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PMC:3342329 / 666-917 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T99 193-197 Protein denotes CCR5
T100 238-242 Protein denotes CCR5
T98 133-148 Phosphorylation denotes phosphorylation
T97 119-129 Negative_regulation denotes inhibition
T96 99-106 Entity denotes nucleus
T95 86-89 Protein denotes p65
T94 78-81 Protein denotes p50
T93 61-74 Localization denotes translocation
T71 238-242 Protein denotes CCR5
T70 193-197 Protein denotes CCR5
T69 86-89 Protein denotes p65
T68 78-81 Protein denotes p50
R19 T94 T93 themeOf p50,translocation
R20 T95 T93 themeOf p65,translocation
R21 T96 T93 locationOf nucleus,translocation
R22 T98 T97 themeOf phosphorylation,inhibition

testone

Id Subject Object Predicate Lexical cue
T35 238-242 Protein denotes CCR5
T34 193-197 Protein denotes CCR5
T33 86-89 Protein denotes p65
T32 78-81 Protein denotes p50
T52 133-148 Phosphorylation denotes phosphorylation
T51 99-106 Entity denotes nucleus
T50 61-74 Localization denotes translocation
T49 30-37 Binding denotes binding
T48 12-22 Negative_regulation denotes inhibition
R5 T32 T50 themeOf p50,translocation
R6 T33 T50 themeOf p65,translocation
R11 T49 T48 themeOf binding,inhibition
R12 T51 T50 locationOf nucleus,translocation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T641 61-74 Localization denotes translocation
T627 238-242 Protein denotes CCR5
T626 193-197 Protein denotes CCR5
T625 86-89 Protein denotes p65
T624 78-81 Protein denotes p50
R342 T624 T641 themeOf p50,translocation
R343 T625 T641 themeOf p65,translocation

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T767 61-74 Localization denotes translocation
T753 238-242 Protein denotes CCR5
T752 193-197 Protein denotes CCR5
T751 86-89 Protein denotes p65
T750 78-81 Protein denotes p50
R411 T750 T767 themeOf p50,translocation
R412 T751 T767 themeOf p65,translocation

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T401 246-250 NN denotes mice
T400 238-245 JJ denotes CCR5+/+
T399 235-237 IN denotes of
T398 227-234 NN denotes tissues
T397 218-226 NN denotes melanoma
T396 215-217 TO denotes to
T395 206-214 VB denotes compared
T394 201-205 NN denotes mice
T393 193-200 NN denotes CCR5−/−
T392 190-192 IN denotes of
T391 182-189 NN denotes tissues
T390 173-181 NN denotes melanoma
T389 169-172 DT denotes the
T388 166-168 IN denotes in
T387 160-165 VB denotes found
T386 156-159 VB denotes was
T385 152-155 NN denotes IκB
T384 149-151 IN denotes of
T383 133-148 NN denotes phosphorylation
T382 130-132 IN denotes of
T381 119-129 NN denotes inhibition
T380 115-118 DT denotes the
T379 107-114 IN denotes through
T378 99-106 NN denotes nucleus
T377 95-98 DT denotes the
T376 90-94 IN denotes into
T375 86-89 NN denotes p65
T374 82-85 CC denotes and
T373 78-81 NN denotes p50
T372 75-77 IN denotes of
T371 61-74 NN denotes translocation
T370 57-60 CC denotes and
T369 55-56 -COMMA- denotes ,
T368 50-55 NN denotes NF-κB
T367 47-49 IN denotes of
T366 38-46 NN denotes activity
T365 30-37 NN denotes binding
T364 26-29 NN denotes DNA
T363 23-25 IN denotes of
T362 12-22 NN denotes inhibition
T361 0-11 JJ denotes Significant
R142 T362 T361 arg1Of inhibition,Significant
R143 T362 T363 arg1Of inhibition,of
R144 T362 T370 arg1Of inhibition,and
R145 T366 T363 arg2Of activity,of
R146 T366 T364 arg1Of activity,DNA
R147 T366 T365 arg1Of activity,binding
R148 T366 T367 arg1Of activity,of
R149 T368 T367 arg2Of NF-κB,of
R150 T370 T369 arg1Of and,","
R151 T370 T379 arg1Of and,through
R152 T370 T386 arg1Of and,was
R153 T370 T387 arg2Of and,found
R154 T371 T370 arg2Of translocation,and
R155 T371 T372 arg1Of translocation,of
R156 T371 T376 arg1Of translocation,into
R157 T373 T374 arg1Of p50,and
R158 T374 T372 arg2Of and,of
R159 T375 T374 arg2Of p65,and
R160 T378 T376 arg2Of nucleus,into
R161 T378 T377 arg1Of nucleus,the
R162 T381 T379 arg2Of inhibition,through
R163 T381 T380 arg1Of inhibition,the
R164 T381 T382 arg1Of inhibition,of
R165 T383 T382 arg2Of phosphorylation,of
R166 T383 T384 arg1Of phosphorylation,of
R167 T385 T384 arg2Of IκB,of
R168 T387 T386 arg2Of found,was
R169 T387 T388 arg1Of found,in
R170 T387 T395 arg1Of found,compared
R171 T391 T388 arg2Of tissues,in
R172 T391 T389 arg1Of tissues,the
R173 T391 T390 arg1Of tissues,melanoma
R174 T391 T392 arg1Of tissues,of
R175 T394 T392 arg2Of mice,of
R176 T394 T393 arg1Of mice,CCR5−/−
R177 T396 T395 arg2Of to,compared
R178 T398 T396 arg2Of tissues,to
R179 T398 T397 arg1Of tissues,melanoma
R180 T398 T399 arg1Of tissues,of
R181 T401 T399 arg2Of mice,of
R182 T401 T400 arg1Of mice,CCR5+/+

