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PMC:3342329 / 4987-5122 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T1362 102-112 Gene_expression denotes expression
T1361 85-91 Protein denotes GM-CSF
T1360 79-83 Protein denotes IL-3
T1359 73-77 Protein denotes IL-2
T1358 59-68 Positive_regulation denotes essential
T1357 50-55 Protein denotes c-Rel
T1356 17-26 Negative_regulation denotes deficient
T1355 11-16 Protein denotes c-Rel
T1306 85-91 Protein denotes GM-CSF
T1305 79-83 Protein denotes IL-3
T1304 73-77 Protein denotes IL-2
T1303 50-55 Protein denotes c-Rel
T1302 11-16 Protein denotes c-Rel
R779 T1355 T1356 themeOf c-Rel,deficient
R780 T1356 T1358 causeOf deficient,essential
R781 T1357 T1358 causeOf c-Rel,essential
R782 T1359 T1362 themeOf IL-2,expression
R783 T1360 T1362 themeOf IL-3,expression
R784 T1361 T1362 themeOf GM-CSF,expression
R785 T1362 T1358 themeOf expression,essential

testone

Id Subject Object Predicate Lexical cue
T1264 102-112 Gene_expression denotes expression
T1263 59-68 Positive_regulation denotes essential
T1262 17-26 Negative_regulation denotes deficient
T1232 85-91 Protein denotes GM-CSF
T1231 79-83 Protein denotes IL-3
T1230 73-77 Protein denotes IL-2
T1229 50-55 Protein denotes c-Rel
T1228 11-16 Protein denotes c-Rel
R752 T1228 T1262 themeOf c-Rel,deficient
R753 T1229 T1263 causeOf c-Rel,essential
R754 T1230 T1264 themeOf IL-2,expression
R755 T1231 T1264 themeOf IL-3,expression
R756 T1232 T1264 themeOf GM-CSF,expression
R764 T1262 T1263 causeOf deficient,essential
R765 T1264 T1263 themeOf expression,essential

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2925 85-91 Protein denotes GM-CSF
T2924 79-83 Protein denotes IL-3
T2923 73-77 Protein denotes IL-2
T2922 50-55 Protein denotes c-Rel
T2921 11-16 Protein denotes c-Rel
T2957 17-26 Negative_regulation denotes deficient
T2956 59-68 Positive_regulation denotes essential
T2955 102-112 Gene_expression denotes expression
R1896 T2921 T2957 themeOf c-Rel,deficient
R1899 T2922 T2956 causeOf c-Rel,essential
R1901 T2922 T2956 causeOf c-Rel,essential
R1902 T2922 T2956 causeOf c-Rel,essential
R1904 T2923 T2956 themeOf IL-2,essential
R1907 T2923 T2955 themeOf IL-2,expression
R1908 T2924 T2956 themeOf IL-3,essential
R1913 T2924 T2955 themeOf IL-3,expression
R1914 T2925 T2956 themeOf GM-CSF,essential
R1915 T2925 T2955 themeOf GM-CSF,expression

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4219 17-26 Negative_regulation denotes deficient
T4218 59-68 Positive_regulation denotes essential
T4217 102-112 Gene_expression denotes expression
T4187 85-91 Protein denotes GM-CSF
T4186 79-83 Protein denotes IL-3
T4185 73-77 Protein denotes IL-2
T4184 50-55 Protein denotes c-Rel
T4183 11-16 Protein denotes c-Rel
R3018 T4217 T4218 themeOf expression,essential
R3019 T4217 T4218 themeOf expression,essential
R3020 T4217 T4218 themeOf expression,essential
R2986 T4183 T4219 themeOf c-Rel,deficient
R2987 T4184 T4218 causeOf c-Rel,essential
R2988 T4184 T4218 causeOf c-Rel,essential
R2989 T4184 T4218 causeOf c-Rel,essential
R2990 T4184 T4218 causeOf c-Rel,essential
R2991 T4184 T4218 causeOf c-Rel,essential
R2992 T4184 T4218 causeOf c-Rel,essential
R2993 T4185 T4218 themeOf IL-2,essential
R2994 T4185 T4217 themeOf IL-2,expression
R2995 T4186 T4218 themeOf IL-3,essential
R2996 T4186 T4217 themeOf IL-3,expression
R2998 T4187 T4218 themeOf GM-CSF,essential
R2999 T4187 T4217 themeOf GM-CSF,expression

2_test

Id Subject Object Predicate Lexical cue
22567084-8622948-91707028 131-133 8622948 denotes 30

