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PMC:3342329 / 723-955 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T99 136-140 Protein denotes CCR5
T100 181-185 Protein denotes CCR5
T98 76-91 Phosphorylation denotes phosphorylation
T97 62-72 Negative_regulation denotes inhibition
T96 42-49 Entity denotes nucleus
T95 29-32 Protein denotes p65
T94 21-24 Protein denotes p50
T93 4-17 Localization denotes translocation
T71 181-185 Protein denotes CCR5
T70 136-140 Protein denotes CCR5
T69 29-32 Protein denotes p65
T68 21-24 Protein denotes p50
R19 T94 T93 themeOf p50,translocation
R20 T95 T93 themeOf p65,translocation
R21 T96 T93 locationOf nucleus,translocation
R22 T98 T97 themeOf phosphorylation,inhibition

testone

Id Subject Object Predicate Lexical cue
T35 181-185 Protein denotes CCR5
T34 136-140 Protein denotes CCR5
T33 29-32 Protein denotes p65
T32 21-24 Protein denotes p50
T52 76-91 Phosphorylation denotes phosphorylation
T51 42-49 Entity denotes nucleus
T50 4-17 Localization denotes translocation
R5 T32 T50 themeOf p50,translocation
R6 T33 T50 themeOf p65,translocation
R12 T51 T50 locationOf nucleus,translocation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T641 4-17 Localization denotes translocation
T627 181-185 Protein denotes CCR5
T626 136-140 Protein denotes CCR5
T625 29-32 Protein denotes p65
T624 21-24 Protein denotes p50
R342 T624 T641 themeOf p50,translocation
R343 T625 T641 themeOf p65,translocation

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T767 4-17 Localization denotes translocation
T753 181-185 Protein denotes CCR5
T752 136-140 Protein denotes CCR5
T751 29-32 Protein denotes p65
T750 21-24 Protein denotes p50
R411 T750 T767 themeOf p50,translocation
R412 T751 T767 themeOf p65,translocation

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T405 218-225 NN denotes protein
T404 208-217 JJ denotes apoptotic
T403 201-207 NN denotes target
T402 195-200 NN denotes NF-κB
T401 189-193 NN denotes mice
T400 181-188 JJ denotes CCR5+/+
T399 178-180 IN denotes of
T398 170-177 NN denotes tissues
T397 161-169 NN denotes melanoma
T396 158-160 TO denotes to
T395 149-157 VB denotes compared
T394 144-148 NN denotes mice
T393 136-143 NN denotes CCR5−/−
T392 133-135 IN denotes of
T391 125-132 NN denotes tissues
T390 116-124 NN denotes melanoma
T389 112-115 DT denotes the
T388 109-111 IN denotes in
T387 103-108 VB denotes found
T386 99-102 VB denotes was
T385 95-98 NN denotes IκB
T384 92-94 IN denotes of
T383 76-91 NN denotes phosphorylation
T382 73-75 IN denotes of
T381 62-72 NN denotes inhibition
T380 58-61 DT denotes the
T379 50-57 IN denotes through
T378 42-49 NN denotes nucleus
T377 38-41 DT denotes the
T376 33-37 IN denotes into
T375 29-32 NN denotes p65
T374 25-28 CC denotes and
T373 21-24 NN denotes p50
T372 18-20 IN denotes of
T371 4-17 NN denotes translocation
T370 0-3 CC denotes and
R151 T370 T379 arg1Of and,through
R152 T370 T386 arg1Of and,was
R153 T370 T387 arg2Of and,found
R154 T371 T370 arg2Of translocation,and
R155 T371 T372 arg1Of translocation,of
R156 T371 T376 arg1Of translocation,into
R157 T373 T374 arg1Of p50,and
R158 T374 T372 arg2Of and,of
R159 T375 T374 arg2Of p65,and
R160 T378 T376 arg2Of nucleus,into
R161 T378 T377 arg1Of nucleus,the
R162 T381 T379 arg2Of inhibition,through
R163 T381 T380 arg1Of inhibition,the
R164 T381 T382 arg1Of inhibition,of
R165 T383 T382 arg2Of phosphorylation,of
R166 T383 T384 arg1Of phosphorylation,of
R167 T385 T384 arg2Of IκB,of
R168 T387 T386 arg2Of found,was
R169 T387 T388 arg1Of found,in
R170 T387 T395 arg1Of found,compared
R171 T391 T388 arg2Of tissues,in
R172 T391 T389 arg1Of tissues,the
R173 T391 T390 arg1Of tissues,melanoma
R174 T391 T392 arg1Of tissues,of
R175 T394 T392 arg2Of mice,of
R176 T394 T393 arg1Of mice,CCR5−/−
R177 T396 T395 arg2Of to,compared
R178 T398 T396 arg2Of tissues,to
R179 T398 T397 arg1Of tissues,melanoma
R180 T398 T399 arg1Of tissues,of
R181 T401 T399 arg2Of mice,of
R182 T401 T400 arg1Of mice,CCR5+/+

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T177 181-185 Protein denotes CCR5
T176 136-140 Protein denotes CCR5
T175 29-32 Protein denotes p65
T174 21-24 Protein denotes p50

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T550 29-32 http://www.uniprot.org/uniprot/P21579 denotes p65
T549 29-32 http://www.uniprot.org/uniprot/Q04206 denotes p65
T548 21-24 http://www.uniprot.org/uniprot/P19838 denotes p50
T541 181-185 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T540 136-140 http://www.uniprot.org/uniprot/P51681 denotes CCR5

UBERON-AE

Id Subject Object Predicate Lexical cue
T114 170-177 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues
T113 125-132 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues

