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PMC:3342329 / 18525-18684 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T7324 146-150 Protein denotes CCR5
T7323 107-110 Protein denotes CD4
T7322 96-100 Protein denotes CD19
T7321 57-61 Protein denotes CCR5
T7303 146-150 Protein denotes CCR5
T7302 107-110 Protein denotes CD4
T7301 96-100 Protein denotes CD19
T7300 57-61 Protein denotes CCR5

testone

Id Subject Object Predicate Lexical cue
T7282 146-150 Protein denotes CCR5
T7281 107-110 Protein denotes CD4
T7280 96-100 Protein denotes CD19
T7279 57-61 Protein denotes CCR5

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T8027 146-150 Protein denotes CCR5
T8026 107-110 Protein denotes CD4
T8025 96-100 Protein denotes CD19
T8024 57-61 Protein denotes CCR5

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T7904 146-150 Protein denotes CCR5
T7903 107-110 Protein denotes CD4
T7902 96-100 Protein denotes CD19
T7901 57-61 Protein denotes CCR5

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7767 154-158 NN denotes mice
T7766 146-153 NN denotes CCR5+/+
T7765 142-145 DT denotes the
T7764 139-141 TO denotes to
T7763 130-138 VB denotes compared
T7762 125-129 WRB denotes when
T7761 120-124 NN denotes CD57
T7760 116-119 CC denotes and
T7759 112-115 NN denotes CD8
T7758 110-111 -COMMA- denotes ,
T7757 107-110 NN denotes CD4
T7756 105-106 -COMMA- denotes ,
T7755 102-105 NN denotes CD3
T7754 100-101 -COMMA- denotes ,
T7753 96-100 NN denotes CD19
T7752 93-95 IN denotes of
T7751 86-92 NN denotes levels
T7750 79-85 JJ denotes higher
T7749 75-78 VB denotes had
T7748 70-74 RB denotes also
T7747 65-69 NN denotes mice
T7746 57-64 NN denotes CCR5−/−
T7745 53-56 DT denotes the
T7744 50-52 IN denotes of
T7743 43-49 NN denotes tissue
T7742 37-42 NN denotes tumor
T7741 33-36 DT denotes the
T7740 21-32 VB denotes infiltrated
T7739 16-20 WDT denotes that
T7738 4-15 NN denotes lymphocytes
T7737 0-3 DT denotes The
R5220 T7738 T7737 arg1Of lymphocytes,The
R5221 T7738 T7739 arg1Of lymphocytes,that
R5222 T7738 T7740 arg1Of lymphocytes,infiltrated
R5223 T7738 T7749 arg1Of lymphocytes,had
R5224 T7743 T7740 arg2Of tissue,infiltrated
R5225 T7743 T7741 arg1Of tissue,the
R5226 T7743 T7742 arg1Of tissue,tumor
R5227 T7743 T7744 arg1Of tissue,of
R5228 T7747 T7744 arg2Of mice,of
R5229 T7747 T7745 arg1Of mice,the
R5230 T7747 T7746 arg1Of mice,CCR5−/−
R5231 T7749 T7748 arg1Of had,also
R5232 T7749 T7762 arg1Of had,when
R5233 T7751 T7749 arg2Of levels,had
R5234 T7751 T7750 arg1Of levels,higher
R5235 T7751 T7752 arg1Of levels,of
R5236 T7753 T7754 arg1Of CD19,","
R5237 T7754 T7756 arg1Of ",",","
R5238 T7755 T7754 arg2Of CD3,","
R5239 T7756 T7758 arg1Of ",",","
R5240 T7757 T7756 arg2Of CD4,","
R5241 T7758 T7760 arg1Of ",",and
R5242 T7759 T7758 arg2Of CD8,","
R5243 T7760 T7752 arg2Of and,of
R5244 T7761 T7760 arg2Of CD57,and
R5245 T7763 T7762 arg2Of compared,when
R5246 T7763 T7764 arg1Of compared,to
R5247 T7767 T7764 arg2Of mice,to
R5248 T7767 T7765 arg1Of mice,the
R5249 T7767 T7766 arg1Of mice,CCR5+/+

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T7391 146-150 Protein denotes CCR5
T7390 107-110 Protein denotes CD4
T7389 96-100 Protein denotes CD19
T7388 57-61 Protein denotes CCR5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T7964 96-100 http://www.uniprot.org/uniprot/P15391 denotes CD19
T7959 107-110 http://www.uniprot.org/uniprot/P01730 denotes CD4
T7956 102-105 http://www.uniprot.org/uniprot/P09693 denotes CD3
T7953 102-105 http://www.uniprot.org/uniprot/P07766 denotes CD3
T7950 102-105 http://www.uniprot.org/uniprot/P04234 denotes CD3
T7947 102-105 http://www.uniprot.org/uniprot/P20963 denotes CD3
T7942 146-150 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T7941 57-61 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T7927 112-115 http://www.uniprot.org/uniprot/P10966 denotes CD8
T7917 112-115 http://www.uniprot.org/uniprot/P01732 denotes CD8

UBERON-AE

Id Subject Object Predicate Lexical cue
T7340 43-49 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue

sentences

Id Subject Object Predicate Lexical cue
T7351 0-159 Sentence denotes The lymphocytes that infiltrated the tumor tissue of the CCR5−/− mice also had higher levels of CD19, CD3, CD4, CD8 and CD57 when compared to the CCR5+/+ mice.
T148 0-159 Sentence denotes The lymphocytes that infiltrated the tumor tissue of the CCR5−/− mice also had higher levels of CD19, CD3, CD4, CD8 and CD57 when compared to the CCR5+/+ mice.