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2370 133-134 -RRB- denotes ]
T2369 131-133 CD denotes 30
T2368 130-131 -LRB- denotes [
T2367 118-129 NN denotes lymphocytes
T2366 116-117 NN denotes T
T2365 113-115 IN denotes in
T2364 102-112 NN denotes expression
T2363 97-101 NN denotes IFNγ
T2362 93-96 CC denotes and
T2361 91-92 -COMMA- denotes ,
T2360 85-91 NN denotes GM-CSF
T2359 83-84 -COMMA- denotes ,
T2358 79-83 NN denotes IL-3
T2357 77-78 -COMMA- denotes ,
T2356 73-77 NN denotes IL-2
T2355 69-72 IN denotes for
T2354 59-68 JJ denotes essential
T2353 56-58 VB denotes is
T2352 50-55 NN denotes c-Rel
T2351 45-49 IN denotes that
T2350 32-44 VB denotes demonstrated
T2349 27-31 NN denotes mice
T2348 11-26 JJ denotes c-Rel-deficient
T2347 8-10 IN denotes on
T2346 0-7 NN denotes Studies
R1434 T2346 T2347 arg1Of Studies,on
R1435 T2346 T2350 arg1Of Studies,demonstrated
R1436 T2349 T2347 arg2Of mice,on
R1437 T2349 T2348 arg1Of mice,c-Rel-deficient
R1443 T2352 T2353 arg1Of c-Rel,is
R1444 T2352 T2354 arg1Of c-Rel,essential
R1445 T2353 T2350 arg2Of is,demonstrated
R1446 T2353 T2351 arg1Of is,that
R1447 T2353 T2368 arg1Of is,[
R1448 T2354 T2353 arg2Of essential,is
R1449 T2354 T2355 arg1Of essential,for
R1450 T2356 T2357 arg1Of IL-2,","
R1451 T2357 T2359 arg1Of ",",","
R1452 T2358 T2357 arg2Of IL-3,","
R1453 T2359 T2362 arg1Of ",",and
R1455 T2360 T2359 arg2Of GM-CSF,","
R1458 T2362 T2355 arg2Of and,for
R1459 T2362 T2361 arg1Of and,","
R1460 T2362 T2365 arg1Of and,in
R1462 T2364 T2362 arg2Of expression,and
R1463 T2364 T2363 arg1Of expression,IFNγ
R1465 T2367 T2365 arg2Of lymphocytes,in
R1466 T2367 T2366 arg1Of lymphocytes,T
R1467 T2369 T2368 arg2Of 30,[
R1468 T2370 T2368 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1547 85-91 Protein denotes GM-CSF
T1546 79-83 Protein denotes IL-3
T1545 73-77 Protein denotes IL-2
T1544 50-55 Protein denotes c-Rel
T1543 11-16 Protein denotes c-Rel

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2752 88-91 http://www.uniprot.org/uniprot/P04141 denotes CSF
T2751 85-91 http://www.uniprot.org/uniprot/P04141 denotes GM-CSF
T2750 73-77 http://www.uniprot.org/uniprot/P60568 denotes IL-2
T2749 50-55 http://www.uniprot.org/uniprot/Q04864 denotes c-Rel
T2748 11-16 http://www.uniprot.org/uniprot/Q04864 denotes c-Rel

GO-MF

Id Subject Object Predicate Lexical cue
T1668 79-83 http://purl.obolibrary.org/obo/GO_0005135 denotes IL-3
T1667 73-77 http://purl.obolibrary.org/obo/GO_0005134 denotes IL-2

sentences

Id Subject Object Predicate Lexical cue
T1426 0-135 Sentence denotes Studies on c-Rel-deficient mice demonstrated that c-Rel is essential for IL-2, IL-3, GM-CSF, and IFNγ expression in T lymphocytes [30].
T35 0-135 Sentence denotes Studies on c-Rel-deficient mice demonstrated that c-Rel is essential for IL-2, IL-3, GM-CSF, and IFNγ expression in T lymphocytes [30].

simple1

Id Subject Object Predicate Lexical cue
T1701 85-91 Protein denotes GM-CSF
T1700 79-83 Protein denotes IL-3
T1699 73-77 Protein denotes IL-2
T1698 50-55 Protein denotes c-Rel
T1697 11-16 Protein denotes c-Rel

