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PMC:3342329 / 394-684 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T92 92-96 Protein denotes CCR5
T67 92-96 Protein denotes CCR5

testone

Id Subject Object Predicate Lexical cue
T31 92-96 Protein denotes CCR5

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T623 92-96 Protein denotes CCR5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T749 92-96 Protein denotes CCR5

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T361 272-283 JJ denotes Significant
T360 264-270 NN denotes growth
T359 258-263 NN denotes tumor
T358 254-257 CC denotes and
T357 252-253 -COMMA- denotes ,
T356 243-252 NN denotes apoptosis
T355 241-242 -COMMA- denotes ,
T354 235-241 NN denotes growth
T353 230-234 NN denotes cell
T352 220-229 VB denotes involving
T351 214-219 NN denotes genes
T350 211-213 IN denotes of
T349 200-210 NN denotes regulation
T348 196-199 DT denotes the
T347 193-195 IN denotes in
T346 186-192 NN denotes factor
T345 172-185 NN denotes transcription
T344 161-171 VB denotes implicated
T343 158-160 DT denotes an
T342 155-157 VB denotes is
T341 152-154 PRP denotes it
T340 146-151 IN denotes since
T339 140-145 NN denotes NF-κB
T338 137-139 IN denotes of
T337 126-136 NN denotes activation
T336 122-125 DT denotes the
T335 109-121 VB denotes investigated
T334 106-108 PRP denotes We
T333 100-104 NN denotes mice
T332 92-99 JJ denotes CCR5+/+
T331 89-91 TO denotes to
T330 80-88 VB denotes compared
T329 75-79 WRB denotes when
T328 70-74 NN denotes rate
T327 61-69 NN denotes survival
T326 51-60 VB denotes increased
T325 47-50 CC denotes and
T324 45-46 -COMMA- denotes ,
T323 39-45 NN denotes weight
T322 33-38 NN denotes tumor
T321 31-32 -COMMA- denotes ,
T320 25-31 NN denotes volume
T319 19-24 NN denotes tumor
T318 11-18 VB denotes reduced
T317 4-10 VB denotes showed
R100 T317 T329 arg1Of showed,when
R101 T320 T318 arg2Of volume,reduced
R102 T320 T319 arg1Of volume,tumor
R103 T320 T321 arg1Of volume,","
R104 T321 T325 arg1Of ",",and
R105 T323 T321 arg2Of weight,","
R106 T323 T322 arg1Of weight,tumor
R107 T325 T317 arg2Of and,showed
R108 T325 T324 arg1Of and,","
R109 T328 T325 arg2Of rate,and
R110 T328 T326 arg2Of rate,increased
R111 T328 T327 arg1Of rate,survival
R112 T330 T329 arg2Of compared,when
R113 T330 T331 arg1Of compared,to
R114 T333 T331 arg2Of mice,to
R115 T333 T332 arg1Of mice,CCR5+/+
R116 T334 T335 arg1Of We,investigated
R117 T335 T340 arg1Of investigated,since
R118 T337 T335 arg2Of activation,investigated
R119 T337 T336 arg1Of activation,the
R120 T337 T338 arg1Of activation,of
R121 T339 T338 arg2Of NF-κB,of
R122 T341 T342 arg1Of it,is
R123 T342 T340 arg2Of is,since
R124 T346 T342 arg2Of factor,is
R125 T346 T343 arg1Of factor,an
R126 T346 T344 arg2Of factor,implicated
R127 T346 T345 arg1Of factor,transcription
R128 T346 T347 arg1Of factor,in
R129 T349 T347 arg2Of regulation,in
R130 T349 T348 arg1Of regulation,the
R131 T349 T350 arg1Of regulation,of
R132 T351 T350 arg2Of genes,of
R133 T351 T352 arg1Of genes,involving
R134 T354 T353 arg1Of growth,cell
R135 T354 T355 arg1Of growth,","
R136 T355 T358 arg1Of ",",and
R137 T356 T355 arg2Of apoptosis,","
R138 T358 T352 arg2Of and,involving
R139 T358 T357 arg1Of and,","
R140 T360 T358 arg2Of growth,and
R141 T360 T359 arg1Of growth,tumor

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T173 92-96 Protein denotes CCR5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T539 92-96 http://www.uniprot.org/uniprot/P51681 denotes CCR5

GO-BP

Id Subject Object Predicate Lexical cue
T200 243-252 http://purl.obolibrary.org/obo/GO_0097194 denotes apoptosis
T198 243-252 http://purl.obolibrary.org/obo/GO_0006915 denotes apoptosis
T197 230-241 http://purl.obolibrary.org/obo/GO_0016049 denotes cell growth
T196 200-210 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T195 172-210 http://purl.obolibrary.org/obo/GO_0051090 denotes transcription factor in the regulation
T194 172-210 http://purl.obolibrary.org/obo/GO_1901483 denotes transcription factor in the regulation
T193 172-185 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T192 126-145 http://purl.obolibrary.org/obo/GO_0051092 denotes activation of NF-κB
T190 264-270 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T189 235-241 http://purl.obolibrary.org/obo/GO_0040007 denotes growth

GO-CC

Id Subject Object Predicate Lexical cue
T210 230-234 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T123 106-271 Sentence denotes We investigated the activation of NF-κB since it is an implicated transcription factor in the regulation of genes involving cell growth, apoptosis, and tumor growth.
T6 106-271 Sentence denotes We investigated the activation of NF-κB since it is an implicated transcription factor in the regulation of genes involving cell growth, apoptosis, and tumor growth.

