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PMC:3342329 / 4848-5133 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T1362 241-251 Gene_expression denotes expression
T1361 224-230 Protein denotes GM-CSF
T1360 218-222 Protein denotes IL-3
T1359 212-216 Protein denotes IL-2
T1358 198-207 Positive_regulation denotes essential
T1357 189-194 Protein denotes c-Rel
T1356 156-165 Negative_regulation denotes deficient
T1355 150-155 Protein denotes c-Rel
T1306 224-230 Protein denotes GM-CSF
T1305 218-222 Protein denotes IL-3
T1304 212-216 Protein denotes IL-2
T1303 189-194 Protein denotes c-Rel
T1302 150-155 Protein denotes c-Rel
R779 T1355 T1356 themeOf c-Rel,deficient
R780 T1356 T1358 causeOf deficient,essential
R781 T1357 T1358 causeOf c-Rel,essential
R782 T1359 T1362 themeOf IL-2,expression
R783 T1360 T1362 themeOf IL-3,expression
R784 T1361 T1362 themeOf GM-CSF,expression
R785 T1362 T1358 themeOf expression,essential

testone

Id Subject Object Predicate Lexical cue
T1264 241-251 Gene_expression denotes expression
T1263 198-207 Positive_regulation denotes essential
T1262 156-165 Negative_regulation denotes deficient
T1232 224-230 Protein denotes GM-CSF
T1231 218-222 Protein denotes IL-3
T1230 212-216 Protein denotes IL-2
T1229 189-194 Protein denotes c-Rel
T1228 150-155 Protein denotes c-Rel
R752 T1228 T1262 themeOf c-Rel,deficient
R753 T1229 T1263 causeOf c-Rel,essential
R754 T1230 T1264 themeOf IL-2,expression
R755 T1231 T1264 themeOf IL-3,expression
R756 T1232 T1264 themeOf GM-CSF,expression
R764 T1262 T1263 causeOf deficient,essential
R765 T1264 T1263 themeOf expression,essential

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2925 224-230 Protein denotes GM-CSF
T2924 218-222 Protein denotes IL-3
T2923 212-216 Protein denotes IL-2
T2922 189-194 Protein denotes c-Rel
T2921 150-155 Protein denotes c-Rel
T2957 156-165 Negative_regulation denotes deficient
T2956 198-207 Positive_regulation denotes essential
T2955 241-251 Gene_expression denotes expression
R1896 T2921 T2957 themeOf c-Rel,deficient
R1899 T2922 T2956 causeOf c-Rel,essential
R1901 T2922 T2956 causeOf c-Rel,essential
R1902 T2922 T2956 causeOf c-Rel,essential
R1904 T2923 T2956 themeOf IL-2,essential
R1907 T2923 T2955 themeOf IL-2,expression
R1908 T2924 T2956 themeOf IL-3,essential
R1913 T2924 T2955 themeOf IL-3,expression
R1914 T2925 T2956 themeOf GM-CSF,essential
R1915 T2925 T2955 themeOf GM-CSF,expression

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4219 156-165 Negative_regulation denotes deficient
T4218 198-207 Positive_regulation denotes essential
T4217 241-251 Gene_expression denotes expression
T4187 224-230 Protein denotes GM-CSF
T4186 218-222 Protein denotes IL-3
T4185 212-216 Protein denotes IL-2
T4184 189-194 Protein denotes c-Rel
T4183 150-155 Protein denotes c-Rel
R3018 T4217 T4218 themeOf expression,essential
R3019 T4217 T4218 themeOf expression,essential
R3020 T4217 T4218 themeOf expression,essential
R2986 T4183 T4219 themeOf c-Rel,deficient
R2987 T4184 T4218 causeOf c-Rel,essential
R2988 T4184 T4218 causeOf c-Rel,essential
R2989 T4184 T4218 causeOf c-Rel,essential
R2990 T4184 T4218 causeOf c-Rel,essential
R2991 T4184 T4218 causeOf c-Rel,essential
R2992 T4184 T4218 causeOf c-Rel,essential
R2993 T4185 T4218 themeOf IL-2,essential
R2994 T4185 T4217 themeOf IL-2,expression
R2995 T4186 T4218 themeOf IL-3,essential
R2996 T4186 T4217 themeOf IL-3,expression
R2998 T4187 T4218 themeOf GM-CSF,essential
R2999 T4187 T4217 themeOf GM-CSF,expression

