C-IAP1
T71 49-53 Protein denotes CCR5
T70 4-8 Protein denotes CCR5

testone

Id Subject Object Predicate Lexical cue
T36 233-239 Protein denotes C-IAP1
T35 49-53 Protein denotes CCR5
T34 4-8 Protein denotes CCR5
T55 245-254 Negative_regulation denotes decreased
T54 199-209 Gene_expression denotes expression
T53 114-121 Phosphorylation denotes cleaved
R7 T36 T55 themeOf C-IAP1,decreased
R8 T36 T54 themeOf C-IAP1,expression
R13 T54 T55 themeOf expression,decreased

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T643 245-254 Negative_regulation denotes decreased
T642 199-209 Gene_expression denotes expression
T628 233-239 Protein denotes C-IAP1
T627 49-53 Protein denotes CCR5
T626 4-8 Protein denotes CCR5
R344 T628 T642 themeOf C-IAP1,expression
R345 T628 T643 themeOf C-IAP1,decreased

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T769 199-209 Gene_expression denotes expression
T768 245-254 Negative_regulation denotes decreased
T754 233-239 Protein denotes C-IAP1
T753 49-53 Protein denotes CCR5
T752 4-8 Protein denotes CCR5
R413 T754 T769 themeOf C-IAP1,expression
R414 T754 T768 themeOf C-IAP1,decreased
R418 T769 T768 themeOf expression,decreased

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T441 279-281 IN denotes of
T440 271-278 NN denotes tissues
T439 262-270 NN denotes melanoma
T438 258-261 DT denotes the
T437 255-257 IN denotes in
T436 245-254 VB denotes decreased
T435 241-244 VB denotes was
T434 239-240 -COMMA- denotes ,
T433 233-239 NN denotes C-IAP1
T432 231-232 -COMMA- denotes ,
T431 226-231 NN denotes Bcl-2
T430 223-225 IN denotes as
T429 218-222 JJ denotes such
T428 216-217 -COMMA- denotes ,
T427 210-216 NN denotes levels
T426 199-209 NN denotes expression
T425 191-198 NN denotes protein
T424 182-190 NN denotes survival
T423 178-181 DT denotes the
T422 170-177 IN denotes whereas
T421 168-169 -COMMA- denotes ,
T420 160-168 VB denotes elevated
T419 156-159 VB denotes was
T418 154-155 -COMMA- denotes ,
T417 151-154 NN denotes Bax
T416 147-150 CC denotes and
T415 145-146 -COMMA- denotes ,
T414 141-145 NN denotes PARP
T413 133-140 VB denotes cleaved
T412 131-132 -COMMA- denotes ,
T411 122-131 NN denotes caspase-3
T410 114-121 VB denotes cleaved
T409 111-113 IN denotes as
T408 106-110 JJ denotes such
T407 104-105 -COMMA- denotes ,
T406 94-104 NN denotes expression
T405 86-93 NN denotes protein
T404 76-85 JJ denotes apoptotic
T403 69-75 NN denotes target
T402 63-68 NN denotes NF-κB
T401 57-61 NN denotes mice
T400 49-56 JJ denotes CCR5+/+
T399 46-48 IN denotes of
T398 38-45 NN denotes tissues
T397 29-37 NN denotes melanoma
T396 26-28 TO denotes to
T395 17-25 VB denotes compared
T394 12-16 NN denotes mice
T393 4-11 NN denotes CCR5−/−
T392 1-3 IN denotes of
R175 T394 T392 arg2Of mice,of
R176 T394 T393 arg1Of mice,CCR5−/−
R177 T396 T395 arg2Of to,compared
R178 T398 T396 arg2Of tissues,to
R179 T398 T397 arg1Of tissues,melanoma
R180 T398 T399 arg1Of tissues,of
R181 T401 T399 arg2Of mice,of
R182 T401 T400 arg1Of mice,CCR5+/+
R183 T406 T402 arg1Of expression,NF-κB
R184 T406 T403 arg1Of expression,target
R185 T406 T404 arg1Of expression,apoptotic
R186 T406 T405 arg1Of expression,protein
R187 T406 T407 arg1Of expression,","
R188 T406 T409 arg1Of expression,as
R189 T406 T419 arg1Of expression,was
R190 T406 T420 arg2Of expression,elevated
R191 T409 T408 arg1Of as,such
R192 T411 T410 arg2Of caspase-3,cleaved
R193 T411 T413 arg2Of caspase-3,cleaved
R194 T411 T416 arg1Of caspase-3,and
R195 T413 T412 arg1Of cleaved,","
R196 T414 T413 arg3Of PARP,cleaved
R197 T416 T409 arg2Of and,as
R198 T416 T415 arg1Of and,","
R199 T417 T416 arg2Of Bax,and
R200 T420 T418 arg1Of elevated,","
R201 T420 T419 arg2Of elevated,was
R202 T420 T421 arg1Of elevated,","
R203 T420 T422 arg1Of elevated,whereas
R204 T427 T423 arg1Of levels,the
R205 T427 T424 arg1Of levels,survival
R206 T427 T425 arg1Of levels,protein
R207 T427 T426 arg1Of levels,expression
R208 T427 T428 arg1Of levels,","
R209 T427 T430 arg1Of levels,as
R210 T427 T435 arg1Of levels,was
R211 T427 T436 arg2Of levels,decreased
R212 T430 T429 arg1Of as,such
R213 T431 T430 arg2Of Bcl-2,as
R214 T431 T432 arg1Of Bcl-2,","
R215 T433 T432 arg2Of C-IAP1,","
R216 T436 T422 arg2Of decreased,whereas
R217 T436 T434 arg1Of decreased,","
R218 T436 T435 arg2Of decreased,was
R219 T436 T437 arg1Of decreased,in
R220 T440 T437 arg2Of tissues,in
R221 T440 T438 arg1Of tissues,the
R222 T440 T439 arg1Of tissues,melanoma
R223 T440 T441 arg1Of tissues,of

