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PMC:3342329 / 35476-35896 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T16969 173-177 Protein denotes CCR5
T16968 156-160 Protein denotes CCR5
T16967 173-177 Protein denotes CCR5
T16966 156-160 Protein denotes CCR5

testone

Id Subject Object Predicate Lexical cue
T16965 173-177 Protein denotes CCR5
T16964 156-160 Protein denotes CCR5

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T17071 173-177 Protein denotes CCR5
T17070 156-160 Protein denotes CCR5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T17063 173-177 Protein denotes CCR5
T17062 156-160 Protein denotes CCR5

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T17059 414-419 NNP denotes Prism
T17058 405-413 NNP denotes GraphPad
T17057 402-404 IN denotes in
T17056 397-401 NN denotes Test
T17055 395-396 -RRB- denotes )
T17054 385-395 JJ denotes Mantel-Cox
T17053 384-385 -LRB- denotes (
T17052 375-383 NNP denotes Log-rank
T17051 372-374 IN denotes by
T17050 361-371 VB denotes calculated
T17049 357-360 CC denotes and
T17048 348-356 VB denotes compared
T17047 344-347 CC denotes and
T17046 334-343 NN denotes estimates
T17045 325-333 NN denotes survival
T17044 312-324 NNP denotes Kaplan-Meier
T17043 309-311 IN denotes by
T17042 299-308 VB denotes presented
T17041 294-298 VB denotes were
T17040 289-293 NN denotes data
T17039 280-288 NN denotes Survival
T17038 267-278 JJ denotes significant
T17037 253-266 RB denotes statistically
T17036 250-252 VB denotes be
T17035 247-249 TO denotes to
T17034 236-246 VB denotes considered
T17033 232-235 VB denotes was
T17032 227-231 CD denotes 0.05
T17031 226-227 SYM denotes <
T17030 225-226 NN denotes p
T17029 222-224 IN denotes of
T17028 216-221 NN denotes value
T17027 214-215 DT denotes A
T17026 208-212 NN denotes test
T17025 206-207 NN denotes t
T17024 200-205 VB denotes using
T17023 191-199 VB denotes compared
T17022 186-190 VB denotes were
T17021 181-185 NN denotes mice
T17020 173-180 JJ denotes CCR5+/+
T17019 169-172 CC denotes and
T17018 164-168 NN denotes mice
T17017 156-163 NN denotes CCR5−/−
T17016 148-155 IN denotes between
T17015 137-147 NN denotes Difference
T17014 133-135 NN denotes SD
T17013 131-132 NN denotes ±
T17012 126-130 JJ denotes mean
T17011 123-125 IN denotes as
T17010 113-122 VB denotes presented
T17009 109-112 VB denotes are
T17008 104-108 NN denotes Data
T17007 101-102 -RRB- denotes )
T17006 99-101 NNP denotes CA
T17005 97-98 -COMMA- denotes ,
T17004 92-97 NNP denotes Jolla
T17003 89-91 NNP denotes La
T17002 87-88 -COMMA- denotes ,
T17001 79-87 NNP denotes Software
T17000 70-78 NNP denotes GraphPad
T16999 69-70 -LRB- denotes (
T16998 60-68 NN denotes software
T16997 55-59 CD denotes 4.03
T16996 50-53 NN denotes ver
T16995 48-49 CD denotes 4
T16994 42-47 NNP denotes Prism
T16993 33-41 NNP denotes GraphPad
T16992 29-32 DT denotes the
T16991 23-28 VB denotes using
T16990 14-22 VB denotes analyzed
T16989 9-13 VB denotes were
T16988 4-8 NN denotes data
T16987 0-3 DT denotes The
R12260 T16988 T16987 arg1Of data,The
R12261 T16988 T16989 arg1Of data,were
R12262 T16988 T16990 arg2Of data,analyzed
R12263 T16990 T16989 arg2Of analyzed,were
R12264 T16991 T16990 arg3Of using,analyzed
R12265 T16994 T16993 arg1Of Prism,GraphPad
R12266 T16994 T16995 arg1Of Prism,4
R12267 T16996 T16991 arg2Of ver,using
R12268 T16996 T16992 arg1Of ver,the
R12269 T16996 T16994 arg1Of ver,Prism
R12270 T16998 T16997 arg1Of software,4.03
R12271 T16998 T16999 arg1Of software,(
R12272 T17001 T16999 arg2Of Software,(
R12273 T17001 T17000 arg1Of Software,GraphPad
R12274 T17001 T17002 arg1Of Software,","
R12275 T17004 T17002 arg2Of Jolla,","
R12276 T17004 T17003 arg1Of Jolla,La
R12277 T17004 T17005 arg1Of Jolla,","
R12278 T17006 T17005 arg2Of CA,","
R12279 T17007 T16999 arg3Of ),(
R12280 T17008 T17009 arg1Of Data,are
R12281 T17008 T17010 arg2Of Data,presented
R12282 T17010 T17009 arg2Of presented,are
R12283 T17010 T17011 arg1Of presented,as
R12284 T17014 T17011 arg2Of SD,as
R12285 T17014 T17012 arg1Of SD,mean
R12286 T17014 T17013 arg1Of SD,±
R12287 T17015 T17016 arg1Of Difference,between
R12288 T17015 T17022 arg1Of Difference,were
R12289 T17015 T17023 arg2Of Difference,compared
R12290 T17018 T17017 arg1Of mice,CCR5−/−
R12291 T17018 T17019 arg1Of mice,and
R12292 T17019 T17016 arg2Of and,between
R12293 T17021 T17019 arg2Of mice,and
R12294 T17021 T17020 arg1Of mice,CCR5+/+
R12295 T17023 T17022 arg2Of compared,were
R12296 T17023 T17024 modOf compared,using
R12297 T17026 T17024 arg2Of test,using
R12298 T17026 T17025 arg1Of test,t
R12299 T17028 T17027 arg1Of value,A
R12300 T17028 T17029 arg1Of value,of
R12301 T17028 T17033 arg1Of value,was
R12302 T17028 T17034 arg2Of value,considered
R12303 T17028 T17036 arg1Of value,be
R12304 T17028 T17038 arg1Of value,significant
R12305 T17030 T17029 arg2Of p,of
R12306 T17030 T17032 arg1Of p,0.05
R12307 T17032 T17031 arg1Of 0.05,<
R12308 T17034 T17033 arg2Of considered,was
R12309 T17036 T17034 arg3Of be,considered
R12310 T17036 T17035 arg1Of be,to
R12311 T17038 T17036 arg2Of significant,be
R12312 T17038 T17037 arg1Of significant,statistically
R12313 T17040 T17039 arg1Of data,Survival
R12314 T17040 T17041 arg1Of data,were
R12315 T17040 T17042 arg2Of data,presented
R12316 T17040 T17048 arg2Of data,compared
R12317 T17040 T17050 arg2Of data,calculated
R12318 T17042 T17047 arg1Of presented,and
R12319 T17046 T17042 arg1Of estimates,presented
R12320 T17046 T17043 arg2Of estimates,by
R12321 T17046 T17044 arg1Of estimates,Kaplan-Meier
R12322 T17046 T17045 arg1Of estimates,survival
R12323 T17047 T17041 arg2Of and,were
R12324 T17048 T17049 arg1Of compared,and
R12325 T17049 T17047 arg2Of and,and
R12326 T17050 T17049 arg2Of calculated,and
R12327 T17054 T17053 arg2Of Mantel-Cox,(
R12328 T17055 T17053 arg3Of ),(
R12329 T17056 T17048 arg1Of Test,compared
R12330 T17056 T17050 arg1Of Test,calculated
R12331 T17056 T17051 arg2Of Test,by
R12332 T17056 T17052 arg1Of Test,Log-rank
R12333 T17056 T17053 arg1Of Test,(
R12334 T17056 T17057 arg1Of Test,in
R12335 T17059 T17057 arg2Of Prism,in
R12336 T17059 T17058 arg1Of Prism,GraphPad

