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PMC:3342329 / 32649-32920 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T15779 267-270 NN denotes min
T15778 264-266 CD denotes 15
T15777 260-263 IN denotes for
T15776 256-259 NN denotes rpm
T15775 250-255 CD denotes 15000
T15774 247-249 IN denotes at
T15773 235-246 VB denotes centrifuged
T15772 230-234 RB denotes then
T15771 226-229 CC denotes and
T15770 224-225 -COMMA- denotes ,
T15769 221-224 NN denotes min
T15768 218-220 CD denotes 10
T15767 214-217 IN denotes for
T15766 210-213 NN denotes ice
T15765 207-209 IN denotes on
T15764 197-206 VB denotes incubated
T15763 195-196 -COMMA- denotes ,
T15762 185-195 RB denotes vigorously
T15761 176-184 VB denotes vortexed
T15760 174-175 -COMMA- denotes ,
T15759 173-174 -RRB- denotes )
T15758 145-173 NN denotes phenylmethylsulfonylfluoride
T15757 142-144 NN denotes mM
T15756 138-141 CD denotes 0.2
T15755 136-137 -COMMA- denotes ,
T15754 122-136 NN denotes dithiothreitol
T15753 119-121 NN denotes mM
T15752 115-118 CD denotes 0.5
T15751 113-114 -COMMA- denotes ,
T15750 110-113 NN denotes KCl
T15749 107-109 NN denotes mM
T15748 104-106 CD denotes 10
T15747 102-103 -COMMA- denotes ,
T15746 97-102 NN denotes MgCl2
T15745 94-96 NN denotes mM
T15744 90-93 CD denotes 1.5
T15743 88-89 -COMMA- denotes ,
T15742 87-88 -RRB- denotes ]
T15741 84-87 CD denotes 7.9
T15740 81-83 NN denotes pH
T15739 80-81 -LRB- denotes [
T15738 74-79 NN denotes HEPES
T15737 71-73 NN denotes mM
T15736 68-70 CD denotes 10
T15735 67-68 -LRB- denotes (
T15734 65-66 NN denotes A
T15733 56-64 NN denotes solution
T15732 53-55 IN denotes of
T15731 50-52 NN denotes µl
T15730 46-49 CD denotes 200
T15729 43-45 IN denotes in
T15728 31-42 VB denotes homogenized
T15727 23-30 RB denotes briefly
T15726 18-22 VB denotes were
T15725 10-17 NN denotes tissues
T15724 4-9 NN denotes tumor
T15723 0-3 DT denotes The
R11150 T15725 T15723 arg1Of tissues,The
R11151 T15725 T15724 arg1Of tissues,tumor
R11152 T15725 T15726 arg1Of tissues,were
R11153 T15725 T15728 arg2Of tissues,homogenized
R11154 T15725 T15761 arg1Of tissues,vortexed
R11155 T15725 T15764 arg1Of tissues,incubated
R11156 T15725 T15773 arg1Of tissues,centrifuged
R11157 T15728 T15726 arg2Of homogenized,were
R11158 T15728 T15727 arg1Of homogenized,briefly
R11159 T15728 T15729 arg1Of homogenized,in
R11160 T15728 T15760 arg1Of homogenized,","
R11161 T15731 T15729 arg2Of µl,in
R11162 T15731 T15730 arg1Of µl,200
R11163 T15731 T15732 arg1Of µl,of
R11164 T15731 T15735 arg1Of µl,(
R11165 T15734 T15732 arg2Of A,of
R11166 T15734 T15733 arg1Of A,solution
R11167 T15736 T15737 arg1Of 10,mM
R11168 T15738 T15736 arg1Of HEPES,10
R11169 T15738 T15739 arg1Of HEPES,[
R11170 T15738 T15743 arg1Of HEPES,","
R11171 T15740 T15739 arg2Of pH,[
R11172 T15740 T15741 arg1Of pH,7.9
R11173 T15742 T15739 arg3Of ],[
R11174 T15743 T15747 arg1Of ",",","
R11175 T15744 T15745 arg1Of 1.5,mM
R11176 T15746 T15743 arg2Of MgCl2,","
R11177 T15746 T15744 arg1Of MgCl2,1.5
R11178 T15747 T15751 arg1Of ",",","
R11179 T15748 T15749 arg1Of 10,mM
R11180 T15750 T15747 arg2Of KCl,","
R11181 T15750 T15748 arg1Of KCl,10
R11182 T15751 T15735 arg2Of ",",(
R11183 T15751 T15755 arg1Of ",",","
R11184 T15752 T15753 arg1Of 0.5,mM
R11185 T15754 T15751 arg2Of dithiothreitol,","
R11186 T15754 T15752 arg1Of dithiothreitol,0.5
R11187 T15756 T15757 arg1Of 0.2,mM
R11188 T15758 T15755 arg2Of phenylmethylsulfonylfluoride,","
R11189 T15758 T15756 arg1Of phenylmethylsulfonylfluoride,0.2
R11190 T15759 T15735 arg3Of ),(
R11191 T15760 T15763 arg1Of ",",","
R11192 T15761 T15760 arg2Of vortexed,","
R11193 T15761 T15762 arg1Of vortexed,vigorously
R11194 T15763 T15771 arg1Of ",",and
R11195 T15764 T15763 arg2Of incubated,","
R11196 T15764 T15765 arg1Of incubated,on
R11197 T15764 T15767 arg1Of incubated,for
R11198 T15766 T15765 arg2Of ice,on
R11199 T15769 T15767 arg2Of min,for
R11200 T15769 T15768 arg1Of min,10
R11201 T15771 T15770 arg1Of and,","
R11202 T15773 T15771 arg2Of centrifuged,and
R11203 T15773 T15772 arg1Of centrifuged,then
R11204 T15773 T15774 arg1Of centrifuged,at
R11205 T15773 T15777 arg1Of centrifuged,for
R11206 T15776 T15774 arg2Of rpm,at
R11207 T15776 T15775 arg1Of rpm,15000
R11208 T15779 T15777 arg2Of min,for
R11209 T15779 T15778 arg1Of min,15

