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PMC:3342329 / 367-588 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T92 119-123 Protein denotes CCR5
T91 18-22 Protein denotes CCR5
T90 3-7 Protein denotes CCR5
T67 119-123 Protein denotes CCR5
T66 18-22 Protein denotes CCR5
T65 3-7 Protein denotes CCR5

testone

Id Subject Object Predicate Lexical cue
T31 119-123 Protein denotes CCR5
T30 18-22 Protein denotes CCR5
T29 3-7 Protein denotes CCR5

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T623 119-123 Protein denotes CCR5
T622 18-22 Protein denotes CCR5
T621 3-7 Protein denotes CCR5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T749 119-123 Protein denotes CCR5
T748 18-22 Protein denotes CCR5
T747 3-7 Protein denotes CCR5

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T346 213-219 NN denotes factor
T345 199-212 NN denotes transcription
T344 188-198 VB denotes implicated
T343 185-187 DT denotes an
T342 182-184 VB denotes is
T341 179-181 PRP denotes it
T340 173-178 IN denotes since
T339 167-172 NN denotes NF-κB
T338 164-166 IN denotes of
T337 153-163 NN denotes activation
T336 149-152 DT denotes the
T335 136-148 VB denotes investigated
T334 133-135 PRP denotes We
T333 127-131 NN denotes mice
T332 119-126 JJ denotes CCR5+/+
T331 116-118 TO denotes to
T330 107-115 VB denotes compared
T329 102-106 WRB denotes when
T328 97-101 NN denotes rate
T327 88-96 NN denotes survival
T326 78-87 VB denotes increased
T325 74-77 CC denotes and
T324 72-73 -COMMA- denotes ,
T323 66-72 NN denotes weight
T322 60-65 NN denotes tumor
T321 58-59 -COMMA- denotes ,
T320 52-58 NN denotes volume
T319 46-51 NN denotes tumor
T318 38-45 VB denotes reduced
T317 31-37 VB denotes showed
T316 26-30 NN denotes mice
T315 18-25 NN denotes CCR5−/−
T314 12-16 NN denotes mice
T313 10-11 -RRB- denotes )
T312 3-10 NN denotes CCR5+/+
T311 2-3 -LRB- denotes (
R93 T312 T311 arg2Of CCR5+/+,(
R94 T313 T311 arg3Of ),(
R97 T316 T315 arg1Of mice,CCR5−/−
R98 T316 T317 arg1Of mice,showed
R99 T316 T330 arg1Of mice,compared
R100 T317 T329 arg1Of showed,when
R101 T320 T318 arg2Of volume,reduced
R102 T320 T319 arg1Of volume,tumor
R103 T320 T321 arg1Of volume,","
R104 T321 T325 arg1Of ",",and
R105 T323 T321 arg2Of weight,","
R106 T323 T322 arg1Of weight,tumor
R107 T325 T317 arg2Of and,showed
R108 T325 T324 arg1Of and,","
R109 T328 T325 arg2Of rate,and
R110 T328 T326 arg2Of rate,increased
R111 T328 T327 arg1Of rate,survival
R112 T330 T329 arg2Of compared,when
R113 T330 T331 arg1Of compared,to
R114 T333 T331 arg2Of mice,to
R115 T333 T332 arg1Of mice,CCR5+/+
R116 T334 T335 arg1Of We,investigated
R117 T335 T340 arg1Of investigated,since
R118 T337 T335 arg2Of activation,investigated
R119 T337 T336 arg1Of activation,the
R120 T337 T338 arg1Of activation,of
R121 T339 T338 arg2Of NF-κB,of
R122 T341 T342 arg1Of it,is
R123 T342 T340 arg2Of is,since
R124 T346 T342 arg2Of factor,is
R125 T346 T343 arg1Of factor,an
R126 T346 T344 arg2Of factor,implicated
R127 T346 T345 arg1Of factor,transcription

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T173 119-123 Protein denotes CCR5
T172 18-22 Protein denotes CCR5
T171 3-7 Protein denotes CCR5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T539 119-123 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T538 18-22 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T537 3-7 http://www.uniprot.org/uniprot/P51681 denotes CCR5

GO-BP

Id Subject Object Predicate Lexical cue
T193 199-212 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T192 153-172 http://purl.obolibrary.org/obo/GO_0051092 denotes activation of NF-κB

sentences

Id Subject Object Predicate Lexical cue
T122 18-132 Sentence denotes CCR5−/− mice showed reduced tumor volume, tumor weight, and increased survival rate when compared to CCR5+/+ mice.
T5 18-132 Sentence denotes CCR5−/− mice showed reduced tumor volume, tumor weight, and increased survival rate when compared to CCR5+/+ mice.