simple1

Id Subject Object Predicate Lexical cue
T7429 146-150 Protein denotes CCR5
T7428 107-110 Protein denotes CD4
T7427 96-100 Protein denotes CD19
T7426 57-61 Protein denotes CCR5

DLUT931

Id Subject Object Predicate Lexical cue
T7981 146-150 Protein denotes CCR5
T7980 107-110 Protein denotes CD4
T7979 96-100 Protein denotes CD19
T7978 57-61 Protein denotes CCR5

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8663 102-106 Protein denotes CD3,
T8660 96-115 Protein denotes CD19, CD3, CD4, CD8
T8656 65-69 Protein denotes mice
T8655 96-111 Protein denotes CD19, CD3, CD4,
T8654 139-158 Protein denotes to the CCR5+/+ mice
T8620 102-110 Protein denotes CD3, CD4
T8619 0-64 Entity denotes The lymphocytes that infiltrated the tumor tissue of the CCR5−/−

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T8495 158-159 . denotes .
T8494 154-158 NNS denotes mice
T8493 152-153 CD denotes +
T8492 151-152 VBD denotes /
T8491 150-151 NNP denotes +
T8490 146-150 NNP denotes CCR5
T8488 139-141 TO denotes to
T8487 130-138 VBN denotes compared
T8486 125-129 WRB denotes when
T8485 120-124 NNP denotes CD57
T8484 116-119 CC denotes and
T8483 112-115 NNP denotes CD8
T8482 110-111 , denotes ,
T8481 107-110 NNP denotes CD4
T8480 105-106 , denotes ,
T8479 102-105 NNP denotes CD3
T8478 100-101 , denotes ,
T8477 96-100 NNP denotes CD19
T8476 93-95 IN denotes of
T8475 86-92 NNS denotes levels
T8474 79-85 JJR denotes higher
T8473 75-78 VBD denotes had
T8472 70-74 RB denotes also
T8471 65-69 NNS denotes mice
T8470 63-64 CD denotes −
T8469 62-63 VBD denotes /
T8468 61-62 NNP denotes −
T8467 57-61 NNP denotes CCR5
T8466 53-56 DT denotes the
T8465 50-52 IN denotes of
T8464 43-49 NN denotes tissue
T8463 37-42 NN denotes tumor
T8462 33-36 DT denotes the
T8461 21-32 VBD denotes infiltrated
T8460 16-20 WDT denotes that
T8459 4-15 NNS denotes lymphocytes
T8458 0-3 DT denotes The
T8489 142-145 DT denotes the
R5723 T8458 T8459 det The,lymphocytes
R5724 T8459 T8469 nsubj lymphocytes,/
R5725 T8460 T8461 nsubj that,infiltrated
R5726 T8461 T8459 relcl infiltrated,lymphocytes
R5727 T8462 T8464 det the,tissue
R5728 T8463 T8464 compound tumor,tissue
R5729 T8464 T8461 dobj tissue,infiltrated
R5730 T8465 T8464 prep of,tissue
R5731 T8466 T8468 det the,−
R5732 T8467 T8468 compound CCR5,−
R5733 T8468 T8465 pobj −,of
R5734 T8469 T8469 ROOT /,/
R5735 T8470 T8471 nummod −,mice
R5736 T8471 T8473 nsubj mice,had
R5737 T8472 T8473 advmod also,had
R5738 T8473 T8469 conj had,/
R5739 T8474 T8475 amod higher,levels
R5740 T8475 T8473 dobj levels,had
R5741 T8476 T8475 prep of,levels
R5742 T8477 T8476 pobj CD19,of
R5743 T8478 T8477 punct ",",CD19
R5744 T8479 T8477 conj CD3,CD19
R5745 T8480 T8479 punct ",",CD3
R5746 T8481 T8479 conj CD4,CD3
R5747 T8482 T8481 punct ",",CD4
R5748 T8483 T8481 conj CD8,CD4
R5749 T8484 T8483 cc and,CD8
R5750 T8485 T8483 conj CD57,CD8
R5751 T8486 T8487 advmod when,compared
R5752 T8487 T8473 advcl compared,had
R5753 T8488 T8487 prep to,compared
R5754 T8489 T8491 det the,+
R5755 T8490 T8491 compound CCR5,+
R5756 T8491 T8492 compound +,/
R5757 T8492 T8488 pobj /,to
R5758 T8493 T8494 nummod +,mice
R5759 T8494 T8492 dobj mice,/
R5760 T8495 T8473 punct .,had

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T8061 86-92 Gene_expression denotes levels
T8060 86-92 Gene_expression denotes levels
T8059 86-92 Gene_expression denotes levels
T8058 86-92 Gene_expression denotes levels
T8057 86-92 Gene_expression denotes levels
T8056 120-124 Protein denotes CD57
T8055 112-115 Protein denotes CD8
T8054 107-110 Protein denotes CD4
T8053 102-105 Protein denotes CD3
T8052 96-100 Protein denotes CD19
R5356 T8052 T8057 themeOf CD19,levels
R5357 T8053 T8058 themeOf CD3,levels
R5358 T8054 T8059 themeOf CD4,levels
R5359 T8055 T8060 themeOf CD8,levels
R5360 T8056 T8061 themeOf CD57,levels