GO-BP

Id Subject Object Predicate Lexical cue
T207 76-98 http://purl.obolibrary.org/obo/GO_0007252 denotes phosphorylation of IκB
T206 76-91 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T205 62-98 http://purl.obolibrary.org/obo/GO_1903720 denotes inhibition of phosphorylation of IκB
T204 62-91 http://purl.obolibrary.org/obo/GO_0042326 denotes inhibition of phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T213 42-49 http://purl.obolibrary.org/obo/GO_0005634 denotes nucleus

simple1

Id Subject Object Predicate Lexical cue
T250 181-185 Protein denotes CCR5
T249 136-140 Protein denotes CCR5
T248 29-32 Protein denotes p65
T247 21-24 Protein denotes p50

DLUT931

Id Subject Object Predicate Lexical cue
T581 62-72 Negative_regulation denotes inhibition
T580 4-17 Localization denotes translocation
T567 181-185 Protein denotes CCR5
T566 136-140 Protein denotes CCR5
T565 29-32 Protein denotes p65
T564 21-24 Protein denotes p50
R318 T564 T580 themeOf p50,translocation
R319 T565 T580 themeOf p65,translocation
R324 T580 T581 themeOf translocation,inhibition
R325 T580 T581 themeOf translocation,inhibition

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T810 195-200 Protein denotes NF-κB
T808 189-193 Protein denotes mice
T801 144-148 Protein denotes mice
T791 29-32 Protein denotes p65
T782 218-225 Protein denotes protein
T780 38-49 Entity denotes the nucleus
T775 21-24 Protein denotes p50

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T989 218-225 NN denotes protein
T988 208-217 JJ denotes apoptotic
T987 201-207 NN denotes target
T986 195-200 JJ denotes NF-κB
T985 193-194 . denotes .
T984 189-193 NNS denotes mice
T983 187-188 NN denotes +
T982 186-187 NN denotes /
T981 185-186 CD denotes +
T980 181-185 CD denotes CCR5
T979 178-180 IN denotes of
T978 170-177 NNS denotes tissues
T977 161-169 VB denotes melanoma
T976 158-160 TO denotes to
T975 149-157 VBN denotes compared
T974 144-148 NNS denotes mice
T973 142-143 NN denotes −
T972 141-142 NN denotes /
T971 140-141 CD denotes −
T970 136-140 CD denotes CCR5
T969 133-135 IN denotes of
T968 125-132 NNS denotes tissues
T967 116-124 NN denotes melanoma
T966 112-115 DT denotes the
T965 109-111 IN denotes in
T964 103-108 VBN denotes found
T963 99-102 VBD denotes was
T962 95-98 NNP denotes IκB
T961 92-94 IN denotes of
T960 76-91 NN denotes phosphorylation
T959 73-75 IN denotes of
T958 62-72 NN denotes inhibition
T957 58-61 DT denotes the
T956 50-57 IN denotes through
T955 42-49 NN denotes nucleus
T954 38-41 DT denotes the
T953 33-37 IN denotes into
T952 29-32 CD denotes p65
T951 25-28 CC denotes and
T950 21-24 CD denotes p50
T949 18-20 IN denotes of
T948 4-17 NN denotes translocation
T947 0-3 CC denotes and
R554 T949 T948 prep of,translocation
R555 T950 T949 pobj p50,of
R556 T951 T950 cc and,p50
R557 T952 T950 conj p65,p50
R559 T954 T955 det the,nucleus
R560 T955 T953 pobj nucleus,into
R562 T957 T958 det the,inhibition
R563 T958 T956 pobj inhibition,through
R564 T959 T958 prep of,inhibition
R565 T960 T959 pobj phosphorylation,of
R566 T961 T960 prep of,phosphorylation
R567 T962 T961 pobj IκB,of
R568 T963 T964 auxpass was,found
R569 T964 T964 ROOT found,found
R570 T965 T964 prep in,found
R571 T966 T968 det the,tissues
R572 T967 T968 compound melanoma,tissues
R573 T968 T965 pobj tissues,in
R574 T969 T968 prep of,tissues
R575 T970 T974 nummod CCR5,mice
R576 T971 T974 nummod −,mice
R577 T972 T974 compound /,mice
R578 T973 T974 compound −,mice
R579 T974 T969 pobj mice,of
R580 T975 T964 prep compared,found
R581 T976 T975 prep to,compared
R582 T977 T978 compound melanoma,tissues
R583 T978 T976 pobj tissues,to
R584 T979 T978 prep of,tissues
R585 T980 T984 nummod CCR5,mice
R586 T981 T984 nummod +,mice
R587 T982 T984 amod /,mice
R588 T983 T984 amod +,mice
R589 T984 T979 pobj mice,of
R590 T985 T964 punct .,found
R591 T986 T987 amod NF-κB,target

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T671 195-200 Protein denotes NF-κB
T668 62-72 Negative_regulation denotes inhibition
T667 62-72 Negative_regulation denotes inhibition
T666 62-72 Negative_regulation denotes inhibition
T665 4-17 Localization denotes translocation
T664 4-17 Localization denotes translocation
T662 76-91 Phosphorylation denotes phosphorylation
T661 42-49 Entity denotes nucleus
T659 95-98 Protein denotes IκB
T658 29-32 Protein denotes p65
T657 21-24 Protein denotes p50
R353 T657 T664 themeOf p50,translocation
R354 T658 T665 themeOf p65,translocation
R355 T659 T662 themeOf IκB,phosphorylation
R357 T661 T664 locationOf nucleus,translocation
R358 T661 T665 locationOf nucleus,translocation
R359 T662 T668 themeOf phosphorylation,inhibition
R360 T664 T666 themeOf translocation,inhibition
R362 T665 T667 themeOf translocation,inhibition