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PMC:3342329 / 144-518 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T92 342-346 Protein denotes CCR5
T91 241-245 Protein denotes CCR5
T90 226-230 Protein denotes CCR5
T89 197-201 Protein denotes CCR5
T88 182-186 Protein denotes CCR5
T87 117-127 Gene_expression denotes expression
T86 111-115 Protein denotes CCR5
T85 80-109 Protein denotes C-C chemokine receptor type 5
T67 342-346 Protein denotes CCR5
T66 241-245 Protein denotes CCR5
T65 226-230 Protein denotes CCR5
T64 197-201 Protein denotes CCR5
T63 182-186 Protein denotes CCR5
T62 111-115 Protein denotes CCR5
T61 80-109 Protein denotes C-C chemokine receptor type 5
R17 T85 T87 themeOf C-C chemokine receptor type 5,expression
R18 T86 T85 equivalentTo CCR5,C-C chemokine receptor type 5

testone

Id Subject Object Predicate Lexical cue
T31 342-346 Protein denotes CCR5
T30 241-245 Protein denotes CCR5
T29 226-230 Protein denotes CCR5
T28 197-201 Protein denotes CCR5
T27 182-186 Protein denotes CCR5
T26 111-115 Protein denotes CCR5
T25 80-109 Protein denotes C-C chemokine receptor type 5
T47 117-127 Gene_expression denotes expression
R3 T25 T47 themeOf C-C chemokine receptor type 5,expression
R4 T26 T25 equivalentTo CCR5,C-C chemokine receptor type 5

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T640 117-127 Gene_expression denotes expression
T639 187-195 Negative_regulation denotes knockout
T623 342-346 Protein denotes CCR5
T622 241-245 Protein denotes CCR5
T621 226-230 Protein denotes CCR5
T620 197-201 Protein denotes CCR5
T619 182-186 Protein denotes CCR5
T618 111-115 Protein denotes CCR5
T617 80-109 Protein denotes C-C chemokine receptor type 5
R338 T617 T640 themeOf C-C chemokine receptor type 5,expression
R339 T618 T640 themeOf CCR5,expression
R340 T619 T639 themeOf CCR5,knockout
R341 T620 T639 themeOf CCR5,knockout

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T766 117-127 Gene_expression denotes expression
T765 187-195 Negative_regulation denotes knockout
T749 342-346 Protein denotes CCR5
T748 241-245 Protein denotes CCR5
T747 226-230 Protein denotes CCR5
T746 197-201 Protein denotes CCR5
T745 182-186 Protein denotes CCR5
T744 111-115 Protein denotes CCR5
T743 80-109 Protein denotes C-C chemokine receptor type 5
R407 T743 T766 themeOf C-C chemokine receptor type 5,expression
R408 T744 T766 themeOf CCR5,expression
R409 T745 T765 themeOf CCR5,knockout
R410 T746 T765 themeOf CCR5,knockout