2_test

Id Subject Object Predicate Lexical cue
22567084-9990849-91707026 32-34 9990849 denotes 28
22567084-15313403-91707027 134-136 15313403 denotes 29
22567084-8622948-91707028 270-272 8622948 denotes 30

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2370 272-273 -RRB- denotes ]
T2369 270-272 CD denotes 30
T2368 269-270 -LRB- denotes [
T2367 257-268 NN denotes lymphocytes
T2366 255-256 NN denotes T
T2365 252-254 IN denotes in
T2364 241-251 NN denotes expression
T2363 236-240 NN denotes IFNγ
T2362 232-235 CC denotes and
T2361 230-231 -COMMA- denotes ,
T2360 224-230 NN denotes GM-CSF
T2359 222-223 -COMMA- denotes ,
T2358 218-222 NN denotes IL-3
T2357 216-217 -COMMA- denotes ,
T2356 212-216 NN denotes IL-2
T2355 208-211 IN denotes for
T2354 198-207 JJ denotes essential
T2353 195-197 VB denotes is
T2352 189-194 NN denotes c-Rel
T2351 184-188 IN denotes that
T2350 171-183 VB denotes demonstrated
T2349 166-170 NN denotes mice
T2348 150-165 JJ denotes c-Rel-deficient
T2347 147-149 IN denotes on
T2346 139-146 NN denotes Studies
T2345 136-137 -RRB- denotes ]
T2344 134-136 CD denotes 29
T2343 133-134 -LRB- denotes [
T2342 124-132 RB denotes normally
T2341 115-123 VB denotes function
T2340 112-114 TO denotes to
T2339 105-111 NN denotes system
T2338 98-104 JJ denotes immune
T2337 94-97 DT denotes the
T2336 90-93 IN denotes for
T2335 81-89 VB denotes required
T2334 78-80 VB denotes is
T2333 75-77 PRP denotes it
T2332 73-74 -COMMA- denotes ,
T2331 67-73 NN denotes growth
T2330 61-66 NN denotes tumor
T2329 52-60 VB denotes promotes
T2328 46-51 NN denotes NF-κB
T2327 37-45 IN denotes Although
T2326 34-35 -RRB- denotes ]
T2325 32-34 CD denotes 28
T2324 31-32 -LRB- denotes [
T2323 20-30 NN denotes expression
T2322 15-19 NN denotes gene
T2321 5-14 JJ denotes apoptotic
R1402 T2323 T2321 arg1Of expression,apoptotic
R1403 T2323 T2322 arg1Of expression,gene
R1406 T2325 T2324 arg2Of 28,[
R1407 T2326 T2324 arg3Of ],[
R1408 T2328 T2329 arg1Of NF-κB,promotes
R1410 T2329 T2327 arg2Of promotes,Although
R1412 T2331 T2329 arg2Of growth,promotes
R1413 T2331 T2330 arg1Of growth,tumor
R1414 T2333 T2334 arg1Of it,is
R1415 T2333 T2335 arg2Of it,required
R1418 T2335 T2327 arg1Of required,Although
R1419 T2335 T2332 arg1Of required,","
R1420 T2335 T2334 arg2Of required,is
R1421 T2335 T2336 arg1Of required,for
R1423 T2339 T2336 arg2Of system,for
R1424 T2339 T2337 arg1Of system,the
R1425 T2339 T2338 arg1Of system,immune
R1426 T2339 T2340 modOf system,to
R1429 T2341 T2340 arg1Of function,to
R1430 T2341 T2342 arg1Of function,normally
R1431 T2341 T2343 arg1Of function,[
R1432 T2344 T2343 arg2Of 29,[
R1433 T2345 T2343 arg3Of ],[
R1434 T2346 T2347 arg1Of Studies,on
R1435 T2346 T2350 arg1Of Studies,demonstrated
R1436 T2349 T2347 arg2Of mice,on
R1437 T2349 T2348 arg1Of mice,c-Rel-deficient
R1443 T2352 T2353 arg1Of c-Rel,is
R1444 T2352 T2354 arg1Of c-Rel,essential
R1445 T2353 T2350 arg2Of is,demonstrated
R1446 T2353 T2351 arg1Of is,that
R1447 T2353 T2368 arg1Of is,[
R1448 T2354 T2353 arg2Of essential,is
R1449 T2354 T2355 arg1Of essential,for
R1450 T2356 T2357 arg1Of IL-2,","
R1451 T2357 T2359 arg1Of ",",","
R1452 T2358 T2357 arg2Of IL-3,","
R1453 T2359 T2362 arg1Of ",",and
R1455 T2360 T2359 arg2Of GM-CSF,","
R1458 T2362 T2355 arg2Of and,for
R1459 T2362 T2361 arg1Of and,","
R1460 T2362 T2365 arg1Of and,in
R1462 T2364 T2362 arg2Of expression,and
R1463 T2364 T2363 arg1Of expression,IFNγ
R1465 T2367 T2365 arg2Of lymphocytes,in
R1466 T2367 T2366 arg1Of lymphocytes,T
R1467 T2369 T2368 arg2Of 30,[
R1468 T2370 T2368 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1547 224-230 Protein denotes GM-CSF
T1546 218-222 Protein denotes IL-3
T1545 212-216 Protein denotes IL-2
T1544 189-194 Protein denotes c-Rel
T1543 150-155 Protein denotes c-Rel

