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PMC:3333881 / 8843-9319 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22187158-17942396-77584440 472-474 17942396 denotes 50

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T6049 0-11 VB denotes Pseudotyped
T6050 12-19 NN denotes virions
T6051 20-23 CC denotes and
T6052 24-30 JJ denotes single
T6053 31-36 NN denotes round
T6054 37-46 NN denotes infection
T6055 47-51 NN denotes 293T
T6056 52-57 NN denotes cells
T6057 58-59 -LRB- denotes (
T6058 59-66 CD denotes 1 × 107
T6059 66-67 -RRB- denotes )
T6060 68-72 VB denotes were
T6061 73-84 VB denotes transfected
T6062 85-89 IN denotes with
T6063 90-105 NN denotes pNL4-3.Luc.R-E-
T6064 106-108 CC denotes or
T6065 109-129 NN denotes pNL4-3.FLAG-Tat.R-E-
T6066 130-131 -LRB- denotes (
T6067 131-136 NN denotes 10 µg
T6068 136-137 -RRB- denotes )
T6069 138-146 RB denotes together
T6070 147-151 IN denotes with
T6071 152-157 NN denotes pHXB2
T6072 158-161 NN denotes Env
T6073 162-163 -LRB- denotes (
T6074 163-168 NN denotes 10 µg
T6075 168-169 -RRB- denotes )
T6076 169-170 -COMMA- denotes ,
T6078 175-179 JJ denotes 48-h
T6079 180-197 JJ denotes post-transfection
T6080 198-202 NN denotes cell
T6081 203-214 NN denotes supernatant
T6082 215-218 VB denotes was
T6083 219-228 VB denotes collected
T6084 230-243 JJ denotes Enzyme-linked
T6085 244-257 JJ denotes immunosorbent
T6086 258-263 NN denotes assay
T6087 264-265 -LRB- denotes (
T6088 265-270 NN denotes ELISA
T6089 270-271 -RRB- denotes )
T6090 272-277 VB denotes using
T6091 278-286 JJ denotes anti-p24
T6092 287-295 NN denotes antibody
T6093 296-304 VB denotes measured
T6094 305-311 NN denotes virion
T6095 312-325 NN denotes concentration
T6096 327-332 NN denotes PBMCs
T6097 332-333 -COMMA- denotes ,
T6098 334-340 NN denotes Jurkat
T6099 341-343 CC denotes or
T6100 344-348 NN denotes U937
T6101 349-354 NN denotes cells
T6102 355-356 -LRB- denotes (
T6103 356-363 CD denotes 5 × 107
T6104 363-364 -RRB- denotes )
T6105 365-369 VB denotes were
T6106 370-378 VB denotes infected
T6107 379-383 IN denotes with
T6108 384-388 NN denotes HXB2
T6109 389-404 JJ denotes Env-pseudotyped
T6110 405-412 NN denotes virions
T6111 413-414 -LRB- denotes (
T6112 414-420 CD denotes 500 ng
T6113 421-423 IN denotes of
T6114 424-427 NN denotes p24
T6115 427-428 -RRB- denotes )
T6116 429-431 IN denotes by
T6117 432-445 NN denotes spinoculation
T6118 445-446 -COMMA- denotes ,
T6119 447-449 IN denotes as
T6120 450-460 RB denotes previously
T6121 461-470 VB denotes described
T6122 471-472 -LRB- denotes (
T6123 472-474 CD denotes 50
T6124 474-475 -RRB- denotes )
T6077 171-174 CC denotes and
R5180 T6050 T6049 arg2Of virions,Pseudotyped
R5181 T6050 T6051 arg1Of virions,and
R5182 T6054 T6051 arg2Of infection,and
R5183 T6054 T6052 arg1Of infection,single
R5184 T6054 T6053 arg1Of infection,round
R5185 T6056 T6055 arg1Of cells,293T
R5186 T6056 T6057 arg1Of cells,(
R5187 T6056 T6060 arg1Of cells,were
R5188 T6056 T6061 arg2Of cells,transfected
R5189 T6058 T6057 arg2Of 1 × 107,(