simple1

Id Subject Object Predicate Lexical cue
T246 92-96 Protein denotes CCR5

DLUT931

Id Subject Object Predicate Lexical cue
T563 92-96 Protein denotes CCR5

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T817 196-270 Regulation denotes the regulation of genes involving cell growth, apoptosis, and tumor growth
T814 106-185 Positive_regulation denotes We investigated the activation of NF-κB since it is an implicated transcription
T802 89-104 Protein denotes to CCR5+/+ mice
T797 137-145 Protein denotes of NF-κB
T778 211-270 Protein denotes of genes involving cell growth, apoptosis, and tumor growth
R419 T778 T817 themeOf "of genes involving cell growth, apoptosis, and tumor growth","the regulation of genes involving cell growth, apoptosis, and tumor growth"
R422 T797 T814 themeOf of NF-κB,We investigated the activation of NF-κB since it is an implicated transcription

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T938 272-283 JJ denotes Significant
T937 270-271 . denotes .
T936 264-270 NN denotes growth
T935 258-263 NN denotes tumor
T934 254-257 CC denotes and
T933 252-253 , denotes ,
T932 243-252 NN denotes apoptosis
T931 241-242 , denotes ,
T930 235-241 NN denotes growth
T929 230-234 NN denotes cell
T928 220-229 VBG denotes involving
T927 214-219 NNS denotes genes
T926 211-213 IN denotes of
T925 200-210 NN denotes regulation
T924 196-199 DT denotes the
T923 193-195 IN denotes in
T922 186-192 NN denotes factor
T921 172-185 NN denotes transcription
T920 161-171 VBN denotes implicated
T919 158-160 DT denotes an
T918 155-157 VBZ denotes is
T917 152-154 PRP denotes it
T916 146-151 IN denotes since
T915 140-145 NN denotes NF-κB
T914 137-139 IN denotes of
T913 126-136 NN denotes activation
T912 122-125 DT denotes the
T911 109-121 VBD denotes investigated
T910 106-108 PRP denotes We
T909 104-105 . denotes .
T908 100-104 NNS denotes mice
T907 98-99 NN denotes +
T906 97-98 NN denotes /
T905 96-97 CD denotes +
T904 92-96 CD denotes CCR5
T903 89-91 TO denotes to
T902 80-88 VBN denotes compared
T901 75-79 WRB denotes when
T900 70-74 NN denotes rate
T899 61-69 NN denotes survival
T898 51-60 VBD denotes increased
T897 47-50 CC denotes and
T896 45-46 , denotes ,
T895 39-45 NN denotes weight
T894 33-38 NN denotes tumor
T893 31-32 , denotes ,
T892 25-31 NN denotes volume
T891 19-24 NN denotes tumor
T890 11-18 VBN denotes reduced
T889 4-10 VBD denotes showed
R494 T889 T889 ROOT showed,showed
R495 T890 T892 amod reduced,volume
R496 T891 T892 compound tumor,volume
R497 T892 T889 dobj volume,showed
R498 T893 T892 punct ",",volume
R499 T894 T895 compound tumor,weight
R500 T895 T892 conj weight,volume
R501 T896 T889 punct ",",showed
R502 T897 T889 cc and,showed
R503 T898 T900 amod increased,rate
R504 T899 T900 compound survival,rate
R505 T900 T902 dobj rate,compared
R506 T901 T902 advmod when,compared
R507 T902 T889 conj compared,showed
R508 T903 T902 prep to,compared
R509 T904 T908 nummod CCR5,mice
R510 T905 T908 nummod +,mice
R511 T906 T908 compound /,mice
R512 T907 T908 compound +,mice
R513 T908 T903 pobj mice,to
R514 T909 T889 punct .,showed
R515 T910 T911 nsubj We,investigated
R516 T911 T911 ROOT investigated,investigated
R517 T912 T913 det the,activation
R518 T913 T911 dobj activation,investigated
R519 T914 T913 prep of,activation
R520 T915 T914 pobj NF-κB,of
R521 T916 T918 mark since,is
R522 T917 T918 nsubj it,is
R523 T918 T911 advcl is,investigated
R524 T919 T922 det an,factor
R525 T920 T922 amod implicated,factor
R526 T921 T922 compound transcription,factor
R527 T922 T918 attr factor,is
R528 T923 T922 prep in,factor
R529 T924 T925 det the,regulation
R530 T925 T923 pobj regulation,in
R531 T926 T925 prep of,regulation
R532 T927 T926 pobj genes,of
R533 T928 T927 acl involving,genes
R534 T929 T930 compound cell,growth
R535 T930 T928 dobj growth,involving
R536 T931 T930 punct ",",growth
R537 T932 T930 conj apoptosis,growth
R538 T933 T932 punct ",",apoptosis
R539 T934 T932 cc and,apoptosis
R540 T935 T936 compound tumor,growth
R541 T936 T932 conj growth,apoptosis
R542 T937 T911 punct .,investigated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T653 92-96 Protein denotes CCR5
T655 126-136 Positive_regulation denotes activation
T654 140-145 Protein denotes NF-κB
R351 T654 T655 themeOf NF-κB,activation