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PMC:3342329 / 233-437 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T91 152-156 Protein denotes CCR5
T90 137-141 Protein denotes CCR5
T89 108-112 Protein denotes CCR5
T88 93-97 Protein denotes CCR5
T87 28-38 Gene_expression denotes expression
T86 22-26 Protein denotes CCR5
T66 152-156 Protein denotes CCR5
T65 137-141 Protein denotes CCR5
T64 108-112 Protein denotes CCR5
T63 93-97 Protein denotes CCR5
T62 22-26 Protein denotes CCR5

testone

Id Subject Object Predicate Lexical cue
T30 152-156 Protein denotes CCR5
T29 137-141 Protein denotes CCR5
T28 108-112 Protein denotes CCR5
T27 93-97 Protein denotes CCR5
T26 22-26 Protein denotes CCR5
T47 28-38 Gene_expression denotes expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T640 28-38 Gene_expression denotes expression
T639 98-106 Negative_regulation denotes knockout
T622 152-156 Protein denotes CCR5
T621 137-141 Protein denotes CCR5
T620 108-112 Protein denotes CCR5
T619 93-97 Protein denotes CCR5
T618 22-26 Protein denotes CCR5
R339 T618 T640 themeOf CCR5,expression
R340 T619 T639 themeOf CCR5,knockout
R341 T620 T639 themeOf CCR5,knockout

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T766 28-38 Gene_expression denotes expression
T765 98-106 Negative_regulation denotes knockout
T748 152-156 Protein denotes CCR5
T747 137-141 Protein denotes CCR5
T746 108-112 Protein denotes CCR5
T745 93-97 Protein denotes CCR5
T744 22-26 Protein denotes CCR5
R408 T744 T766 themeOf CCR5,expression
R409 T745 T765 themeOf CCR5,knockout
R410 T746 T765 themeOf CCR5,knockout

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T301 90-92 IN denotes in
T300 83-89 NN denotes growth
T299 74-82 NN denotes melanoma
T298 65-73 VB denotes compared
T297 62-64 PRP denotes we
T296 60-61 -COMMA- denotes ,
T295 49-60 NN denotes development
T294 43-48 NN denotes tumor
T293 39-42 CC denotes and
T292 28-38 NN denotes expression
T291 26-27 -RRB- denotes )
T290 22-26 NN denotes CCR5
T289 21-22 -LRB- denotes (
T288 19-20 CD denotes 5
T287 14-18 NN denotes type
T286 5-13 NN denotes receptor
T322 194-199 NN denotes tumor
T321 192-193 -COMMA- denotes ,
T320 186-192 NN denotes volume
T319 180-185 NN denotes tumor
T318 172-179 VB denotes reduced
T317 165-171 VB denotes showed
T316 160-164 NN denotes mice
T315 152-159 NN denotes CCR5−/−
T314 146-150 NN denotes mice
T313 144-145 -RRB- denotes )
T312 137-144 NN denotes CCR5+/+
T311 136-137 -LRB- denotes (
T310 131-135 NN denotes type
T309 126-130 JJ denotes wild
T308 122-125 CC denotes and
T307 117-121 NN denotes mice
T306 115-116 -RRB- denotes )
T305 108-115 NN denotes CCR5−/−
T304 107-108 -LRB- denotes (
T303 98-106 NN denotes knockout
T302 93-97 NN denotes CCR5
R65 T290 T289 arg2Of CCR5,(
R66 T291 T289 arg3Of ),(
R69 T292 T286 arg1Of expression,receptor
R70 T292 T287 arg1Of expression,type
R71 T292 T288 arg1Of expression,5
R72 T292 T289 arg1Of expression,(
R73 T292 T293 arg1Of expression,and
R75 T295 T293 arg2Of development,and
R76 T295 T294 arg1Of development,tumor
R78 T297 T298 arg1Of we,compared
R80 T298 T296 arg1Of compared,","
R81 T300 T298 arg2Of growth,compared
R82 T300 T299 arg1Of growth,melanoma
R83 T300 T301 arg1Of growth,in
R84 T303 T302 arg1Of knockout,CCR5
R85 T303 T304 arg1Of knockout,(
R86 T305 T304 arg2Of CCR5−/−,(
R87 T306 T304 arg3Of ),(
R88 T307 T303 arg1Of mice,knockout
R89 T307 T308 arg1Of mice,and
R90 T308 T301 arg2Of and,in
R91 T310 T309 arg1Of type,wild
R92 T310 T311 arg1Of type,(
R93 T312 T311 arg2Of CCR5+/+,(
R94 T313 T311 arg3Of ),(
R95 T314 T308 arg2Of mice,and
R96 T314 T310 arg1Of mice,type
R97 T316 T315 arg1Of mice,CCR5−/−
R98 T316 T317 arg1Of mice,showed
R101 T320 T318 arg2Of volume,reduced
R102 T320 T319 arg1Of volume,tumor
R103 T320 T321 arg1Of volume,","

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T172 152-156 Protein denotes CCR5
T171 137-141 Protein denotes CCR5
T170 108-112 Protein denotes CCR5
T169 93-97 Protein denotes CCR5
T168 22-26 Protein denotes CCR5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T538 152-156 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T537 137-141 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T536 108-112 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T535 93-97 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T534 22-26 http://www.uniprot.org/uniprot/P51681 denotes CCR5

