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PMC:3342329 / 346-551 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T92 140-144 Protein denotes CCR5
T91 39-43 Protein denotes CCR5
T90 24-28 Protein denotes CCR5
T67 140-144 Protein denotes CCR5
T66 39-43 Protein denotes CCR5
T65 24-28 Protein denotes CCR5

testone

Id Subject Object Predicate Lexical cue
T31 140-144 Protein denotes CCR5
T30 39-43 Protein denotes CCR5
T29 24-28 Protein denotes CCR5

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T623 140-144 Protein denotes CCR5
T622 39-43 Protein denotes CCR5
T621 24-28 Protein denotes CCR5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T749 140-144 Protein denotes CCR5
T748 39-43 Protein denotes CCR5
T747 24-28 Protein denotes CCR5

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T342 203-205 VB denotes is
T341 200-202 PRP denotes it
T340 194-199 IN denotes since
T339 188-193 NN denotes NF-κB
T338 185-187 IN denotes of
T337 174-184 NN denotes activation
T336 170-173 DT denotes the
T335 157-169 VB denotes investigated
T334 154-156 PRP denotes We
T333 148-152 NN denotes mice
T332 140-147 JJ denotes CCR5+/+
T331 137-139 TO denotes to
T330 128-136 VB denotes compared
T329 123-127 WRB denotes when
T328 118-122 NN denotes rate
T327 109-117 NN denotes survival
T326 99-108 VB denotes increased
T325 95-98 CC denotes and
T324 93-94 -COMMA- denotes ,
T323 87-93 NN denotes weight
T322 81-86 NN denotes tumor
T321 79-80 -COMMA- denotes ,
T320 73-79 NN denotes volume
T319 67-72 NN denotes tumor
T318 59-66 VB denotes reduced
T317 52-58 VB denotes showed
T316 47-51 NN denotes mice
T315 39-46 NN denotes CCR5−/−
T314 33-37 NN denotes mice
T313 31-32 -RRB- denotes )
T312 24-31 NN denotes CCR5+/+
T311 23-24 -LRB- denotes (
T310 18-22 NN denotes type
T309 13-17 JJ denotes wild
T308 9-12 CC denotes and
T307 4-8 NN denotes mice
T306 2-3 -RRB- denotes )
R89 T307 T308 arg1Of mice,and
R91 T310 T309 arg1Of type,wild
R92 T310 T311 arg1Of type,(
R93 T312 T311 arg2Of CCR5+/+,(
R94 T313 T311 arg3Of ),(
R95 T314 T308 arg2Of mice,and
R96 T314 T310 arg1Of mice,type
R97 T316 T315 arg1Of mice,CCR5−/−
R98 T316 T317 arg1Of mice,showed
R99 T316 T330 arg1Of mice,compared
R100 T317 T329 arg1Of showed,when
R101 T320 T318 arg2Of volume,reduced
R102 T320 T319 arg1Of volume,tumor
R103 T320 T321 arg1Of volume,","
R104 T321 T325 arg1Of ",",and
R105 T323 T321 arg2Of weight,","
R106 T323 T322 arg1Of weight,tumor
R107 T325 T317 arg2Of and,showed
R108 T325 T324 arg1Of and,","
R109 T328 T325 arg2Of rate,and
R110 T328 T326 arg2Of rate,increased
R111 T328 T327 arg1Of rate,survival
R112 T330 T329 arg2Of compared,when
R113 T330 T331 arg1Of compared,to
R114 T333 T331 arg2Of mice,to
R115 T333 T332 arg1Of mice,CCR5+/+
R116 T334 T335 arg1Of We,investigated
R117 T335 T340 arg1Of investigated,since
R118 T337 T335 arg2Of activation,investigated
R119 T337 T336 arg1Of activation,the
R120 T337 T338 arg1Of activation,of
R121 T339 T338 arg2Of NF-κB,of
R122 T341 T342 arg1Of it,is
R123 T342 T340 arg2Of is,since

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T173 140-144 Protein denotes CCR5
T172 39-43 Protein denotes CCR5
T171 24-28 Protein denotes CCR5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T539 140-144 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T538 39-43 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T537 24-28 http://www.uniprot.org/uniprot/P51681 denotes CCR5

GO-BP

Id Subject Object Predicate Lexical cue
T192 174-193 http://purl.obolibrary.org/obo/GO_0051092 denotes activation of NF-κB

sentences

Id Subject Object Predicate Lexical cue
T122 39-153 Sentence denotes CCR5−/− mice showed reduced tumor volume, tumor weight, and increased survival rate when compared to CCR5+/+ mice.
T5 39-153 Sentence denotes CCR5−/− mice showed reduced tumor volume, tumor weight, and increased survival rate when compared to CCR5+/+ mice.