DLUT931

Id Subject Object Predicate Lexical cue
T2818 102-112 Gene_expression denotes expression
T2817 59-68 Positive_regulation denotes essential
T2816 17-26 Negative_regulation denotes deficient
T2785 85-91 Protein denotes GM-CSF
T2784 79-83 Protein denotes IL-3
T2783 73-77 Protein denotes IL-2
T2782 50-55 Protein denotes c-Rel
T2781 11-16 Protein denotes c-Rel
R1829 T2781 T2816 themeOf c-Rel,deficient
R1833 T2782 T2817 causeOf c-Rel,essential
R1834 T2782 T2817 causeOf c-Rel,essential
R1835 T2782 T2817 causeOf c-Rel,essential
R1837 T2783 T2817 themeOf IL-2,essential
R1838 T2783 T2818 themeOf IL-2,expression
R1839 T2784 T2817 themeOf IL-3,essential
R1840 T2784 T2818 themeOf IL-3,expression
R1842 T2785 T2817 causeOf GM-CSF,essential
R1843 T2785 T2817 causeOf GM-CSF,essential
R1844 T2785 T2818 themeOf GM-CSF,expression
R1845 T2785 T2817 causeOf GM-CSF,essential
R1846 T2785 T2817 causeOf GM-CSF,essential
R1847 T2785 T2817 causeOf GM-CSF,essential
R1855 T2818 T2817 themeOf expression,essential
R1858 T2818 T2817 themeOf expression,essential
R1859 T2818 T2817 themeOf expression,essential
R1860 T2818 T2817 themeOf expression,essential
R1861 T2818 T2817 themeOf expression,essential
R1862 T2818 T2817 themeOf expression,essential

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4342 97-112 Gene_expression denotes IFNγ expression
T4279 97-101 Protein denotes IFNγ
T4275 50-55 Protein denotes c-Rel
T4272 85-91 Protein denotes GM-CSF
T4270 73-77 Protein denotes IL-2
T4251 8-16 Protein denotes on c-Rel
T4250 116-134 Entity denotes T lymphocytes [30]
T4233 79-83 Protein denotes IL-3
R3051 T4279 T4342 themeOf IFNγ,IFNγ expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3789 134-135 . denotes .
T3788 133-134 NNP denotes ]
T3787 131-133 CD denotes 30
T3786 130-131 NNP denotes [
T3785 118-129 NNS denotes lymphocytes
T3784 116-117 NNP denotes T
T3783 113-115 IN denotes in
T3782 102-112 NN denotes expression
T3781 97-101 NNP denotes IFNγ
T3780 93-96 CC denotes and
T3779 91-92 , denotes ,
T3778 85-91 NNP denotes GM-CSF
T3777 83-84 , denotes ,
T3776 79-83 NNP denotes IL-3
T3775 77-78 , denotes ,
T3774 73-77 NNP denotes IL-2
T3773 69-72 IN denotes for
T3772 59-68 JJ denotes essential
T3771 56-58 VBZ denotes is
T3770 50-55 NNP denotes c-Rel
T3769 45-49 IN denotes that
T3768 32-44 VBD denotes demonstrated
T3767 27-31 NNS denotes mice
T3766 11-26 JJ denotes c-Rel-deficient
T3765 8-10 IN denotes on
T3764 0-7 NNS denotes Studies
R2628 T3764 T3768 nsubj Studies,demonstrated
R2629 T3765 T3764 prep on,Studies
R2630 T3766 T3767 amod c-Rel-deficient,mice
R2631 T3767 T3765 pobj mice,on
R2633 T3768 T3768 ROOT demonstrated,demonstrated
R2634 T3769 T3771 mark that,is
R2635 T3770 T3771 nsubj c-Rel,is
R2637 T3771 T3768 ccomp is,demonstrated
R2638 T3772 T3771 acomp essential,is
R2639 T3773 T3771 prep for,is
R2641 T3774 T3773 pobj IL-2,for
R2642 T3775 T3774 punct ",",IL-2
R2643 T3776 T3774 conj IL-3,IL-2
R2644 T3777 T3776 punct ",",IL-3
R2646 T3778 T3776 conj GM-CSF,IL-3
R2647 T3779 T3778 punct ",",GM-CSF
R2648 T3780 T3778 cc and,GM-CSF
R2650 T3781 T3782 compound IFNγ,expression
R2651 T3782 T3771 attr expression,is
R2652 T3783 T3782 prep in,expression
R2654 T3784 T3785 compound T,lymphocytes
R2655 T3785 T3783 pobj lymphocytes,in
R2656 T3786 T3788 nmod [,]
R2657 T3787 T3788 nummod 30,]
R2658 T3788 T3785 appos ],lymphocytes
R2659 T3789 T3768 punct .,demonstrated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T3010 59-68 Positive_regulation denotes essential
T3009 59-68 Positive_regulation denotes essential
T3008 59-68 Positive_regulation denotes essential
T3007 102-112 Gene_expression denotes expression
T3006 102-112 Gene_expression denotes expression
T3005 102-112 Gene_expression denotes expression
T3004 97-101 Protein denotes IFNγ
T3003 85-91 Protein denotes GM-CSF
T3002 73-83 Protein denotes IL-2, IL-3
R1922 T3002 T3005 themeOf "IL-2, IL-3",expression
R1924 T3003 T3006 themeOf GM-CSF,expression
R1925 T3004 T3007 themeOf IFNγ,expression
R1926 T3005 T3008 themeOf expression,essential
R1927 T3006 T3009 themeOf expression,essential
R1928 T3007 T3010 themeOf expression,essential