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T16980 173-177 Protein denotes CCR5
T16979 156-160 Protein denotes CCR5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T17065 173-177 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T17064 156-160 http://www.uniprot.org/uniprot/P51681 denotes CCR5

GO-BP

Id Subject Object Predicate Lexical cue
T16981 99-101 http://purl.obolibrary.org/obo/GO_0033968 denotes CA

GO-MF

Id Subject Object Predicate Lexical cue
T16982 99-101 http://purl.obolibrary.org/obo/GO_0033968 denotes CA

sentences

Id Subject Object Predicate Lexical cue
T16976 280-420 Sentence denotes Survival data were presented by Kaplan-Meier survival estimates and compared and calculated by Log-rank (Mantel-Cox) Test in GraphPad Prism.
T16975 214-279 Sentence denotes A value of p<0.05 was considered to be statistically significant.
T16974 137-213 Sentence denotes Difference between CCR5−/− mice and CCR5+/+ mice were compared using t test.
T16973 104-136 Sentence denotes Data are presented as mean ± SD.
T16972 55-103 Sentence denotes 4.03 software (GraphPad Software, La Jolla, CA).
T16971 0-54 Sentence denotes The data were analyzed using the GraphPad Prism 4 ver.
T267 0-54 Sentence denotes The data were analyzed using the GraphPad Prism 4 ver.
T268 55-103 Sentence denotes 4.03 software (GraphPad Software, La Jolla, CA).
T269 104-136 Sentence denotes Data are presented as mean ± SD.
T270 137-213 Sentence denotes Difference between CCR5−/− mice and CCR5+/+ mice were compared using t test.
T271 214-279 Sentence denotes A value of p<0.05 was considered to be statistically significant.
T272 280-420 Sentence denotes Survival data were presented by Kaplan-Meier survival estimates and compared and calculated by Log-rank (Mantel-Cox) Test in GraphPad Prism.