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T301 179-181 IN denotes in
T300 172-178 NN denotes growth
T299 163-171 NN denotes melanoma
T298 154-162 VB denotes compared
T297 151-153 PRP denotes we
T296 149-150 -COMMA- denotes ,
T295 138-149 NN denotes development
T294 132-137 NN denotes tumor
T293 128-131 CC denotes and
T292 117-127 NN denotes expression
T291 115-116 -RRB- denotes )
T290 111-115 NN denotes CCR5
T289 110-111 -LRB- denotes (
T288 108-109 CD denotes 5
T287 103-107 NN denotes type
T286 94-102 NN denotes receptor
T285 84-93 NN denotes chemokine
T284 80-83 NN denotes C-C
T283 77-79 IN denotes of
T282 67-76 NN denotes relevance
T281 63-66 DT denotes the
T280 54-62 VB denotes evaluate
T279 51-53 TO denotes To
T335 359-371 VB denotes investigated
T334 356-358 PRP denotes We
T333 350-354 NN denotes mice
T332 342-349 JJ denotes CCR5+/+
T331 339-341 TO denotes to
T330 330-338 VB denotes compared
T329 325-329 WRB denotes when
T328 320-324 NN denotes rate
T327 311-319 NN denotes survival
T326 301-310 VB denotes increased
T325 297-300 CC denotes and
T324 295-296 -COMMA- denotes ,
T323 289-295 NN denotes weight
T322 283-288 NN denotes tumor
T321 281-282 -COMMA- denotes ,
T320 275-281 NN denotes volume
T319 269-274 NN denotes tumor
T318 261-268 VB denotes reduced
T317 254-260 VB denotes showed
T316 249-253 NN denotes mice
T315 241-248 NN denotes CCR5−/−
T314 235-239 NN denotes mice
T313 233-234 -RRB- denotes )
T312 226-233 NN denotes CCR5+/+
T311 225-226 -LRB- denotes (
T310 220-224 NN denotes type
T309 215-219 JJ denotes wild
T308 211-214 CC denotes and
T307 206-210 NN denotes mice
T306 204-205 -RRB- denotes )
T305 197-204 NN denotes CCR5−/−
T304 196-197 -LRB- denotes (
T303 187-195 NN denotes knockout
T302 182-186 NN denotes CCR5
R61 T280 T279 arg1Of evaluate,To
R62 T282 T280 arg2Of relevance,evaluate
R63 T282 T281 arg1Of relevance,the
R64 T282 T283 arg1Of relevance,of
R65 T290 T289 arg2Of CCR5,(
R66 T291 T289 arg3Of ),(
R67 T292 T284 arg1Of expression,C-C
R68 T292 T285 arg1Of expression,chemokine
R69 T292 T286 arg1Of expression,receptor
R70 T292 T287 arg1Of expression,type
R71 T292 T288 arg1Of expression,5
R72 T292 T289 arg1Of expression,(
R73 T292 T293 arg1Of expression,and
R74 T293 T283 arg2Of and,of
R75 T295 T293 arg2Of development,and
R76 T295 T294 arg1Of development,tumor
R77 T297 T280 arg1Of we,evaluate
R78 T297 T298 arg1Of we,compared
R79 T298 T279 modOf compared,To
R80 T298 T296 arg1Of compared,","
R81 T300 T298 arg2Of growth,compared
R82 T300 T299 arg1Of growth,melanoma
R83 T300 T301 arg1Of growth,in
R84 T303 T302 arg1Of knockout,CCR5
R85 T303 T304 arg1Of knockout,(
R86 T305 T304 arg2Of CCR5−/−,(
R87 T306 T304 arg3Of ),(
R88 T307 T303 arg1Of mice,knockout
R89 T307 T308 arg1Of mice,and
R90 T308 T301 arg2Of and,in
R91 T310 T309 arg1Of type,wild
R92 T310 T311 arg1Of type,(
R93 T312 T311 arg2Of CCR5+/+,(
R94 T313 T311 arg3Of ),(
R95 T314 T308 arg2Of mice,and
R96 T314 T310 arg1Of mice,type
R97 T316 T315 arg1Of mice,CCR5−/−
R98 T316 T317 arg1Of mice,showed
R99 T316 T330 arg1Of mice,compared
R100 T317 T329 arg1Of showed,when
R101 T320 T318 arg2Of volume,reduced
R102 T320 T319 arg1Of volume,tumor
R103 T320 T321 arg1Of volume,","
R104 T321 T325 arg1Of ",",and
R105 T323 T321 arg2Of weight,","
R106 T323 T322 arg1Of weight,tumor
R107 T325 T317 arg2Of and,showed
R108 T325 T324 arg1Of and,","
R109 T328 T325 arg2Of rate,and
R110 T328 T326 arg2Of rate,increased
R111 T328 T327 arg1Of rate,survival
R112 T330 T329 arg2Of compared,when
R113 T330 T331 arg1Of compared,to
R114 T333 T331 arg2Of mice,to
R115 T333 T332 arg1Of mice,CCR5+/+
R116 T334 T335 arg1Of We,investigated

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T173 342-346 Protein denotes CCR5
T172 241-245 Protein denotes CCR5
T171 226-230 Protein denotes CCR5
T170 197-201 Protein denotes CCR5
T169 182-186 Protein denotes CCR5
T168 111-115 Protein denotes CCR5
T167 80-109 Protein denotes C-C chemokine receptor type 5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T539 342-346 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T538 241-245 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T537 226-230 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T536 197-201 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T535 182-186 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T534 111-115 http://www.uniprot.org/uniprot/P51681 denotes CCR5