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T178 233-239 Protein denotes C-IAP1
T177 49-53 Protein denotes CCR5
T176 4-8 Protein denotes CCR5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T552 233-239 http://www.uniprot.org/uniprot/Q13490 denotes C-IAP1
T551 122-131 http://www.uniprot.org/uniprot/P42574 denotes caspase-3
T541 49-53 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T540 4-8 http://www.uniprot.org/uniprot/P51681 denotes CCR5

UBERON-AE

Id Subject Object Predicate Lexical cue
T115 271-278 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues
T114 38-45 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues

simple1

Id Subject Object Predicate Lexical cue
T251 233-239 Protein denotes C-IAP1
T250 49-53 Protein denotes CCR5
T249 4-8 Protein denotes CCR5

DLUT931

Id Subject Object Predicate Lexical cue
T583 245-254 Negative_regulation denotes decreased
T582 199-209 Gene_expression denotes expression
T568 233-239 Protein denotes C-IAP1
T567 49-53 Protein denotes CCR5
T566 4-8 Protein denotes CCR5
R320 T568 T582 themeOf C-IAP1,expression
R326 T582 T583 themeOf expression,decreased

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T819 114-146 Protein_catabolism denotes cleaved caspase-3, cleaved PARP,
T816 191-209 Gene_expression denotes protein expression
T813 191-198 Protein denotes protein
T811 226-231 Protein denotes Bcl-2
T810 63-68 Protein denotes NF-κB
T808 57-61 Protein denotes mice
T806 233-240 Protein denotes C-IAP1,
T805 141-145 Protein denotes PARP
T801 12-16 Protein denotes mice
T799 151-154 Protein denotes Bax
T795 114-146 Protein denotes cleaved caspase-3, cleaved PARP,
T782 86-93 Protein denotes protein
R421 T795 T819 themeOf "cleaved caspase-3, cleaved PARP,","cleaved caspase-3, cleaved PARP,"
R424 T813 T816 themeOf protein,protein expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1025 279-281 IN denotes of
T1024 271-278 NNS denotes tissues
T1023 262-270 NN denotes melanoma
T1022 258-261 DT denotes the
T1021 255-257 IN denotes in
T1020 245-254 VBN denotes decreased
T1019 241-244 VBD denotes was
T1018 239-240 , denotes ,
T1017 233-239 NNP denotes C-IAP1
T1016 231-232 , denotes ,
T1015 226-231 NN denotes Bcl-2
T1014 223-225 IN denotes as
T1013 218-222 JJ denotes such
T1012 216-217 , denotes ,
T1011 210-216 NNS denotes levels
T1010 199-209 NN denotes expression
T1009 191-198 NN denotes protein
T1008 182-190 NN denotes survival
T1007 178-181 DT denotes the
T1006 170-177 IN denotes whereas
T1005 168-169 , denotes ,
T1004 160-168 VBN denotes elevated
T1003 156-159 VBD denotes was
T1002 154-155 , denotes ,
T1001 151-154 NNP denotes Bax
T1000 147-150 CC denotes and
T999 145-146 , denotes ,
T998 141-145 NNP denotes PARP
T997 133-140 JJ denotes cleaved
T996 131-132 , denotes ,
T995 122-131 JJ denotes caspase-3
T994 114-121 JJ denotes cleaved
T993 111-113 IN denotes as
T992 106-110 JJ denotes such
T991 104-105 , denotes ,
T990 94-104 NN denotes expression
T989 86-93 NN denotes protein
T988 76-85 JJ denotes apoptotic
T987 69-75 NN denotes target
T986 63-68 JJ denotes NF-κB