simple1

Id Subject Object Predicate Lexical cue
T16984 173-177 Protein denotes CCR5
T16983 156-160 Protein denotes CCR5

DLUT931

Id Subject Object Predicate Lexical cue
T17067 173-177 Protein denotes CCR5
T17066 156-160 Protein denotes CCR5

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T17080 173-185 Protein denotes CCR5+/+ mice
T17079 206-207 Entity denotes t
T17078 75-78 Protein denotes Pad
T17077 164-168 Protein denotes mice
T17076 89-91 Protein denotes La
T17075 385-395 Protein denotes Mantel-Cox
T17074 405-419 Protein denotes GraphPad Prism

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T17167 419-420 . denotes .
T17166 414-419 NNP denotes Prism
T17153 334-343 NNS denotes estimates
T17152 325-333 NN denotes survival
T17151 312-324 NNP denotes Kaplan-Meier
T17150 309-311 IN denotes by
T17149 299-308 VBN denotes presented
T17148 294-298 VBD denotes were
T17147 289-293 NNS denotes data
T17146 280-288 NN denotes Survival
T17145 278-279 . denotes .
T17144 267-278 JJ denotes significant
T17143 253-266 RB denotes statistically
T17142 250-252 VB denotes be
T17141 247-249 TO denotes to
T17140 236-246 VBN denotes considered
T17139 232-235 VBD denotes was
T17138 227-231 CD denotes 0.05
T17137 226-227 NN denotes <
T17136 225-226 NN denotes p
T17135 222-224 IN denotes of
T17134 216-221 NN denotes value
T17133 214-215 DT denotes A
T17132 212-213 . denotes .
T17131 208-212 NN denotes test
T17130 206-207 JJ denotes t
T17129 200-205 VBG denotes using
T17128 191-199 VBN denotes compared
T17127 186-190 VBD denotes were
T17126 181-185 NNS denotes mice
T17125 179-180 CD denotes +
T17124 178-179 CD denotes /
T17123 177-178 VBP denotes +
T17122 173-177 NNS denotes CCR5
T17121 169-172 CC denotes and
T17120 164-168 NNS denotes mice
T17119 162-163 NN denotes
T17118 161-162 NN denotes /
T17117 160-161 CD denotes
T17116 156-160 CD denotes CCR5
T17115 148-155 IN denotes between
T17114 137-147 NN denotes Difference
T17113 135-136 . denotes .
T17112 133-135 NNP denotes SD
T17111 131-132 NN denotes ±
T17110 126-130 JJ denotes mean
T17109 123-125 IN denotes as
T17108 113-122 VBN denotes presented
T17107 109-112 VBP denotes are
T17106 104-108 NNS denotes Data
T17105 102-103 . denotes .
T17104 101-102 -RRB- denotes )
T17103 99-101 NNP denotes CA
T17102 97-98 , denotes ,
T17101 92-97 NNP denotes Jolla
T17100 89-91 NNP denotes La
T17099 87-88 , denotes ,
T17098 79-87 NNP denotes Software
T17097 70-78 NNP denotes GraphPad
T17096 69-70 -LRB- denotes (
T17095 60-68 NN denotes software
T17094 55-59 CD denotes 4.03
T17093 53-54 . denotes .
T17092 50-53 NN denotes ver
T17091 48-49 CD denotes 4
T17090 42-47 NNP denotes Prism
T17089 33-41 NNP denotes GraphPad
T17088 29-32 DT denotes the
T17087 23-28 VBG denotes using
T17086 14-22 VBN denotes analyzed
T17085 9-13 VBD denotes were
T17084 4-8 NNS denotes data
T17083 0-3 NNP denotes The
T17165 405-413 NNP denotes GraphPad
T17164 402-404 IN denotes in
T17163 397-401 NN denotes Test
T17162 395-396 -RRB- denotes )
T17161 385-395 NNP denotes Mantel-Cox
T17160 384-385 -LRB- denotes (
T17159 375-383 JJ denotes Log-rank
T17158 372-374 IN denotes by
T17157 361-371 VBN denotes calculated
T17156 357-360 CC denotes and
T17155 348-356 VBN denotes compared
T17154 344-347 CC denotes and
R12339 T17083 T17084 det The,data
R12340 T17084 T17086 nsubjpass data,analyzed
R12341 T17085 T17086 auxpass were,analyzed