simple1

Id Subject Object Predicate Lexical cue
T246 140-144 Protein denotes CCR5
T245 39-43 Protein denotes CCR5
T244 24-28 Protein denotes CCR5

DLUT931

Id Subject Object Predicate Lexical cue
T563 140-144 Protein denotes CCR5
T562 39-43 Protein denotes CCR5
T561 24-28 Protein denotes CCR5

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T802 137-152 Protein denotes to CCR5+/+ mice
T800 4-8 Protein denotes mice
T797 185-193 Protein denotes of NF-κB
T796 4-37 Protein denotes mice and wild type (CCR5+/+) mice
T794 47-51 Protein denotes mice

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T918 203-205 VBZ denotes is
T917 200-202 PRP denotes it
T916 194-199 IN denotes since
T915 188-193 NN denotes NF-κB
T914 185-187 IN denotes of
T913 174-184 NN denotes activation
T912 170-173 DT denotes the
T911 157-169 VBD denotes investigated
T910 154-156 PRP denotes We
T909 152-153 . denotes .
T908 148-152 NNS denotes mice
T907 146-147 NN denotes +
T906 145-146 NN denotes /
T905 144-145 CD denotes +
T904 140-144 CD denotes CCR5
T903 137-139 TO denotes to
T902 128-136 VBN denotes compared
T901 123-127 WRB denotes when
T900 118-122 NN denotes rate
T899 109-117 NN denotes survival
T898 99-108 VBD denotes increased
T897 95-98 CC denotes and
T896 93-94 , denotes ,
T895 87-93 NN denotes weight
T894 81-86 NN denotes tumor
T893 79-80 , denotes ,
T892 73-79 NN denotes volume
T891 67-72 NN denotes tumor
T890 59-66 VBN denotes reduced
T889 52-58 VBD denotes showed
T888 47-51 NNS denotes mice
T887 45-46 NN denotes −
T886 44-45 NN denotes /
T885 43-44 CD denotes −
T884 39-43 CD denotes CCR5
T883 37-38 . denotes .
T882 33-37 NNS denotes mice
T881 31-32 -RRB- denotes )
T880 30-31 NN denotes +
T879 29-30 NN denotes /
T878 28-29 CD denotes +
T877 24-28 CD denotes CCR5
T876 23-24 -LRB- denotes (
T875 18-22 NN denotes type
T874 13-17 JJ denotes wild
T873 9-12 CC denotes and
T872 4-8 NNS denotes mice
T871 2-3 -RRB- denotes )
T870 1-2 NN denotes −
T869 0-1 NN denotes /
R474 T869 T870 compound /,−
R478 T873 T872 cc and,mice
R479 T874 T875 amod wild,type
R480 T875 T872 conj type,mice
R481 T876 T880 punct (,+
R482 T877 T880 nummod CCR5,+
R483 T878 T880 nummod +,+
R484 T879 T880 compound /,+
R485 T880 T875 appos +,type
R486 T881 T880 punct ),+
R487 T882 T875 conj mice,type
R489 T884 T888 nummod CCR5,mice
R490 T885 T888 nummod −,mice
R491 T886 T888 compound /,mice
R492 T887 T888 compound −,mice
R493 T888 T889 nsubj mice,showed
R494 T889 T889 ROOT showed,showed
R495 T890 T892 amod reduced,volume
R496 T891 T892 compound tumor,volume
R497 T892 T889 dobj volume,showed
R498 T893 T892 punct ",",volume
R499 T894 T895 compound tumor,weight
R500 T895 T892 conj weight,volume
R501 T896 T889 punct ",",showed
R502 T897 T889 cc and,showed
R503 T898 T900 amod increased,rate
R504 T899 T900 compound survival,rate
R505 T900 T902 dobj rate,compared
R506 T901 T902 advmod when,compared
R507 T902 T889 conj compared,showed
R508 T903 T902 prep to,compared
R509 T904 T908 nummod CCR5,mice
R510 T905 T908 nummod +,mice
R511 T906 T908 compound /,mice
R512 T907 T908 compound +,mice
R513 T908 T903 pobj mice,to
R514 T909 T889 punct .,showed
R515 T910 T911 nsubj We,investigated
R516 T911 T911 ROOT investigated,investigated
R517 T912 T913 det the,activation
R518 T913 T911 dobj activation,investigated
R519 T914 T913 prep of,activation
R520 T915 T914 pobj NF-κB,of
R521 T916 T918 mark since,is
R522 T917 T918 nsubj it,is
R523 T918 T911 advcl is,investigated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T653 140-144 Protein denotes CCR5
T655 174-184 Positive_regulation denotes activation
T654 188-193 Protein denotes NF-κB
R351 T654 T655 themeOf NF-κB,activation