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PMC:3342329 / 10171-10350 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T5410 154-158 Protein denotes CCR5
T5409 88-103 Phosphorylation denotes phosphorylation
T5408 74-84 Negative_regulation denotes inhibition
T5407 54-61 Entity denotes nucleus
T5406 41-44 Protein denotes p65
T5405 31-34 Protein denotes p50
T5404 14-27 Localization denotes translocation
T5398 154-158 Protein denotes CCR5
T5397 41-44 Protein denotes p65
T5396 31-34 Protein denotes p50
R3680 T5405 T5404 themeOf p50,translocation
R3681 T5406 T5404 themeOf p65,translocation
R3682 T5407 T5404 locationOf nucleus,translocation
R3683 T5409 T5408 themeOf phosphorylation,inhibition

testone

Id Subject Object Predicate Lexical cue
T5392 88-103 Phosphorylation denotes phosphorylation
T5391 54-61 Entity denotes nucleus
T5390 14-27 Localization denotes translocation
T5386 154-158 Protein denotes CCR5
T5385 41-44 Protein denotes p65
T5384 31-34 Protein denotes p50
R3677 T5384 T5390 themeOf p50,translocation
R3678 T5385 T5390 themeOf p65,translocation
R3679 T5391 T5390 locationOf nucleus,translocation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T5832 120-129 Negative_regulation denotes prevented
T5831 14-27 Localization denotes translocation
T5827 154-158 Protein denotes CCR5
T5826 41-44 Protein denotes p65
T5825 31-34 Protein denotes p50
R4013 T5825 T5831 themeOf p50,translocation
R4014 T5826 T5831 themeOf p65,translocation
R4016 T5831 T5832 themeOf translocation,prevented
R4017 T5831 T5832 themeOf translocation,prevented

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T5633 14-27 Localization denotes translocation
T5632 88-103 Phosphorylation denotes phosphorylation
T5631 74-84 Negative_regulation denotes inhibition
T5630 120-129 Negative_regulation denotes prevented
T5626 154-158 Protein denotes CCR5
T5625 41-44 Protein denotes p65
T5624 31-34 Protein denotes p50
R3837 T5624 T5632 themeOf p50,phosphorylation
R3838 T5624 T5633 themeOf p50,translocation
R3839 T5625 T5633 themeOf p65,translocation
R3842 T5632 T5631 themeOf phosphorylation,inhibition
R3843 T5633 T5630 themeOf translocation,prevented
R3844 T5633 T5630 themeOf translocation,prevented

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5595 177-178 -RRB- denotes )
T5594 175-177 NN denotes 2B
T5593 168-174 NN denotes Figure
T5592 167-168 -LRB- denotes (
T5591 162-166 NN denotes mice
T5590 154-161 NN denotes CCR5−/−
T5589 151-153 IN denotes of
T5588 143-150 NN denotes tissues
T5587 137-142 NN denotes tumor
T5586 133-136 DT denotes the
T5585 130-132 IN denotes in
T5584 120-129 VB denotes prevented
T5583 115-119 RB denotes also
T5582 111-114 VB denotes was
T5581 107-110 NN denotes IκB
T5580 104-106 IN denotes of
T5579 88-103 NN denotes phosphorylation
T5578 85-87 IN denotes of
T5577 74-84 NN denotes inhibition
T5576 70-73 DT denotes the
T5575 62-69 IN denotes through
T5574 54-61 NN denotes nucleus
T5573 50-53 DT denotes the
T5572 45-49 IN denotes into
T5571 39-44 NN denotes p-p65
T5570 35-38 CC denotes and
T5569 31-34 NN denotes p50
T5568 28-30 IN denotes of
T5567 14-27 NN denotes translocation
T5566 10-13 DT denotes the
T5565 8-9 -COMMA- denotes ,
T5564 0-8 RB denotes Moreover
R3779 T5567 T5566 arg1Of translocation,the
R3780 T5567 T5568 arg1Of translocation,of
R3781 T5567 T5582 arg1Of translocation,was
R3782 T5567 T5584 arg2Of translocation,prevented
R3783 T5569 T5570 arg1Of p50,and
R3784 T5570 T5568 arg2Of and,of
R3785 T5570 T5572 arg1Of and,into
R3786 T5570 T5575 arg1Of and,through
R3787 T5571 T5570 arg2Of p-p65,and
R3788 T5574 T5572 arg2Of nucleus,into
R3789 T5574 T5573 arg1Of nucleus,the
R3790 T5577 T5575 arg2Of inhibition,through
R3791 T5577 T5576 arg1Of inhibition,the
R3792 T5577 T5578 arg1Of inhibition,of
R3793 T5579 T5578 arg2Of phosphorylation,of
R3794 T5579 T5580 arg1Of phosphorylation,of
R3795 T5581 T5580 arg2Of IκB,of
R3796 T5584 T5564 arg1Of prevented,Moreover
R3797 T5584 T5565 arg1Of prevented,","
R3798 T5584 T5582 arg2Of prevented,was
R3799 T5584 T5583 arg1Of prevented,also
R3800 T5584 T5585 arg1Of prevented,in
R3801 T5588 T5585 arg2Of tissues,in
R3802 T5588 T5586 arg1Of tissues,the
R3803 T5588 T5587 arg1Of tissues,tumor
R3804 T5588 T5589 arg1Of tissues,of
R3805 T5591 T5589 arg2Of mice,of
R3806 T5591 T5590 arg1Of mice,CCR5−/−
R3807 T5591 T5592 arg1Of mice,(
R3808 T5594 T5592 arg2Of 2B,(
R3809 T5594 T5593 arg1Of 2B,Figure
R3810 T5595 T5592 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T5448 154-158 Protein denotes CCR5
T5447 41-44 Protein denotes p65
T5446 31-34 Protein denotes p50