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2752 227-230 http://www.uniprot.org/uniprot/P04141 denotes CSF
T2751 224-230 http://www.uniprot.org/uniprot/P04141 denotes GM-CSF
T2750 212-216 http://www.uniprot.org/uniprot/P60568 denotes IL-2
T2749 189-194 http://www.uniprot.org/uniprot/Q04864 denotes c-Rel
T2748 150-155 http://www.uniprot.org/uniprot/Q04864 denotes c-Rel

UBERON-AE

Id Subject Object Predicate Lexical cue
T1402 98-111 http://purl.obolibrary.org/obo/UBERON_0002405 denotes immune system

GO-BP

Id Subject Object Predicate Lexical cue
T1578 67-73 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T1607 15-30 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression

GO-MF

Id Subject Object Predicate Lexical cue
T1668 218-222 http://purl.obolibrary.org/obo/GO_0005135 denotes IL-3
T1667 212-216 http://purl.obolibrary.org/obo/GO_0005134 denotes IL-2

sentences

Id Subject Object Predicate Lexical cue
T1425 37-138 Sentence denotes Although NF-κB promotes tumor growth, it is required for the immune system to function normally [29].
T1426 139-274 Sentence denotes Studies on c-Rel-deficient mice demonstrated that c-Rel is essential for IL-2, IL-3, GM-CSF, and IFNγ expression in T lymphocytes [30].
T34 37-138 Sentence denotes Although NF-κB promotes tumor growth, it is required for the immune system to function normally [29].
T35 139-274 Sentence denotes Studies on c-Rel-deficient mice demonstrated that c-Rel is essential for IL-2, IL-3, GM-CSF, and IFNγ expression in T lymphocytes [30].

simple1

Id Subject Object Predicate Lexical cue
T1701 224-230 Protein denotes GM-CSF
T1700 218-222 Protein denotes IL-3
T1699 212-216 Protein denotes IL-2
T1698 189-194 Protein denotes c-Rel
T1697 150-155 Protein denotes c-Rel