R5190 T6059 T6057 arg3Of ),(
R5191 T6061 T6060 arg2Of transfected,were
R5192 T6061 T6062 arg1Of transfected,with
R5193 T6061 T6077 arg1Of transfected,and
R5194 T6063 T6064 arg1Of pNL4-3.Luc.R-E-,or
R5195 T6064 T6062 arg2Of or,with
R5196 T6065 T6064 arg2Of pNL4-3.FLAG-Tat.R-E-,or
R5197 T6065 T6066 arg1Of pNL4-3.FLAG-Tat.R-E-,(
R5198 T6065 T6070 arg1Of pNL4-3.FLAG-Tat.R-E-,with
R5199 T6067 T6066 arg2Of 10 µg,(
R5200 T6068 T6066 arg3Of ),(
R5201 T6070 T6069 arg1Of with,together
R5202 T6072 T6070 arg2Of Env,with
R5203 T6072 T6071 arg1Of Env,pHXB2
R5204 T6072 T6073 arg1Of Env,(
R5205 T6074 T6073 arg2Of 10 µg,(
R5206 T6075 T6073 arg3Of ),(
R5207 T6077 T6076 arg1Of and,","
R5208 T6081 T6078 arg1Of supernatant,48-h
R5209 T6081 T6079 arg1Of supernatant,post-transfection
R5210 T6081 T6080 arg1Of supernatant,cell
R5211 T6081 T6082 arg1Of supernatant,was
R5212 T6081 T6083 arg2Of supernatant,collected
R5213 T6083 T6077 arg2Of collected,and
R5214 T6083 T6082 arg2Of collected,was
R5215 T6086 T6084 arg1Of assay,Enzyme-linked
R5216 T6086 T6085 arg1Of assay,immunosorbent
R5217 T6086 T6087 arg1Of assay,(
R5218 T6086 T6090 arg1Of assay,using
R5219 T6088 T6087 arg2Of ELISA,(
R5220 T6089 T6087 arg3Of ),(
R5221 T6095 T6090 arg2Of concentration,using
R5222 T6095 T6091 arg1Of concentration,anti-p24
R5223 T6095 T6092 arg1Of concentration,antibody
R5224 T6095 T6093 arg2Of concentration,measured
R5225 T6095 T6094 arg1Of concentration,virion
R5226 T6096 T6097 arg1Of PBMCs,","
R5227 T6097 T6099 arg1Of ",",or
R5228 T6098 T6097 arg2Of Jurkat,","
R5229 T6099 T6102 arg1Of or,(
R5230 T6099 T6105 arg1Of or,were
R5231 T6099 T6106 arg2Of or,infected
R5232 T6101 T6099 arg2Of cells,or
R5233 T6101 T6100 arg1Of cells,U937
R5234 T6103 T6102 arg2Of 5 × 107,(
R5235 T6104 T6102 arg3Of ),(
R5236 T6106 T6105 arg2Of infected,were
R5237 T6106 T6107 arg1Of infected,with
R5238 T6110 T6107 arg2Of virions,with
R5239 T6110 T6108 arg1Of virions,HXB2
R5240 T6110 T6109 arg1Of virions,Env-pseudotyped
R5241 T6110 T6111 arg1Of virions,(
R5242 T6110 T6116 arg1Of virions,by
R5243 T6110 T6118 arg1Of virions,","
R5244 T6110 T6119 arg1Of virions,as
R5245 T6112 T6111 arg2Of 500 ng,(
R5246 T6112 T6113 arg1Of 500 ng,of
R5247 T6114 T6113 arg2Of p24,of
R5248 T6115 T6111 arg3Of ),(
R5249 T6117 T6116 arg2Of spinoculation,by
R5250 T6121 T6119 arg2Of described,as
R5251 T6121 T6120 arg1Of described,previously
R5252 T6121 T6122 arg1Of described,(
R5253 T6123 T6122 arg2Of 50,(
R5254 T6124 T6122 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6139 0-11 NNP denotes Pseudotyped
T6140 12-19 NNS denotes virions
T6141 20-23 CC denotes and
T6142 24-30 JJ denotes single
T6143 31-36 NN denotes round
T6144 37-46 NN denotes infection
T6145 47-51 JJ denotes 293T
T6146 52-57 NNS denotes cells
T6147 58-59 -LRB- denotes (
T6148 59-60 CD denotes 1
T6149 61-62 CD denotes ×
T6150 63-66 CD denotes 107
T6151 66-67 -RRB- denotes )
T6152 68-72 VBD denotes were
T6153 73-84 VBN denotes transfected
T6154 85-89 IN denotes with
T6155 90-96 JJ denotes pNL4-3
T6156 96-97 . denotes .