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T5798 31-34 http://www.uniprot.org/uniprot/P19838 denotes p50
T5796 154-158 http://www.uniprot.org/uniprot/P51681 denotes CCR5

UBERON-AE

Id Subject Object Predicate Lexical cue
T5416 143-150 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues

GO-BP

Id Subject Object Predicate Lexical cue
T5457 88-110 http://purl.obolibrary.org/obo/GO_0007252 denotes phosphorylation of IκB
T5456 88-103 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T5455 74-110 http://purl.obolibrary.org/obo/GO_1903720 denotes inhibition of phosphorylation of IκB
T5454 74-103 http://purl.obolibrary.org/obo/GO_0042326 denotes inhibition of phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T5460 54-61 http://purl.obolibrary.org/obo/GO_0005634 denotes nucleus

sentences

Id Subject Object Predicate Lexical cue
T5422 0-179 Sentence denotes Moreover, the translocation of p50 and p-p65 into the nucleus through the inhibition of phosphorylation of IκB was also prevented in the tumor tissues of CCR5−/− mice (Figure 2B).
T80 0-179 Sentence denotes Moreover, the translocation of p50 and p-p65 into the nucleus through the inhibition of phosphorylation of IκB was also prevented in the tumor tissues of CCR5−/− mice (Figure 2B).

simple1

Id Subject Object Predicate Lexical cue
T5478 154-158 Protein denotes CCR5
T5477 41-44 Protein denotes p65
T5476 31-34 Protein denotes p50

DLUT931

Id Subject Object Predicate Lexical cue
T5811 120-129 Negative_regulation denotes prevented
T5810 74-84 Negative_regulation denotes inhibition
T5809 14-27 Localization denotes translocation
T5805 154-158 Protein denotes CCR5
T5804 41-44 Protein denotes p65
T5803 31-34 Protein denotes p50
R4003 T5803 T5809 themeOf p50,translocation
R4004 T5804 T5809 themeOf p65,translocation
R4005 T5809 T5810 themeOf translocation,inhibition
R4006 T5809 T5811 themeOf translocation,prevented
R4007 T5809 T5810 themeOf translocation,inhibition
R4008 T5809 T5811 themeOf translocation,prevented

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T5901 10-150 Negative_regulation denotes the translocation of p50 and p-p65 into the nucleus through the inhibition of phosphorylation of IκB was also prevented in the tumor tissues
T5898 31-34 Protein denotes p50
T5894 162-178 Protein denotes mice (Figure 2B)
T5891 50-61 Entity denotes the nucleus
T5889 39-44 Protein denotes p-p65