GO-BP

Id Subject Object Predicate Lexical cue
T188 172-178 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T187 138-149 http://purl.obolibrary.org/obo/GO_0032502 denotes development

sentences

Id Subject Object Predicate Lexical cue
T122 241-355 Sentence denotes CCR5−/− mice showed reduced tumor volume, tumor weight, and increased survival rate when compared to CCR5+/+ mice.
T121 51-240 Sentence denotes To evaluate the relevance of C-C chemokine receptor type 5 (CCR5) expression and tumor development, we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice.
T3 42-50 Sentence denotes Abstract
T4 51-240 Sentence denotes To evaluate the relevance of C-C chemokine receptor type 5 (CCR5) expression and tumor development, we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice.
T5 241-355 Sentence denotes CCR5−/− mice showed reduced tumor volume, tumor weight, and increased survival rate when compared to CCR5+/+ mice.

simple1

Id Subject Object Predicate Lexical cue
T246 342-346 Protein denotes CCR5
T245 241-245 Protein denotes CCR5
T244 226-230 Protein denotes CCR5
T243 197-201 Protein denotes CCR5
T242 182-186 Protein denotes CCR5
T241 111-115 Protein denotes CCR5
T240 80-109 Protein denotes C-C chemokine receptor type 5

DLUT931

Id Subject Object Predicate Lexical cue
T579 187-195 Negative_regulation denotes knockout
T578 117-127 Gene_expression denotes expression
T563 342-346 Protein denotes CCR5
T562 241-245 Protein denotes CCR5
T561 226-230 Protein denotes CCR5
T560 197-201 Protein denotes CCR5
T559 182-186 Protein denotes CCR5
T558 111-115 Protein denotes CCR5
T557 80-109 Protein denotes C-C chemokine receptor type 5
R314 T557 T578 themeOf C-C chemokine receptor type 5,expression
R315 T558 T578 themeOf CCR5,expression
R316 T559 T579 themeOf CCR5,knockout
R317 T560 T579 themeOf CCR5,knockout