simple1

Id Subject Object Predicate Lexical cue
T246 119-123 Protein denotes CCR5
T245 18-22 Protein denotes CCR5
T244 3-7 Protein denotes CCR5

DLUT931

Id Subject Object Predicate Lexical cue
T563 119-123 Protein denotes CCR5
T562 18-22 Protein denotes CCR5
T561 3-7 Protein denotes CCR5

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T814 133-212 Positive_regulation denotes We investigated the activation of NF-κB since it is an implicated transcription
T802 116-131 Protein denotes to CCR5+/+ mice
T797 164-172 Protein denotes of NF-κB
T794 26-30 Protein denotes mice
R422 T797 T814 themeOf of NF-κB,We investigated the activation of NF-κB since it is an implicated transcription

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T922 213-219 NN denotes factor
T921 199-212 NN denotes transcription
T920 188-198 VBN denotes implicated
T919 185-187 DT denotes an
T918 182-184 VBZ denotes is
T917 179-181 PRP denotes it
T916 173-178 IN denotes since
T915 167-172 NN denotes NF-κB
T914 164-166 IN denotes of
T913 153-163 NN denotes activation
T912 149-152 DT denotes the
T911 136-148 VBD denotes investigated
T910 133-135 PRP denotes We
T909 131-132 . denotes .
T908 127-131 NNS denotes mice
T907 125-126 NN denotes +
T906 124-125 NN denotes /
T905 123-124 CD denotes +
T904 119-123 CD denotes CCR5
T903 116-118 TO denotes to
T902 107-115 VBN denotes compared
T901 102-106 WRB denotes when
T900 97-101 NN denotes rate
T899 88-96 NN denotes survival
T898 78-87 VBD denotes increased
T897 74-77 CC denotes and
T896 72-73 , denotes ,
T895 66-72 NN denotes weight
T894 60-65 NN denotes tumor
T893 58-59 , denotes ,
T892 52-58 NN denotes volume
T891 46-51 NN denotes tumor
T890 38-45 VBN denotes reduced
T889 31-37 VBD denotes showed
T888 26-30 NNS denotes mice
T887 24-25 NN denotes −
T886 23-24 NN denotes /
T885 22-23 CD denotes −
T884 18-22 CD denotes CCR5
T883 16-17 . denotes .
T882 12-16 NNS denotes mice
T881 10-11 -RRB- denotes )
T880 9-10 NN denotes +
T879 8-9 NN denotes /
T878 7-8 CD denotes +
T877 3-7 CD denotes CCR5
T876 2-3 -LRB- denotes (
R481 T876 T880 punct (,+
R482 T877 T880 nummod CCR5,+
R483 T878 T880 nummod +,+
R484 T879 T880 compound /,+
R486 T881 T880 punct ),+
R489 T884 T888 nummod CCR5,mice
R490 T885 T888 nummod −,mice
R491 T886 T888 compound /,mice
R492 T887 T888 compound −,mice
R493 T888 T889 nsubj mice,showed
R494 T889 T889 ROOT showed,showed
R495 T890 T892 amod reduced,volume
R496 T891 T892 compound tumor,volume
R497 T892 T889 dobj volume,showed
R498 T893 T892 punct ",",volume
R499 T894 T895 compound tumor,weight
R500 T895 T892 conj weight,volume
R501 T896 T889 punct ",",showed
R502 T897 T889 cc and,showed
R503 T898 T900 amod increased,rate
R504 T899 T900 compound survival,rate
R505 T900 T902 dobj rate,compared
R506 T901 T902 advmod when,compared
R507 T902 T889 conj compared,showed
R508 T903 T902 prep to,compared
R509 T904 T908 nummod CCR5,mice
R510 T905 T908 nummod +,mice
R511 T906 T908 compound /,mice
R512 T907 T908 compound +,mice
R513 T908 T903 pobj mice,to
R514 T909 T889 punct .,showed
R515 T910 T911 nsubj We,investigated
R516 T911 T911 ROOT investigated,investigated
R517 T912 T913 det the,activation
R518 T913 T911 dobj activation,investigated
R519 T914 T913 prep of,activation
R520 T915 T914 pobj NF-κB,of
R521 T916 T918 mark since,is
R522 T917 T918 nsubj it,is
R523 T918 T911 advcl is,investigated
R524 T919 T922 det an,factor
R525 T920 T922 amod implicated,factor
R526 T921 T922 compound transcription,factor
R527 T922 T918 attr factor,is

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T653 119-123 Protein denotes CCR5
T655 153-163 Positive_regulation denotes activation
T654 167-172 Protein denotes NF-κB
R351 T654 T655 themeOf NF-κB,activation