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T5763 178-179 . denotes .
T5762 177-178 -RRB- denotes )
T5761 175-177 NN denotes 2B
T5760 168-174 NN denotes Figure
T5759 167-168 -LRB- denotes (
T5758 162-166 NNS denotes mice
T5757 160-161 NN denotes −
T5756 159-160 NN denotes /
T5755 158-159 CD denotes −
T5754 154-158 CD denotes CCR5
T5753 151-153 IN denotes of
T5752 143-150 NNS denotes tissues
T5751 137-142 NN denotes tumor
T5750 133-136 DT denotes the
T5749 130-132 IN denotes in
T5748 120-129 VBN denotes prevented
T5747 115-119 RB denotes also
T5746 111-114 VBD denotes was
T5745 107-110 NNP denotes IκB
T5744 104-106 IN denotes of
T5743 88-103 NN denotes phosphorylation
T5742 85-87 IN denotes of
T5741 74-84 NN denotes inhibition
T5740 70-73 DT denotes the
T5739 62-69 IN denotes through
T5738 54-61 NN denotes nucleus
T5737 50-53 DT denotes the
T5736 45-49 IN denotes into
T5735 39-44 CD denotes p-p65
T5734 35-38 CC denotes and
T5733 31-34 CD denotes p50
T5732 28-30 IN denotes of
T5731 14-27 NN denotes translocation
T5730 10-13 DT denotes the
T5729 8-9 , denotes ,
T5728 0-8 RB denotes Moreover
R3937 T5728 T5748 advmod Moreover,prevented
R3938 T5729 T5748 punct ",",prevented
R3939 T5730 T5731 det the,translocation
R3940 T5731 T5748 nsubjpass translocation,prevented
R3941 T5732 T5731 prep of,translocation
R3942 T5733 T5732 pobj p50,of
R3943 T5734 T5733 cc and,p50
R3944 T5735 T5733 conj p-p65,p50
R3945 T5736 T5731 prep into,translocation
R3946 T5737 T5738 det the,nucleus
R3947 T5738 T5736 pobj nucleus,into
R3948 T5739 T5731 prep through,translocation
R3949 T5740 T5741 det the,inhibition
R3950 T5741 T5739 pobj inhibition,through
R3951 T5742 T5741 prep of,inhibition
R3952 T5743 T5742 pobj phosphorylation,of
R3953 T5744 T5743 prep of,phosphorylation
R3954 T5745 T5744 pobj IκB,of
R3955 T5746 T5748 auxpass was,prevented
R3956 T5747 T5748 advmod also,prevented
R3957 T5748 T5748 ROOT prevented,prevented
R3958 T5749 T5748 prep in,prevented
R3959 T5750 T5752 det the,tissues
R3960 T5751 T5752 compound tumor,tissues
R3961 T5752 T5749 pobj tissues,in
R3962 T5753 T5752 prep of,tissues
R3963 T5754 T5758 nummod CCR5,mice
R3964 T5755 T5758 nummod −,mice
R3965 T5756 T5758 nmod /,mice
R3966 T5757 T5758 compound −,mice
R3967 T5758 T5753 pobj mice,of
R3968 T5759 T5761 punct (,2B
R3969 T5760 T5761 compound Figure,2B
R3970 T5761 T5758 appos 2B,mice
R3971 T5762 T5748 punct ),prevented
R3972 T5763 T5748 punct .,prevented

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T5855 120-129 Negative_regulation denotes prevented
T5854 120-129 Negative_regulation denotes prevented
T5853 74-84 Negative_regulation denotes inhibition
T5852 74-84 Negative_regulation denotes inhibition
T5851 74-84 Negative_regulation denotes inhibition
T5850 14-27 Localization denotes translocation
T5849 14-27 Localization denotes translocation
T5848 88-103 Phosphorylation denotes phosphorylation
T5847 54-61 Entity denotes nucleus
T5846 107-110 Protein denotes IκB
T5845 39-44 Protein denotes p-p65
T5844 31-34 Protein denotes p50
R4023 T5844 T5849 themeOf p50,translocation
R4024 T5845 T5850 themeOf p-p65,translocation
R4025 T5846 T5848 themeOf IκB,phosphorylation
R4026 T5847 T5849 locationOf nucleus,translocation
R4027 T5847 T5850 locationOf nucleus,translocation
R4028 T5848 T5853 themeOf phosphorylation,inhibition
R4029 T5849 T5851 themeOf translocation,inhibition
R4030 T5849 T5854 themeOf translocation,prevented
R4031 T5850 T5852 themeOf translocation,inhibition
R4032 T5850 T5855 themeOf translocation,prevented