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T177 238-242 Protein denotes CCR5
T176 193-197 Protein denotes CCR5
T175 86-89 Protein denotes p65
T174 78-81 Protein denotes p50

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T550 86-89 http://www.uniprot.org/uniprot/P21579 denotes p65
T549 86-89 http://www.uniprot.org/uniprot/Q04206 denotes p65
T548 78-81 http://www.uniprot.org/uniprot/P19838 denotes p50
T541 238-242 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T540 193-197 http://www.uniprot.org/uniprot/P51681 denotes CCR5

UBERON-AE

Id Subject Object Predicate Lexical cue
T114 227-234 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues
T113 182-189 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues

GO-BP

Id Subject Object Predicate Lexical cue
T207 133-155 http://purl.obolibrary.org/obo/GO_0007252 denotes phosphorylation of IκB
T206 133-148 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T205 119-155 http://purl.obolibrary.org/obo/GO_1903720 denotes inhibition of phosphorylation of IκB
T204 119-148 http://purl.obolibrary.org/obo/GO_0042326 denotes inhibition of phosphorylation
T203 12-37 http://purl.obolibrary.org/obo/GO_0039568 denotes inhibition of DNA binding
T202 12-37 http://purl.obolibrary.org/obo/GO_1904743 denotes inhibition of DNA binding
T201 12-37 http://purl.obolibrary.org/obo/GO_0043392 denotes inhibition of DNA binding

GO-MF

Id Subject Object Predicate Lexical cue
T214 26-37 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding
T215 30-37 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T213 99-106 http://purl.obolibrary.org/obo/GO_0005634 denotes nucleus

sentences

Id Subject Object Predicate Lexical cue
T124 0-251 Sentence denotes Significant inhibition of DNA binding activity of NF-κB, and translocation of p50 and p65 into the nucleus through the inhibition of phosphorylation of IκB was found in the melanoma tissues of CCR5−/− mice compared to melanoma tissues of CCR5+/+ mice.
T7 0-251 Sentence denotes Significant inhibition of DNA binding activity of NF-κB, and translocation of p50 and p65 into the nucleus through the inhibition of phosphorylation of IκB was found in the melanoma tissues of CCR5−/− mice compared to melanoma tissues of CCR5+/+ mice.

simple1

Id Subject Object Predicate Lexical cue
T250 238-242 Protein denotes CCR5
T249 193-197 Protein denotes CCR5
T248 86-89 Protein denotes p65
T247 78-81 Protein denotes p50

DLUT931

Id Subject Object Predicate Lexical cue
T581 119-129 Negative_regulation denotes inhibition
T580 61-74 Localization denotes translocation
T567 238-242 Protein denotes CCR5
T566 193-197 Protein denotes CCR5
T565 86-89 Protein denotes p65
T564 78-81 Protein denotes p50
R318 T564 T580 themeOf p50,translocation
R319 T565 T580 themeOf p65,translocation
R324 T580 T581 themeOf translocation,inhibition
R325 T580 T581 themeOf translocation,inhibition

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T808 246-250 Protein denotes mice
T801 201-205 Protein denotes mice
T791 86-89 Protein denotes p65
T780 95-106 Entity denotes the nucleus
T777 47-55 Protein denotes of NF-κB
T775 78-81 Protein denotes p50