DLUT931

Id Subject Object Predicate Lexical cue
T2818 241-251 Gene_expression denotes expression
T2817 198-207 Positive_regulation denotes essential
T2816 156-165 Negative_regulation denotes deficient
T2785 224-230 Protein denotes GM-CSF
T2784 218-222 Protein denotes IL-3
T2783 212-216 Protein denotes IL-2
T2782 189-194 Protein denotes c-Rel
T2781 150-155 Protein denotes c-Rel
R1829 T2781 T2816 themeOf c-Rel,deficient
R1833 T2782 T2817 causeOf c-Rel,essential
R1834 T2782 T2817 causeOf c-Rel,essential
R1835 T2782 T2817 causeOf c-Rel,essential
R1837 T2783 T2817 themeOf IL-2,essential
R1838 T2783 T2818 themeOf IL-2,expression
R1839 T2784 T2817 themeOf IL-3,essential
R1840 T2784 T2818 themeOf IL-3,expression
R1842 T2785 T2817 causeOf GM-CSF,essential
R1843 T2785 T2817 causeOf GM-CSF,essential
R1844 T2785 T2818 themeOf GM-CSF,expression
R1845 T2785 T2817 causeOf GM-CSF,essential
R1846 T2785 T2817 causeOf GM-CSF,essential
R1847 T2785 T2817 causeOf GM-CSF,essential
R1855 T2818 T2817 themeOf expression,essential
R1858 T2818 T2817 themeOf expression,essential
R1859 T2818 T2817 themeOf expression,essential
R1860 T2818 T2817 themeOf expression,essential
R1861 T2818 T2817 themeOf expression,essential
R1862 T2818 T2817 themeOf expression,essential

