PMC:3342329 / 3520-3602 JSONTXT

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    test3

    {"project":"test3","denotations":[{"id":"T1345","span":{"begin":22,"end":29},"obj":"Negative_regulation"},{"id":"T1344","span":{"begin":7,"end":17},"obj":"Gene_expression"},{"id":"T1343","span":{"begin":0,"end":6},"obj":"Protein"},{"id":"T1295","span":{"begin":0,"end":6},"obj":"Protein"}],"relations":[{"id":"R776","pred":"themeOf","subj":"T1343","obj":"T1344"},{"id":"R777","pred":"themeOf","subj":"T1344","obj":"T1345"}],"text":"IL-1Ra expression was reduced in prostate [14], breast [15], and skin cancer [16]."}

    testone

    {"project":"testone","denotations":[{"id":"T1259","span":{"begin":22,"end":29},"obj":"Negative_regulation"},{"id":"T1258","span":{"begin":7,"end":17},"obj":"Gene_expression"},{"id":"T1221","span":{"begin":0,"end":6},"obj":"Protein"}],"relations":[{"id":"R750","pred":"themeOf","subj":"T1221","obj":"T1258"},{"id":"R763","pred":"themeOf","subj":"T1258","obj":"T1259"}],"text":"IL-1Ra expression was reduced in prostate [14], breast [15], and skin cancer [16]."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T2914","span":{"begin":0,"end":6},"obj":"Protein"},{"id":"T2953","span":{"begin":7,"end":17},"obj":"Gene_expression"},{"id":"T2952","span":{"begin":22,"end":29},"obj":"Negative_regulation"}],"relations":[{"id":"R1894","pred":"themeOf","subj":"T2914","obj":"T2953"},{"id":"R1934","pred":"themeOf","subj":"T2953","obj":"T2952"}],"text":"IL-1Ra expression was reduced in prostate [14], breast [15], and skin cancer [16]."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T4215","span":{"begin":22,"end":29},"obj":"Negative_regulation"},{"id":"T4214","span":{"begin":7,"end":17},"obj":"Gene_expression"},{"id":"T4176","span":{"begin":0,"end":6},"obj":"Protein"}],"relations":[{"id":"R3016","pred":"themeOf","subj":"T4214","obj":"T4215"},{"id":"R2982","pred":"themeOf","subj":"T4176","obj":"T4214"}],"text":"IL-1Ra expression was reduced in prostate [14], breast [15], and skin cancer [16]."}