T985 61-62 . denotes .
T984 57-61 NNS denotes mice
T983 55-56 NN denotes +
T982 54-55 NN denotes /
T981 53-54 CD denotes +
T980 49-53 CD denotes CCR5
T979 46-48 IN denotes of
T978 38-45 NNS denotes tissues
T977 29-37 VB denotes melanoma
T976 26-28 TO denotes to
T975 17-25 VBN denotes compared
T974 12-16 NNS denotes mice
T973 10-11 NN denotes −
T972 9-10 NN denotes /
T971 8-9 CD denotes −
T970 4-8 CD denotes CCR5
T969 1-3 IN denotes of
R575 T970 T974 nummod CCR5,mice
R576 T971 T974 nummod −,mice
R577 T972 T974 compound /,mice
R578 T973 T974 compound −,mice
R579 T974 T969 pobj mice,of
R581 T976 T975 prep to,compared
R582 T977 T978 compound melanoma,tissues
R583 T978 T976 pobj tissues,to
R584 T979 T978 prep of,tissues
R585 T980 T984 nummod CCR5,mice
R586 T981 T984 nummod +,mice
R587 T982 T984 amod /,mice
R588 T983 T984 amod +,mice
R589 T984 T979 pobj mice,of
R591 T986 T987 amod NF-κB,target
R592 T987 T1004 nsubjpass target,elevated
R593 T988 T990 amod apoptotic,expression
R594 T989 T990 compound protein,expression
R595 T990 T987 appos expression,target
R596 T991 T987 punct ",",target
R597 T992 T993 amod such,as
R598 T993 T987 prep as,target
R599 T994 T1004 nsubjpass cleaved,elevated
R600 T995 T1004 nsubjpass caspase-3,elevated
R601 T996 T998 punct ",",PARP
R602 T997 T998 compound cleaved,PARP
R603 T998 T995 appos PARP,caspase-3
R604 T999 T998 punct ",",PARP
R605 T1000 T998 cc and,PARP
R606 T1001 T998 conj Bax,PARP
R607 T1002 T1004 punct ",",elevated
R608 T1003 T1004 auxpass was,elevated
R609 T1004 T1004 ROOT elevated,elevated
R610 T1005 T1004 punct ",",elevated
R611 T1006 T1020 mark whereas,decreased
R612 T1007 T1011 det the,levels
R613 T1008 T1009 compound survival,protein
R614 T1009 T1011 compound protein,levels
R615 T1010 T1011 compound expression,levels
R616 T1011 T1020 nsubjpass levels,decreased
R617 T1012 T1011 punct ",",levels
R618 T1013 T1014 amod such,as
R619 T1014 T1011 prep as,levels
R620 T1015 T1014 pobj Bcl-2,as
R621 T1016 T1015 punct ",",Bcl-2
R622 T1017 T1015 conj C-IAP1,Bcl-2
R623 T1018 T1020 punct ",",decreased
R624 T1019 T1020 auxpass was,decreased
R625 T1020 T1004 advcl decreased,elevated
R626 T1021 T1020 prep in,decreased
R627 T1022 T1024 det the,tissues
R629 T1023 T1024 compound melanoma,tissues
R630 T1024 T1021 pobj tissues,in
R631 T1025 T1024 prep of,tissues

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T680 245-254 Negative_regulation denotes decreased
T679 199-209 Gene_expression denotes expression
T678 160-168 Positive_regulation denotes elevated
T677 160-168 Positive_regulation denotes elevated
T676 94-104 Gene_expression denotes expression
T675 94-104 Gene_expression denotes expression
T674 226-239 Protein denotes Bcl-2, C-IAP1
T673 151-154 Protein denotes Bax
T672 141-145 Protein denotes PARP
T671 63-68 Protein denotes NF-κB
R364 T671 T675 themeOf NF-κB,expression
R365 T673 T676 themeOf Bax,expression
R366 T674 T679 themeOf "Bcl-2, C-IAP1",expression
R367 T675 T677 themeOf expression,elevated
R368 T676 T678 themeOf expression,elevated
R369 T679 T680 themeOf expression,decreased