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PMC:3342329 / 127-398 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T91 258-262 Protein denotes CCR5
T90 243-247 Protein denotes CCR5
T89 214-218 Protein denotes CCR5
T88 199-203 Protein denotes CCR5
T87 134-144 Gene_expression denotes expression
T86 128-132 Protein denotes CCR5
T85 97-126 Protein denotes C-C chemokine receptor type 5
T66 258-262 Protein denotes CCR5
T65 243-247 Protein denotes CCR5
T64 214-218 Protein denotes CCR5
T63 199-203 Protein denotes CCR5
T62 128-132 Protein denotes CCR5
T61 97-126 Protein denotes C-C chemokine receptor type 5
R17 T85 T87 themeOf C-C chemokine receptor type 5,expression
R18 T86 T85 equivalentTo CCR5,C-C chemokine receptor type 5

testone

Id Subject Object Predicate Lexical cue
T30 258-262 Protein denotes CCR5
T29 243-247 Protein denotes CCR5
T28 214-218 Protein denotes CCR5
T27 199-203 Protein denotes CCR5
T26 128-132 Protein denotes CCR5
T25 97-126 Protein denotes C-C chemokine receptor type 5
T47 134-144 Gene_expression denotes expression
R3 T25 T47 themeOf C-C chemokine receptor type 5,expression
R4 T26 T25 equivalentTo CCR5,C-C chemokine receptor type 5

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T640 134-144 Gene_expression denotes expression
T639 204-212 Negative_regulation denotes knockout
T622 258-262 Protein denotes CCR5
T621 243-247 Protein denotes CCR5
T620 214-218 Protein denotes CCR5
T619 199-203 Protein denotes CCR5
T618 128-132 Protein denotes CCR5
T617 97-126 Protein denotes C-C chemokine receptor type 5
R338 T617 T640 themeOf C-C chemokine receptor type 5,expression
R339 T618 T640 themeOf CCR5,expression
R340 T619 T639 themeOf CCR5,knockout
R341 T620 T639 themeOf CCR5,knockout

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T766 134-144 Gene_expression denotes expression
T765 204-212 Negative_regulation denotes knockout
T748 258-262 Protein denotes CCR5
T747 243-247 Protein denotes CCR5
T746 214-218 Protein denotes CCR5
T745 199-203 Protein denotes CCR5
T744 128-132 Protein denotes CCR5
T743 97-126 Protein denotes C-C chemokine receptor type 5
R407 T743 T766 themeOf C-C chemokine receptor type 5,expression
R408 T744 T766 themeOf CCR5,expression
R409 T745 T765 themeOf CCR5,knockout
R410 T746 T765 themeOf CCR5,knockout

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T301 196-198 IN denotes in
T300 189-195 NN denotes growth
T299 180-188 NN denotes melanoma
T298 171-179 VB denotes compared
T297 168-170 PRP denotes we
T296 166-167 -COMMA- denotes ,
T295 155-166 NN denotes development
T294 149-154 NN denotes tumor
T293 145-148 CC denotes and
T292 134-144 NN denotes expression
T291 132-133 -RRB- denotes )
T290 128-132 NN denotes CCR5
T289 127-128 -LRB- denotes (
T288 125-126 CD denotes 5
T287 120-124 NN denotes type
T286 111-119 NN denotes receptor
T285 101-110 NN denotes chemokine
T284 97-100 NN denotes C-C
T283 94-96 IN denotes of
T282 84-93 NN denotes relevance
T281 80-83 DT denotes the
T280 71-79 VB denotes evaluate
T279 68-70 TO denotes To
T316 266-270 NN denotes mice
T315 258-265 NN denotes CCR5−/−
T314 252-256 NN denotes mice
T313 250-251 -RRB- denotes )
T312 243-250 NN denotes CCR5+/+
T311 242-243 -LRB- denotes (
T310 237-241 NN denotes type
T309 232-236 JJ denotes wild
T308 228-231 CC denotes and
T307 223-227 NN denotes mice
T306 221-222 -RRB- denotes )
T305 214-221 NN denotes CCR5−/−
T304 213-214 -LRB- denotes (
T303 204-212 NN denotes knockout
T302 199-203 NN denotes CCR5
R61 T280 T279 arg1Of evaluate,To
R62 T282 T280 arg2Of relevance,evaluate
R63 T282 T281 arg1Of relevance,the
R64 T282 T283 arg1Of relevance,of
R65 T290 T289 arg2Of CCR5,(
R66 T291 T289 arg3Of ),(
R67 T292 T284 arg1Of expression,C-C
R68 T292 T285 arg1Of expression,chemokine
R69 T292 T286 arg1Of expression,receptor
R70 T292 T287 arg1Of expression,type
R71 T292 T288 arg1Of expression,5
R72 T292 T289 arg1Of expression,(
R73 T292 T293 arg1Of expression,and
R74 T293 T283 arg2Of and,of
R75 T295 T293 arg2Of development,and
R76 T295 T294 arg1Of development,tumor
R77 T297 T280 arg1Of we,evaluate
R78 T297 T298 arg1Of we,compared
R79 T298 T279 modOf compared,To
R80 T298 T296 arg1Of compared,","
R81 T300 T298 arg2Of growth,compared
R82 T300 T299 arg1Of growth,melanoma
R83 T300 T301 arg1Of growth,in
R84 T303 T302 arg1Of knockout,CCR5
R85 T303 T304 arg1Of knockout,(
R86 T305 T304 arg2Of CCR5−/−,(
R87 T306 T304 arg3Of ),(
R88 T307 T303 arg1Of mice,knockout
R89 T307 T308 arg1Of mice,and
R90 T308 T301 arg2Of and,in
R91 T310 T309 arg1Of type,wild
R92 T310 T311 arg1Of type,(
R93 T312 T311 arg2Of CCR5+/+,(
R94 T313 T311 arg3Of ),(
R95 T314 T308 arg2Of mice,and
R96 T314 T310 arg1Of mice,type
R97 T316 T315 arg1Of mice,CCR5−/−