    2_test

    {"project":"2_test","denotations":[{"id":"22567084-15042672-91707012","span":{"begin":43,"end":45},"obj":"15042672"},{"id":"22567084-12851675-91707013","span":{"begin":56,"end":58},"obj":"12851675"},{"id":"22567084-10326864-91707014","span":{"begin":78,"end":80},"obj":"10326864"}],"text":"IL-1Ra expression was reduced in prostate [14], breast [15], and skin cancer [16]."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T2108","span":{"begin":80,"end":81},"obj":"-RRB-"},{"id":"T2107","span":{"begin":78,"end":80},"obj":"CD"},{"id":"T2106","span":{"begin":77,"end":78},"obj":"-LRB-"},{"id":"T2105","span":{"begin":70,"end":76},"obj":"NN"},{"id":"T2104","span":{"begin":65,"end":69},"obj":"NN"},{"id":"T2103","span":{"begin":61,"end":64},"obj":"CC"},{"id":"T2102","span":{"begin":59,"end":60},"obj":"-COMMA-"},{"id":"T2101","span":{"begin":58,"end":59},"obj":"-RRB-"},{"id":"T2100","span":{"begin":56,"end":58},"obj":"CD"},{"id":"T2099","span":{"begin":55,"end":56},"obj":"-LRB-"},{"id":"T2098","span":{"begin":48,"end":54},"obj":"NN"},{"id":"T2097","span":{"begin":46,"end":47},"obj":"-COMMA-"},{"id":"T2096","span":{"begin":45,"end":46},"obj":"-RRB-"},{"id":"T2095","span":{"begin":43,"end":45},"obj":"CD"},{"id":"T2094","span":{"begin":42,"end":43},"obj":"-LRB-"},{"id":"T2093","span":{"begin":33,"end":41},"obj":"NN"},{"id":"T2092","span":{"begin":30,"end":32},"obj":"IN"},{"id":"T2091","span":{"begin":22,"end":29},"obj":"VB"},{"id":"T2090","span":{"begin":18,"end":21},"obj":"VB"},{"id":"T2089","span":{"begin":7,"end":17},"obj":"NN"},{"id":"T2088","span":{"begin":0,"end":6},"obj":"NN"}],"relations":[{"id":"R1166","pred":"arg1Of","subj":"T2089","obj":"T2088"},{"id":"R1167","pred":"arg1Of","subj":"T2089","obj":"T2090"},{"id":"R1168","pred":"arg2Of","subj":"T2089","obj":"T2091"},{"id":"R1169","pred":"arg2Of","subj":"T2091","obj":"T2090"},{"id":"R1170","pred":"arg1Of","subj":"T2091","obj":"T2092"},{"id":"R1171","pred":"arg1Of","subj":"T2093","obj":"T2094"},{"id":"R1172","pred":"arg1Of","subj":"T2093","obj":"T2097"},{"id":"R1173","pred":"arg2Of","subj":"T2095","obj":"T2094"},{"id":"R1174","pred":"arg3Of","subj":"T2096","obj":"T2094"},{"id":"R1175","pred":"arg1Of","subj":"T2097","obj":"T2103"},{"id":"R1176","pred":"arg2Of","subj":"T2098","obj":"T2097"},{"id":"R1177","pred":"arg1Of","subj":"T2098","obj":"T2099"},{"id":"R1178","pred":"arg2Of","subj":"T2100","obj":"T2099"},{"id":"R1179","pred":"arg3Of","subj":"T2101","obj":"T2099"},{"id":"R1180","pred":"arg2Of","subj":"T2103","obj":"T2092"},{"id":"R1181","pred":"arg1Of","subj":"T2103","obj":"T2102"},{"id":"R1182","pred":"arg2Of","subj":"T2105","obj":"T2103"},{"id":"R1183","pred":"arg1Of","subj":"T2105","obj":"T2104"},{"id":"R1184","pred":"arg1Of","subj":"T2105","obj":"T2106"},{"id":"R1185","pred":"arg2Of","subj":"T2107","obj":"T2106"},{"id":"R1186","pred":"arg3Of","subj":"T2108","obj":"T2106"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"IL-1Ra expression was reduced in prostate [14], breast [15], and skin cancer [16]."}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T1536","span":{"begin":0,"end":6},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"IL-1Ra expression was reduced in prostate [14], breast [15], and skin cancer [16]."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T2735","span":{"begin":0,"end":6},"obj":"http://www.uniprot.org/uniprot/P18510"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"IL-1Ra expression was reduced in prostate [14], breast [15], and skin cancer [16]."}

    UBERON-AE

    {"project":"UBERON-AE","denotations":[{"id":"T1397","span":{"begin":48,"end":54},"obj":"http://purl.obolibrary.org/obo/UBERON_0000310"}],"text":"IL-1Ra expression was reduced in prostate [14], breast [15], and skin cancer [16]."}

    sentences

    {"project":"sentences","denotations":[{"id":"T1415","span":{"begin":0,"end":82},"obj":"Sentence"},{"id":"T24","span":{"begin":0,"end":82},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"IL-1Ra expression was reduced in prostate [14], breast [15], and skin cancer [16]."}