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T809 111-115 Protein denotes CCR5
T802 339-354 Protein denotes to CCR5+/+ mice
T800 206-210 Protein denotes mice
T796 206-239 Protein denotes mice and wild type (CCR5+/+) mice
T794 249-253 Protein denotes mice
T790 84-93 Protein denotes chemokine
T787 103-116 Protein denotes type 5 (CCR5)
T786 182-186 Protein denotes CCR5
T773 80-127 Protein denotes C-C chemokine receptor type 5 (CCR5) expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T911 359-371 VBD denotes investigated
T910 356-358 PRP denotes We
T909 354-355 . denotes .
T908 350-354 NNS denotes mice
T907 348-349 NN denotes +
T906 347-348 NN denotes /
T905 346-347 CD denotes +
T904 342-346 CD denotes CCR5
T903 339-341 TO denotes to
T902 330-338 VBN denotes compared
T901 325-329 WRB denotes when
T900 320-324 NN denotes rate
T899 311-319 NN denotes survival
T898 301-310 VBD denotes increased
T897 297-300 CC denotes and
T896 295-296 , denotes ,
T895 289-295 NN denotes weight
T894 283-288 NN denotes tumor
T893 281-282 , denotes ,
T892 275-281 NN denotes volume
T891 269-274 NN denotes tumor
T890 261-268 VBN denotes reduced
T889 254-260 VBD denotes showed
T888 249-253 NNS denotes mice
T887 247-248 NN denotes −
T886 246-247 NN denotes /
T885 245-246 CD denotes −
T884 241-245 CD denotes CCR5
T883 239-240 . denotes .
T882 235-239 NNS denotes mice
T881 233-234 -RRB- denotes )
T880 232-233 NN denotes +
T879 231-232 NN denotes /
T878 230-231 CD denotes +
T877 226-230 CD denotes CCR5
T876 225-226 -LRB- denotes (
T875 220-224 NN denotes type
T874 215-219 JJ denotes wild
T873 211-214 CC denotes and
T872 206-210 NNS denotes mice
T871 204-205 -RRB- denotes )
T870 203-204 NN denotes −
T869 202-203 NN denotes /
T868 201-202 CD denotes −
T867 197-201 CD denotes CCR5
T866 196-197 -LRB- denotes (
T865 187-195 NN denotes knockout
T864 182-186 CD denotes CCR5
T863 179-181 IN denotes in
T862 172-178 NN denotes growth
T861 163-171 NN denotes melanoma
T860 154-162 VBD denotes compared
T859 151-153 PRP denotes we
T858 149-150 , denotes ,
T857 138-149 NN denotes development
T856 132-137 NN denotes tumor
T855 128-131 CC denotes and
T854 117-127 NN denotes expression
T853 115-116 -RRB- denotes )
T852 111-115 NNS denotes CCR5
T851 110-111 -LRB- denotes (
T843 63-66 DT denotes the
T842 54-62 VB denotes evaluate
T841 51-53 TO denotes To
T850 108-109 CD denotes 5
T849 103-107 NN denotes type
T848 94-102 NN denotes receptor
T847 84-93 NN denotes chemokine
T846 80-83 NNP denotes C-C
T845 77-79 IN denotes of
T844 67-76 NN denotes relevance
R446 T841 T842 aux To,evaluate
R448 T843 T844 det the,relevance
R449 T844 T842 dobj relevance,evaluate
R450 T845 T844 prep of,relevance
R451 T846 T849 compound C-C,type
R452 T847 T848 compound chemokine,receptor
R453 T848 T849 compound receptor,type
R454 T849 T845 pobj type,of
R455 T850 T849 nummod 5,type
R456 T851 T852 punct (,CCR5
R457 T852 T849 appos CCR5,type
R458 T853 T852 punct ),CCR5
R459 T854 T852 conj expression,CCR5
R460 T855 T854 cc and,expression
R461 T856 T857 compound tumor,development
R462 T857 T854 conj development,expression
R463 T858 T860 punct ",",compared
R464 T859 T860 nsubj we,compared
R465 T860 T860 ROOT compared,compared
R466 T861 T862 compound melanoma,growth
R467 T862 T860 dobj growth,compared
R468 T863 T862 prep in,growth
R469 T864 T865 nummod CCR5,knockout
R470 T865 T863 pobj knockout,in
R471 T866 T865 punct (,knockout
R472 T867 T868 nummod CCR5,−
R473 T868 T870 nummod −,−
R474 T869 T870 compound /,−
R475 T870 T865 appos −,knockout
R476 T871 T865 punct ),knockout
R477 T872 T863 pobj mice,in
R478 T873 T872 cc and,mice
R479 T874 T875 amod wild,type
R480 T875 T872 conj type,mice
R481 T876 T880 punct (,+
R482 T877 T880 nummod CCR5,+
R483 T878 T880 nummod +,+
R484 T879 T880 compound /,+
R485 T880 T875 appos +,type
R486 T881 T880 punct ),+
R487 T882 T875 conj mice,type
R488 T883 T860 punct .,compared
R489 T884 T888 nummod CCR5,mice
R490 T885 T888 nummod −,mice
R491 T886 T888 compound /,mice
R492 T887 T888 compound −,mice
R493 T888 T889 nsubj mice,showed
R494 T889 T889 ROOT showed,showed
R495 T890 T892 amod reduced,volume
R496 T891 T892 compound tumor,volume
R497 T892 T889 dobj volume,showed
R498 T893 T892 punct ",",volume
R499 T894 T895 compound tumor,weight
R500 T895 T892 conj weight,volume
R501 T896 T889 punct ",",showed
R502 T897 T889 cc and,showed
R503 T898 T900 amod increased,rate
R504 T899 T900 compound survival,rate
R505 T900 T902 dobj rate,compared
R506 T901 T902 advmod when,compared
R507 T902 T889 conj compared,showed
R508 T903 T902 prep to,compared
R509 T904 T908 nummod CCR5,mice
R510 T905 T908 nummod +,mice
R511 T906 T908 compound /,mice
R512 T907 T908 compound +,mice
R513 T908 T903 pobj mice,to
R514 T909 T889 punct .,showed
R515 T910 T911 nsubj We,investigated
R516 T911 T911 ROOT investigated,investigated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T653 342-346 Protein denotes CCR5
T652 117-127 Gene_expression denotes expression
T651 117-127 Gene_expression denotes expression
T650 182-186 Protein denotes CCR5
T649 111-115 Protein denotes CCR5
T648 80-109 Protein denotes C-C chemokine receptor type 5
R349 T648 T651 themeOf C-C chemokine receptor type 5,expression
R350 T649 T652 themeOf CCR5,expression