UBERON-AE

Id Subject Object Predicate Lexical cue
T15686 10-17 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues

sentences

Id Subject Object Predicate Lexical cue
T15690 0-271 Sentence denotes The tumor tissues were briefly homogenized in 200 µl of solution A (10 mM HEPES [pH 7.9], 1.5 mM MgCl2, 10 mM KCl, 0.5 mM dithiothreitol, 0.2 mM phenylmethylsulfonylfluoride), vortexed vigorously, incubated on ice for 10 min, and then centrifuged at 15000 rpm for 15 min.
T244 0-271 Sentence denotes The tumor tissues were briefly homogenized in 200 µl of solution A (10 mM HEPES [pH 7.9], 1.5 mM MgCl2, 10 mM KCl, 0.5 mM dithiothreitol, 0.2 mM phenylmethylsulfonylfluoride), vortexed vigorously, incubated on ice for 10 min, and then centrifuged at 15000 rpm for 15 min.

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T16179 176-184 Entity denotes vortexed
T16177 53-64 Entity denotes of solution
T16174 68-88 Entity denotes 10 mM HEPES [pH 7.9]
T16167 115-174 Entity denotes 0.5 mM dithiothreitol, 0.2 mM phenylmethylsulfonylfluoride)
T16165 104-113 Entity denotes 10 mM KCl
T16164 138-173 Entity denotes 0.2 mM phenylmethylsulfonylfluoride
T16163 97-114 Entity denotes MgCl2, 10 mM KCl,
T16159 210-213 Entity denotes ice