    simple1

    {"project":"simple1","denotations":[{"id":"T1690","span":{"begin":0,"end":6},"obj":"Protein"}],"text":"IL-1Ra expression was reduced in prostate [14], breast [15], and skin cancer [16]."}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T2814","span":{"begin":22,"end":29},"obj":"Negative_regulation"},{"id":"T2813","span":{"begin":7,"end":17},"obj":"Gene_expression"},{"id":"T2774","span":{"begin":0,"end":6},"obj":"Protein"}],"relations":[{"id":"R1825","pred":"themeOf","subj":"T2774","obj":"T2813"},{"id":"R1851","pred":"themeOf","subj":"T2813","obj":"T2814"}],"text":"IL-1Ra expression was reduced in prostate [14], breast [15], and skin cancer [16]."}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T4351","span":{"begin":0,"end":17},"obj":"Gene_expression"},{"id":"T4345","span":{"begin":0,"end":81},"obj":"Negative_regulation"},{"id":"T4235","span":{"begin":0,"end":6},"obj":"Protein"}],"relations":[{"id":"R3036","pred":"themeOf","subj":"T4235","obj":"T4351"},{"id":"R3067","pred":"themeOf","subj":"T4351","obj":"T4345"}],"text":"IL-1Ra expression was reduced in prostate [14], breast [15], and skin cancer [16]."}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T3516","span":{"begin":81,"end":82},"obj":"."},{"id":"T3515","span":{"begin":80,"end":81},"obj":"NNP"},{"id":"T3514","span":{"begin":78,"end":80},"obj":"CD"},{"id":"T3513","span":{"begin":77,"end":78},"obj":"NNP"},{"id":"T3512","span":{"begin":70,"end":76},"obj":"NN"},{"id":"T3511","span":{"begin":65,"end":69},"obj":"NN"},{"id":"T3510","span":{"begin":61,"end":64},"obj":"CC"},{"id":"T3509","span":{"begin":59,"end":60},"obj":","},{"id":"T3508","span":{"begin":58,"end":59},"obj":"NNP"},{"id":"T3507","span":{"begin":56,"end":58},"obj":"CD"},{"id":"T3506","span":{"begin":55,"end":56},"obj":"NNP"},{"id":"T3505","span":{"begin":48,"end":54},"obj":"NN"},{"id":"T3504","span":{"begin":46,"end":47},"obj":","},{"id":"T3503","span":{"begin":45,"end":46},"obj":"NNP"},{"id":"T3502","span":{"begin":43,"end":45},"obj":"CD"},{"id":"T3501","span":{"begin":42,"end":43},"obj":"NNP"},{"id":"T3500","span":{"begin":33,"end":41},"obj":"NN"},{"id":"T3499","span":{"begin":30,"end":32},"obj":"IN"},{"id":"T3498","span":{"begin":22,"end":29},"obj":"VBN"},{"id":"T3497","span":{"begin":18,"end":21},"obj":"VBD"},{"id":"T3496","span":{"begin":7,"end":17},"obj":"NN"},{"id":"T3495","span":{"begin":0,"end":6},"obj":"NN"}],"relations":[{"id":"R2340","pred":"compound","subj":"T3495","obj":"T3496"},{"id":"R2341","pred":"nsubjpass","subj":"T3496","obj":"T3498"},{"id":"R2343","pred":"auxpass","subj":"T3497","obj":"T3498"},{"id":"R2344","pred":"ROOT","subj":"T3498","obj":"T3498"},{"id":"R2345","pred":"prep","subj":"T3499","obj":"T3498"},{"id":"R2347","pred":"pobj","subj":"T3500","obj":"T3499"},{"id":"R2348","pred":"nmod","subj":"T3501","obj":"T3503"},{"id":"R2350","pred":"nummod","subj":"T3502","obj":"T3503"},{"id":"R2351","pred":"npadvmod","subj":"T3503","obj":"T3498"},{"id":"R2352","pred":"punct","subj":"T3504","obj":"T3503"},{"id":"R2353","pred":"compound","subj":"T3505","obj":"T3506"},{"id":"R2356","pred":"conj","subj":"T3506","obj":"T3503"},{"id":"R2358","pred":"nummod","subj":"T3507","obj":"T3508"},{"id":"R2359","pred":"conj","subj":"T3508","obj":"T3506"},{"id":"R2360","pred":"punct","subj":"T3509","obj":"T3508"},{"id":"R2362","pred":"cc","subj":"T3510","obj":"T3508"},{"id":"R2363","pred":"compound","subj":"T3511","obj":"T3512"},{"id":"R2364","pred":"compound","subj":"T3512","obj":"T3513"},{"id":"R2366","pred":"conj","subj":"T3513","obj":"T3508"},{"id":"R2367","pred":"nummod","subj":"T3514","obj":"T3515"},{"id":"R2368","pred":"appos","subj":"T3515","obj":"T3513"},{"id":"R2369","pred":"punct","subj":"T3516","obj":"T3498"}],"text":"IL-1Ra expression was reduced in prostate [14], breast [15], and skin cancer [16]."}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T2991","span":{"begin":22,"end":29},"obj":"Negative_regulation"},{"id":"T2990","span":{"begin":7,"end":17},"obj":"Gene_expression"},{"id":"T2989","span":{"begin":0,"end":6},"obj":"Protein"}],"relations":[{"id":"R1916","pred":"themeOf","subj":"T2989","obj":"T2990"},{"id":"R1918","pred":"themeOf","subj":"T2990","obj":"T2991"}],"text":"IL-1Ra expression was reduced in prostate [14], breast [15], and skin cancer [16]."}