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4342 236-251 Gene_expression denotes IFNγ expression
T4287 46-51 Protein denotes NF-κB
T4279 236-240 Protein denotes IFNγ
T4275 189-194 Protein denotes c-Rel
T4272 224-230 Protein denotes GM-CSF
T4270 212-216 Protein denotes IL-2
T4251 147-155 Protein denotes on c-Rel
T4250 255-273 Entity denotes T lymphocytes [30]
T4233 218-222 Protein denotes IL-3
R3051 T4279 T4342 themeOf IFNγ,IFNγ expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3789 273-274 . denotes .
T3788 272-273 NNP denotes ]
T3787 270-272 CD denotes 30
T3786 269-270 NNP denotes [
T3785 257-268 NNS denotes lymphocytes
T3784 255-256 NNP denotes T
T3783 252-254 IN denotes in
T3782 241-251 NN denotes expression
T3781 236-240 NNP denotes IFNγ
T3780 232-235 CC denotes and
T3779 230-231 , denotes ,
T3778 224-230 NNP denotes GM-CSF
T3777 222-223 , denotes ,
T3776 218-222 NNP denotes IL-3
T3744 37-45 IN denotes Although
T3743 35-36 . denotes .
T3742 34-35 NNP denotes ]
T3741 32-34 CD denotes 28
T3740 31-32 NNP denotes [
T3739 20-30 NN denotes expression
T3738 15-19 NN denotes gene
T3737 5-14 JJ denotes apoptotic
T3775 216-217 , denotes ,
T3774 212-216 NNP denotes IL-2
T3773 208-211 IN denotes for
T3772 198-207 JJ denotes essential
T3771 195-197 VBZ denotes is
T3770 189-194 NNP denotes c-Rel
T3769 184-188 IN denotes that
T3768 171-183 VBD denotes demonstrated
T3767 166-170 NNS denotes mice
T3766 150-165 JJ denotes c-Rel-deficient
T3765 147-149 IN denotes on
T3764 139-146 NNS denotes Studies
T3763 137-138 . denotes .
T3762 136-137 NN denotes ]
T3761 134-136 CD denotes 29
T3760 133-134 JJ denotes [
T3759 124-132 RB denotes normally
T3758 115-123 VB denotes function
T3757 112-114 TO denotes to
T3756 105-111 NN denotes system
T3755 98-104 JJ denotes immune
T3754 94-97 DT denotes the
T3753 90-93 IN denotes for
T3752 81-89 VBN denotes required
T3751 78-80 VBZ denotes is
T3750 75-77 PRP denotes it
T3749 73-74 , denotes ,
T3748 67-73 NN denotes growth
T3747 61-66 NN denotes tumor
T3746 52-60 VBZ denotes promotes
T3745 46-51 JJ denotes NF-κB
R2593 T3737 T3739 amod apoptotic,expression
R2595 T3738 T3739 compound gene,expression
R2597 T3740 T3742 nmod [,]
R2599 T3741 T3742 nummod 28,]
R2600 T3742 T3739 appos ],expression
R2603 T3744 T3746 mark Although,promotes
R2604 T3745 T3746 nsubj NF-κB,promotes
R2605 T3746 T3752 advcl promotes,required
R2606 T3747 T3748 compound tumor,growth
R2607 T3748 T3746 dobj growth,promotes
R2608 T3749 T3752 punct ",",required
R2610 T3750 T3752 nsubjpass it,required
R2611 T3751 T3752 auxpass is,required
R2612 T3752 T3752 ROOT required,required
R2613 T3753 T3752 prep for,required
R2615 T3754 T3756 det the,system
R2616 T3755 T3756 amod immune,system
R2617 T3756 T3753 pobj system,for
R2619 T3757 T3758 aux to,function
R2620 T3758 T3752 advcl function,required
R2621 T3759 T3760 advmod normally,[
R2622 T3760 T3762 amod [,]
R2624 T3761 T3762 nummod 29,]
R2625 T3762 T3758 dobj ],function
R2626 T3763 T3752 punct .,required
R2628 T3764 T3768 nsubj Studies,demonstrated
R2629 T3765 T3764 prep on,Studies
R2630 T3766 T3767 amod c-Rel-deficient,mice
R2631 T3767 T3765 pobj mice,on
R2633 T3768 T3768 ROOT demonstrated,demonstrated
R2634 T3769 T3771 mark that,is
R2635 T3770 T3771 nsubj c-Rel,is
R2637 T3771 T3768 ccomp is,demonstrated
R2638 T3772 T3771 acomp essential,is
R2639 T3773 T3771 prep for,is
R2641 T3774 T3773 pobj IL-2,for
R2642 T3775 T3774 punct ",",IL-2
R2643 T3776 T3774 conj IL-3,IL-2
R2644 T3777 T3776 punct ",",IL-3
R2646 T3778 T3776 conj GM-CSF,IL-3
R2647 T3779 T3778 punct ",",GM-CSF
R2648 T3780 T3778 cc and,GM-CSF
R2650 T3781 T3782 compound IFNγ,expression
R2651 T3782 T3771 attr expression,is
R2652 T3783 T3782 prep in,expression
R2654 T3784 T3785 compound T,lymphocytes
R2655 T3785 T3783 pobj lymphocytes,in
R2656 T3786 T3788 nmod [,]
R2657 T3787 T3788 nummod 30,]
R2658 T3788 T3785 appos ],lymphocytes
R2659 T3789 T3768 punct .,demonstrated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T3010 198-207 Positive_regulation denotes essential
T3009 198-207 Positive_regulation denotes essential
T3008 198-207 Positive_regulation denotes essential
T3007 241-251 Gene_expression denotes expression
T3006 241-251 Gene_expression denotes expression
T3005 241-251 Gene_expression denotes expression
T3004 236-240 Protein denotes IFNγ
T3003 224-230 Protein denotes GM-CSF
T3002 212-222 Protein denotes IL-2, IL-3
T3001 46-51 Protein denotes NF-κB
R1922 T3002 T3005 themeOf "IL-2, IL-3",expression
R1924 T3003 T3006 themeOf GM-CSF,expression
R1925 T3004 T3007 themeOf IFNγ,expression
R1926 T3005 T3008 themeOf expression,essential
R1927 T3006 T3009 themeOf expression,essential
R1928 T3007 T3010 themeOf expression,essential