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16003 270-271 . denotes .
T16002 267-270 NN denotes min
T16001 264-266 CD denotes 15
T16000 260-263 IN denotes for
T15999 256-259 NN denotes rpm
T15998 250-255 CD denotes 15000
T15997 247-249 IN denotes at
T15996 235-246 VBD denotes centrifuged
T15995 230-234 RB denotes then
T15994 226-229 CC denotes and
T15993 224-225 , denotes ,
T15992 221-224 NN denotes min
T15991 218-220 CD denotes 10
T15990 214-217 IN denotes for
T15989 210-213 NN denotes ice
T15988 207-209 IN denotes on
T15987 197-206 VBN denotes incubated
T15986 195-196 , denotes ,
T15985 185-195 RB denotes vigorously
T15984 176-184 JJ denotes vortexed
T15983 174-175 , denotes ,
T15982 173-174 -RRB- denotes )
T15981 145-173 NN denotes phenylmethylsulfonylfluoride
T15980 142-144 NNP denotes mM
T15979 138-141 CD denotes 0.2
T15978 136-137 , denotes ,
T15977 122-136 NN denotes dithiothreitol
T15976 119-121 NNP denotes mM
T15975 115-118 CD denotes 0.5
T15974 113-114 , denotes ,
T15973 110-113 NNP denotes KCl
T15972 107-109 NNP denotes mM
T15971 104-106 CD denotes 10
T15970 102-103 , denotes ,
T15969 97-102 NNP denotes MgCl2
T15968 94-96 NNP denotes mM
T15967 90-93 CD denotes 1.5
T15966 88-89 , denotes ,
T15965 87-88 NNP denotes ]
T15964 84-87 CD denotes 7.9
T15963 81-83 NNP denotes pH
T15962 80-81 NNP denotes [
T15961 74-79 NNP denotes HEPES
T15960 71-73 NNP denotes mM
T15959 68-70 CD denotes 10
T15958 67-68 -LRB- denotes (
T15957 65-66 DT denotes A
T15956 56-64 NN denotes solution
T15955 53-55 IN denotes of
T15954 50-52 NN denotes µl
T15953 46-49 CD denotes 200
T15952 43-45 IN denotes in
T15951 31-42 VBN denotes homogenized
T15950 23-30 RB denotes briefly
T15949 18-22 VBD denotes were
T15948 10-17 NNS denotes tissues
T15947 4-9 NN denotes tumor
T15946 0-3 DT denotes The
R11380 T15946 T15948 det The,tissues
R11381 T15947 T15948 compound tumor,tissues
R11382 T15948 T15949 nsubj tissues,were
R11383 T15949 T15949 ROOT were,were
R11384 T15950 T15951 advmod briefly,homogenized
R11385 T15951 T15949 acomp homogenized,were
R11386 T15952 T15951 prep in,homogenized
R11387 T15953 T15954 nummod 200,µl
R11388 T15954 T15952 pobj µl,in
R11389 T15955 T15954 prep of,µl
R11390 T15956 T15957 compound solution,A
R11391 T15957 T15987 det A,incubated
R11392 T15958 T15965 punct (,]
R11393 T15959 T15965 nummod 10,]
R11394 T15960 T15963 compound mM,pH
R11395 T15961 T15963 compound HEPES,pH
R11396 T15962 T15963 compound [,pH
R11397 T15963 T15965 nmod pH,]
R11398 T15964 T15965 nummod 7.9,]
R11399 T15965 T15969 nmod ],MgCl2
R11400 T15966 T15969 punct ",",MgCl2
R11401 T15967 T15969 nummod 1.5,MgCl2
R11402 T15968 T15969 compound mM,MgCl2
R11403 T15969 T15987 dep MgCl2,incubated
R11404 T15970 T15969 punct ",",MgCl2
R11405 T15971 T15973 nummod 10,KCl
R11406 T15972 T15973 compound mM,KCl
R11407 T15973 T15969 conj KCl,MgCl2
R11408 T15974 T15973 punct ",",KCl
R11409 T15975 T15977 nummod 0.5,dithiothreitol
R11410 T15976 T15977 compound mM,dithiothreitol
R11411 T15977 T15973 appos dithiothreitol,KCl
R11412 T15978 T15977 punct ",",dithiothreitol
R11413 T15979 T15981 nummod 0.2,phenylmethylsulfonylfluoride
R11414 T15980 T15981 compound mM,phenylmethylsulfonylfluoride
R11415 T15981 T15977 appos phenylmethylsulfonylfluoride,dithiothreitol
R11416 T15982 T15977 punct ),dithiothreitol
R11417 T15983 T15973 punct ",",KCl
R11418 T15984 T15969 conj vortexed,MgCl2
R11419 T15985 T15984 advmod vigorously,vortexed
R11420 T15986 T15984 punct ",",vortexed
R11421 T15987 T15987 ROOT incubated,incubated
R11422 T15988 T15987 prep on,incubated
R11423 T15989 T15988 pobj ice,on
R11424 T15990 T15987 prep for,incubated
R11425 T15991 T15992 nummod 10,min
R11426 T15992 T15990 pobj min,for
R11427 T15993 T15987 punct ",",incubated
R11428 T15994 T15987 cc and,incubated
R11429 T15995 T15996 advmod then,centrifuged
R11430 T15996 T15987 conj centrifuged,incubated
R11431 T15997 T15996 prep at,centrifuged
R11432 T15998 T15999 nummod 15000,rpm
R11433 T15999 T15997 pobj rpm,at
R11434 T16000 T15996 prep for,centrifuged
R11435 T16001 T16002 nummod 15,min
R11436 T16002 T16000 pobj min,for
R11437 T16003 T15987 punct .,incubated