R12342 T17086 T17086 ROOT analyzed,analyzed
R12343 T17087 T17086 advcl using,analyzed
R12344 T17088 T17092 det the,ver
R12345 T17089 T17090 compound GraphPad,Prism
R12346 T17090 T17092 nmod Prism,ver
R12347 T17091 T17090 nummod 4,Prism
R12348 T17092 T17087 dobj ver,using
R12349 T17093 T17086 punct .,analyzed
R12350 T17094 T17095 nummod 4.03,software
R12351 T17095 T17095 ROOT software,software
R12352 T17096 T17098 punct (,Software
R12353 T17097 T17098 compound GraphPad,Software
R12354 T17098 T17095 appos Software,software
R12355 T17099 T17098 punct ",",Software
R12356 T17100 T17101 compound La,Jolla
R12357 T17101 T17098 npadvmod Jolla,Software
R12358 T17102 T17101 punct ",",Jolla
R12359 T17103 T17098 appos CA,Software
R12360 T17104 T17098 punct ),Software
R12361 T17105 T17095 punct .,software
R12362 T17106 T17108 nsubjpass Data,presented
R12363 T17107 T17108 auxpass are,presented
R12364 T17108 T17108 ROOT presented,presented
R12365 T17109 T17108 prep as,presented
R12366 T17110 T17112 amod mean,SD
R12367 T17111 T17112 compound ±,SD
R12368 T17112 T17109 pobj SD,as
R12369 T17113 T17108 punct .,presented
R12370 T17114 T17128 nsubjpass Difference,compared
R12371 T17115 T17114 prep between,Difference
R12372 T17116 T17120 nummod CCR5,mice
R12373 T17117 T17120 nummod −,mice
R12374 T17118 T17120 nmod /,mice
R12375 T17119 T17120 compound −,mice
R12376 T17120 T17115 pobj mice,between
R12377 T17121 T17120 cc and,mice
R12378 T17122 T17120 conj CCR5,mice
R12379 T17123 T17128 amod +,compared
R12380 T17124 T17126 nummod /,mice
R12381 T17125 T17126 nummod +,mice
R12382 T17126 T17128 nsubjpass mice,compared
R12383 T17127 T17128 auxpass were,compared
R12384 T17128 T17128 ROOT compared,compared
R12385 T17129 T17128 advcl using,compared
R12386 T17130 T17131 compound t,test
R12387 T17131 T17129 dobj test,using
R12388 T17132 T17128 punct .,compared
R12389 T17133 T17134 det A,value
R12390 T17134 T17140 nsubjpass value,considered
R12391 T17135 T17134 prep of,value
R12392 T17136 T17137 compound p,<
R12393 T17137 T17138 compound <,0.05
R12394 T17138 T17135 pobj 0.05,of
R12395 T17139 T17140 auxpass was,considered
R12396 T17140 T17140 ROOT considered,considered
R12397 T17141 T17142 aux to,be
R12398 T17142 T17140 xcomp be,considered
R12399 T17143 T17144 advmod statistically,significant
R12400 T17144 T17142 acomp significant,be
R12401 T17145 T17140 punct .,considered
R12402 T17146 T17147 compound Survival,data
R12403 T17147 T17149 nsubjpass data,presented
R12404 T17148 T17149 auxpass were,presented
R12405 T17149 T17149 ROOT presented,presented
R12406 T17150 T17149 agent by,presented
R12407 T17151 T17153 compound Kaplan-Meier,estimates
R12408 T17152 T17153 compound survival,estimates
R12409 T17153 T17150 pobj estimates,by
R12410 T17154 T17149 cc and,presented
R12411 T17155 T17149 conj compared,presented
R12412 T17156 T17155 cc and,compared
R12413 T17157 T17155 conj calculated,compared
R12414 T17158 T17157 agent by,calculated
R12415 T17159 T17163 amod Log-rank,Test
R12416 T17160 T17161 punct (,Mantel-Cox
R12417 T17161 T17159 appos Mantel-Cox,Log-rank
R12418 T17162 T17161 punct ),Mantel-Cox
R12419 T17163 T17158 pobj Test,by
R12420 T17164 T17157 prep in,calculated
R12421 T17165 T17166 compound GraphPad,Prism
R12422 T17166 T17164 pobj Prism,in
R12423 T17167 T17149 punct .,presented

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T17072 33-53 Protein denotes GraphPad Prism 4 ver