GO-BP

Id Subject Object Predicate Lexical cue
T188 83-89 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T187 49-60 http://purl.obolibrary.org/obo/GO_0032502 denotes development

simple1

Id Subject Object Predicate Lexical cue
T245 152-156 Protein denotes CCR5
T244 137-141 Protein denotes CCR5
T243 108-112 Protein denotes CCR5
T242 93-97 Protein denotes CCR5
T241 22-26 Protein denotes CCR5

DLUT931

Id Subject Object Predicate Lexical cue
T579 98-106 Negative_regulation denotes knockout
T578 28-38 Gene_expression denotes expression
T562 152-156 Protein denotes CCR5
T561 137-141 Protein denotes CCR5
T560 108-112 Protein denotes CCR5
T559 93-97 Protein denotes CCR5
T558 22-26 Protein denotes CCR5
R315 T558 T578 themeOf CCR5,expression
R316 T559 T579 themeOf CCR5,knockout
R317 T560 T579 themeOf CCR5,knockout

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T809 22-26 Protein denotes CCR5
T800 117-121 Protein denotes mice
T796 117-150 Protein denotes mice and wild type (CCR5+/+) mice
T794 160-164 Protein denotes mice
T787 14-27 Protein denotes type 5 (CCR5)
T786 93-97 Protein denotes CCR5

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T894 194-199 NN denotes tumor
T893 192-193 , denotes ,
T892 186-192 NN denotes volume
T891 180-185 NN denotes tumor
T890 172-179 VBN denotes reduced
T889 165-171 VBD denotes showed
T888 160-164 NNS denotes mice
T887 158-159 NN denotes −
T886 157-158 NN denotes /
T885 156-157 CD denotes −
T884 152-156 CD denotes CCR5
T883 150-151 . denotes .
T882 146-150 NNS denotes mice
T881 144-145 -RRB- denotes )
T880 143-144 NN denotes +
T879 142-143 NN denotes /
T878 141-142 CD denotes +
T877 137-141 CD denotes CCR5
T876 136-137 -LRB- denotes (
T875 131-135 NN denotes type
T874 126-130 JJ denotes wild
T873 122-125 CC denotes and
T872 117-121 NNS denotes mice
T871 115-116 -RRB- denotes )
T870 114-115 NN denotes −
T869 113-114 NN denotes /
T868 112-113 CD denotes −
T867 108-112 CD denotes CCR5
T866 107-108 -LRB- denotes (
T865 98-106 NN denotes knockout
T864 93-97 CD denotes CCR5
T863 90-92 IN denotes in
T862 83-89 NN denotes growth
T861 74-82 NN denotes melanoma
T860 65-73 VBD denotes compared
T859 62-64 PRP denotes we
T858 60-61 , denotes ,
T857 49-60 NN denotes development
T856 43-48 NN denotes tumor
T855 39-42 CC denotes and
T854 28-38 NN denotes expression
T853 26-27 -RRB- denotes )
T852 22-26 NNS denotes CCR5
T851 21-22 -LRB- denotes (
T850 19-20 CD denotes 5
T849 14-18 NN denotes type
T848 5-13 NN denotes receptor
R453 T848 T849 compound receptor,type
R455 T850 T849 nummod 5,type
R456 T851 T852 punct (,CCR5
R457 T852 T849 appos CCR5,type
R458 T853 T852 punct ),CCR5
R459 T854 T852 conj expression,CCR5
R460 T855 T854 cc and,expression
R461 T856 T857 compound tumor,development
R462 T857 T854 conj development,expression
R463 T858 T860 punct ",",compared
R464 T859 T860 nsubj we,compared
R465 T860 T860 ROOT compared,compared
R466 T861 T862 compound melanoma,growth
R467 T862 T860 dobj growth,compared
R468 T863 T862 prep in,growth
R469 T864 T865 nummod CCR5,knockout
R470 T865 T863 pobj knockout,in
R471 T866 T865 punct (,knockout
R472 T867 T868 nummod CCR5,−
R473 T868 T870 nummod −,−
R474 T869 T870 compound /,−
R475 T870 T865 appos −,knockout
R476 T871 T865 punct ),knockout
R477 T872 T863 pobj mice,in
R478 T873 T872 cc and,mice
R479 T874 T875 amod wild,type
R480 T875 T872 conj type,mice
R481 T876 T880 punct (,+
R482 T877 T880 nummod CCR5,+
R483 T878 T880 nummod +,+
R484 T879 T880 compound /,+
R485 T880 T875 appos +,type
R486 T881 T880 punct ),+
R487 T882 T875 conj mice,type
R488 T883 T860 punct .,compared
R489 T884 T888 nummod CCR5,mice
R490 T885 T888 nummod −,mice
R491 T886 T888 compound /,mice
R492 T887 T888 compound −,mice
R493 T888 T889 nsubj mice,showed
R494 T889 T889 ROOT showed,showed
R495 T890 T892 amod reduced,volume
R496 T891 T892 compound tumor,volume
R497 T892 T889 dobj volume,showed
R498 T893 T892 punct ",",volume

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T652 28-38 Gene_expression denotes expression
T651 28-38 Gene_expression denotes expression
T650 93-97 Protein denotes CCR5
T649 22-26 Protein denotes CCR5
R350 T649 T652 themeOf CCR5,expression