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T172 258-262 Protein denotes CCR5
T171 243-247 Protein denotes CCR5
T170 214-218 Protein denotes CCR5
T169 199-203 Protein denotes CCR5
T168 128-132 Protein denotes CCR5
T167 97-126 Protein denotes C-C chemokine receptor type 5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T538 258-262 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T537 243-247 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T536 214-218 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T535 199-203 http://www.uniprot.org/uniprot/P51681 denotes CCR5
T534 128-132 http://www.uniprot.org/uniprot/P51681 denotes CCR5

GO-BP

Id Subject Object Predicate Lexical cue
T188 189-195 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T187 155-166 http://purl.obolibrary.org/obo/GO_0032502 denotes development

sentences

Id Subject Object Predicate Lexical cue
T121 68-257 Sentence denotes To evaluate the relevance of C-C chemokine receptor type 5 (CCR5) expression and tumor development, we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice.
T2 12-57 Sentence denotes Deficiency of CCR5 Prevents Tumor Development
T3 59-67 Sentence denotes Abstract
T4 68-257 Sentence denotes To evaluate the relevance of C-C chemokine receptor type 5 (CCR5) expression and tumor development, we compared melanoma growth in CCR5 knockout (CCR5−/−) mice and wild type (CCR5+/+) mice.

simple1

Id Subject Object Predicate Lexical cue
T245 258-262 Protein denotes CCR5
T244 243-247 Protein denotes CCR5
T243 214-218 Protein denotes CCR5
T242 199-203 Protein denotes CCR5
T241 128-132 Protein denotes CCR5
T240 97-126 Protein denotes C-C chemokine receptor type 5

DLUT931

Id Subject Object Predicate Lexical cue
T579 204-212 Negative_regulation denotes knockout
T578 134-144 Gene_expression denotes expression
T562 258-262 Protein denotes CCR5
T561 243-247 Protein denotes CCR5
T560 214-218 Protein denotes CCR5
T559 199-203 Protein denotes CCR5
T558 128-132 Protein denotes CCR5
T557 97-126 Protein denotes C-C chemokine receptor type 5
R314 T557 T578 themeOf C-C chemokine receptor type 5,expression
R315 T558 T578 themeOf CCR5,expression
R316 T559 T579 themeOf CCR5,knockout
R317 T560 T579 themeOf CCR5,knockout