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T985 250-251 . denotes .
T984 246-250 NNS denotes mice
T983 244-245 NN denotes +
T982 243-244 NN denotes /
T981 242-243 CD denotes +
T980 238-242 CD denotes CCR5
T979 235-237 IN denotes of
T978 227-234 NNS denotes tissues
T977 218-226 VB denotes melanoma
T976 215-217 TO denotes to
T975 206-214 VBN denotes compared
T974 201-205 NNS denotes mice
T973 199-200 NN denotes −
T972 198-199 NN denotes /
T971 197-198 CD denotes −
T970 193-197 CD denotes CCR5
T969 190-192 IN denotes of
T968 182-189 NNS denotes tissues
T967 173-181 NN denotes melanoma
T966 169-172 DT denotes the
T965 166-168 IN denotes in
T964 160-165 VBN denotes found
T963 156-159 VBD denotes was
T962 152-155 NNP denotes IκB
T961 149-151 IN denotes of
T960 133-148 NN denotes phosphorylation
T959 130-132 IN denotes of
T958 119-129 NN denotes inhibition
T957 115-118 DT denotes the
T956 107-114 IN denotes through
T955 99-106 NN denotes nucleus
T954 95-98 DT denotes the
T953 90-94 IN denotes into
T952 86-89 CD denotes p65
T951 82-85 CC denotes and
T950 78-81 CD denotes p50
T949 75-77 IN denotes of
T948 61-74 NN denotes translocation
T947 57-60 CC denotes and
T946 55-56 , denotes ,
T945 50-55 NNP denotes NF-κB
T944 47-49 IN denotes of
T943 38-46 NN denotes activity
T942 30-37 JJ denotes binding
T941 26-29 NNP denotes DNA
T940 23-25 IN denotes of
T939 12-22 NN denotes inhibition
T938 0-11 JJ denotes Significant
R543 T938 T939 amod Significant,inhibition
R544 T939 T964 nsubjpass inhibition,found
R545 T940 T939 prep of,inhibition
R546 T941 T940 pobj DNA,of
R547 T942 T943 amod binding,activity
R548 T943 T939 conj activity,inhibition
R549 T944 T943 prep of,activity
R550 T945 T944 pobj NF-κB,of
R551 T946 T943 punct ",",activity
R552 T947 T943 cc and,activity
R553 T948 T943 conj translocation,activity
R554 T949 T948 prep of,translocation
R555 T950 T949 pobj p50,of
R556 T951 T950 cc and,p50
R557 T952 T950 conj p65,p50
R558 T953 T939 prep into,inhibition
R559 T954 T955 det the,nucleus
R560 T955 T953 pobj nucleus,into
R561 T956 T939 prep through,inhibition
R562 T957 T958 det the,inhibition
R563 T958 T956 pobj inhibition,through
R564 T959 T958 prep of,inhibition
R565 T960 T959 pobj phosphorylation,of
R566 T961 T960 prep of,phosphorylation
R567 T962 T961 pobj IκB,of
R568 T963 T964 auxpass was,found
R569 T964 T964 ROOT found,found
R570 T965 T964 prep in,found
R571 T966 T968 det the,tissues
R572 T967 T968 compound melanoma,tissues
R573 T968 T965 pobj tissues,in
R574 T969 T968 prep of,tissues
R575 T970 T974 nummod CCR5,mice
R576 T971 T974 nummod −,mice
R577 T972 T974 compound /,mice
R578 T973 T974 compound −,mice
R579 T974 T969 pobj mice,of
R580 T975 T964 prep compared,found
R581 T976 T975 prep to,compared
R582 T977 T978 compound melanoma,tissues
R583 T978 T976 pobj tissues,to
R584 T979 T978 prep of,tissues
R585 T980 T984 nummod CCR5,mice
R586 T981 T984 nummod +,mice
R587 T982 T984 amod /,mice
R588 T983 T984 amod +,mice
R589 T984 T979 pobj mice,of
R590 T985 T964 punct .,found

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T670 12-22 Negative_regulation denotes inhibition
T669 12-22 Negative_regulation denotes inhibition
T668 119-129 Negative_regulation denotes inhibition
T667 119-129 Negative_regulation denotes inhibition
T666 119-129 Negative_regulation denotes inhibition
T665 61-74 Localization denotes translocation
T664 61-74 Localization denotes translocation
T663 12-22 Negative_regulation denotes inhibition
T662 133-148 Phosphorylation denotes phosphorylation
T661 99-106 Entity denotes nucleus
T660 30-37 Binding denotes binding
T659 152-155 Protein denotes IκB
T658 86-89 Protein denotes p65
T657 78-81 Protein denotes p50
T656 50-55 Protein denotes NF-κB
R352 T656 T660 themeOf NF-κB,binding
R353 T657 T664 themeOf p50,translocation
R354 T658 T665 themeOf p65,translocation
R355 T659 T662 themeOf IκB,phosphorylation
R356 T660 T663 themeOf binding,inhibition
R357 T661 T664 locationOf nucleus,translocation
R358 T661 T665 locationOf nucleus,translocation
R359 T662 T668 themeOf phosphorylation,inhibition
R360 T664 T666 themeOf translocation,inhibition
R361 T664 T669 themeOf translocation,inhibition
R362 T665 T667 themeOf translocation,inhibition
R363 T665 T670 themeOf translocation,inhibition