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T809 128-132 Protein denotes CCR5
T800 223-227 Protein denotes mice
T796 223-256 Protein denotes mice and wild type (CCR5+/+) mice
T794 266-270 Protein denotes mice
T790 101-110 Protein denotes chemokine
T787 120-133 Protein denotes type 5 (CCR5)
T786 199-203 Protein denotes CCR5
T773 97-144 Protein denotes C-C chemokine receptor type 5 (CCR5) expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T840 6-11 NNP denotes Model
T888 266-270 NNS denotes mice
T887 264-265 NN denotes −
T886 263-264 NN denotes /
T885 262-263 CD denotes −
T884 258-262 CD denotes CCR5
T883 256-257 . denotes .
T882 252-256 NNS denotes mice
T881 250-251 -RRB- denotes )
T880 249-250 NN denotes +
T879 248-249 NN denotes /
T878 247-248 CD denotes +
T877 243-247 CD denotes CCR5
T876 242-243 -LRB- denotes (
T875 237-241 NN denotes type
T874 232-236 JJ denotes wild
T873 228-231 CC denotes and
T872 223-227 NNS denotes mice
T871 221-222 -RRB- denotes )
T870 220-221 NN denotes −
T869 219-220 NN denotes /
T868 218-219 CD denotes −
T867 214-218 CD denotes CCR5
T866 213-214 -LRB- denotes (
T865 204-212 NN denotes knockout
T864 199-203 CD denotes CCR5
T863 196-198 IN denotes in
T862 189-195 NN denotes growth
T861 180-188 NN denotes melanoma
T860 171-179 VBD denotes compared
T859 168-170 PRP denotes we
T858 166-167 , denotes ,
T857 155-166 NN denotes development
T856 149-154 NN denotes tumor
T855 145-148 CC denotes and
T854 134-144 NN denotes expression
T853 132-133 -RRB- denotes )
T852 128-132 NNS denotes CCR5
T851 127-128 -LRB- denotes (
T843 80-83 DT denotes the
T842 71-79 VB denotes evaluate
T841 68-70 TO denotes To
T850 125-126 CD denotes 5
T849 120-124 NN denotes type
T848 111-119 NN denotes receptor
T847 101-110 NN denotes chemokine
T846 97-100 NNP denotes C-C
T845 94-96 IN denotes of
T844 84-93 NN denotes relevance
R445 T840 T842 nsubj Model,evaluate
R446 T841 T842 aux To,evaluate
R448 T843 T844 det the,relevance
R449 T844 T842 dobj relevance,evaluate
R450 T845 T844 prep of,relevance
R451 T846 T849 compound C-C,type
R452 T847 T848 compound chemokine,receptor
R453 T848 T849 compound receptor,type
R454 T849 T845 pobj type,of
R455 T850 T849 nummod 5,type
R456 T851 T852 punct (,CCR5
R457 T852 T849 appos CCR5,type
R458 T853 T852 punct ),CCR5
R459 T854 T852 conj expression,CCR5
R460 T855 T854 cc and,expression
R461 T856 T857 compound tumor,development
R462 T857 T854 conj development,expression
R463 T858 T860 punct ",",compared
R464 T859 T860 nsubj we,compared
R465 T860 T860 ROOT compared,compared
R466 T861 T862 compound melanoma,growth
R467 T862 T860 dobj growth,compared
R468 T863 T862 prep in,growth
R469 T864 T865 nummod CCR5,knockout
R470 T865 T863 pobj knockout,in
R471 T866 T865 punct (,knockout
R472 T867 T868 nummod CCR5,−
R473 T868 T870 nummod −,−
R474 T869 T870 compound /,−
R475 T870 T865 appos −,knockout
R476 T871 T865 punct ),knockout
R477 T872 T863 pobj mice,in
R478 T873 T872 cc and,mice
R479 T874 T875 amod wild,type
R480 T875 T872 conj type,mice
R481 T876 T880 punct (,+
R482 T877 T880 nummod CCR5,+
R483 T878 T880 nummod +,+
R484 T879 T880 compound /,+
R485 T880 T875 appos +,type
R486 T881 T880 punct ),+
R487 T882 T875 conj mice,type
R488 T883 T860 punct .,compared
R489 T884 T888 nummod CCR5,mice
R490 T885 T888 nummod −,mice
R491 T886 T888 compound /,mice
R492 T887 T888 compound −,mice

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T652 134-144 Gene_expression denotes expression
T651 134-144 Gene_expression denotes expression
T650 199-203 Protein denotes CCR5
T649 128-132 Protein denotes CCR5
T648 97-126 Protein denotes C-C chemokine receptor type 5
R349 T648 T651 themeOf C-C chemokine receptor type 5,expression
R350 T649 T652 themeOf CCR5,expression