T6157 97-104 SYM denotes Luc.R-E
T6158 104-105 : denotes -
T6159 106-108 CC denotes or
T6160 109-115 JJ denotes pNL4-3
T6161 115-116 . denotes .
T6162 116-124 NN denotes FLAG-Tat
T6163 124-125 . denotes .
T6164 125-128 SYM denotes R-E
T6165 128-129 : denotes -
T6166 130-131 -LRB- denotes (
T6167 131-133 CD denotes 10
T6168 134-136 NN denotes µg
T6169 136-137 -RRB- denotes )
T6170 138-146 RB denotes together
T6171 147-151 IN denotes with
T6172 152-157 NNP denotes pHXB2
T6173 158-161 NNP denotes Env
T6174 162-163 -LRB- denotes (
T6175 163-165 CD denotes 10
T6176 166-168 NN denotes µg
T6177 168-169 -RRB- denotes )
T6178 169-170 , denotes ,
T6179 171-174 CC denotes and
T6180 175-179 JJ denotes 48-h
T6181 180-197 JJ denotes post-transfection
T6182 198-202 NN denotes cell
T6183 203-214 NN denotes supernatant
T6184 215-218 VBD denotes was
T6185 219-228 VBN denotes collected
T6186 228-229 . denotes .
T6187 230-243 JJ denotes Enzyme-linked
T6188 244-257 JJ denotes immunosorbent
T6189 258-263 NN denotes assay
T6190 264-265 -LRB- denotes (
T6191 265-270 NNP denotes ELISA
T6192 270-271 -RRB- denotes )
T6193 272-277 VBG denotes using
T6194 278-286 JJ denotes anti-p24
T6195 287-295 NN denotes antibody
T6196 296-304 VBN denotes measured
T6197 305-311 NN denotes virion
T6198 312-325 NN denotes concentration
T6199 325-326 . denotes .
T6200 327-332 NNS denotes PBMCs
T6201 332-333 , denotes ,
T6202 334-340 NNP denotes Jurkat
T6203 341-343 CC denotes or
T6204 344-348 NNP denotes U937
T6205 349-354 NNS denotes cells
T6206 355-356 -LRB- denotes (
T6207 356-357 CD denotes 5
T6208 358-359 RB denotes ×
T6209 360-363 CD denotes 107
T6210 363-364 -RRB- denotes )
T6211 365-369 VBD denotes were
T6212 370-378 VBN denotes infected
T6213 379-383 IN denotes with
T6214 384-388 NNP denotes HXB2
T6215 389-404 JJ denotes Env-pseudotyped
T6216 405-412 NNS denotes virions
T6217 413-414 -LRB- denotes (
T6218 414-417 CD denotes 500
T6219 418-420 NN denotes ng
T6220 421-423 IN denotes of
T6221 424-427 CD denotes p24
T6222 427-428 -RRB- denotes )
T6223 429-431 IN denotes by
T6224 432-445 NN denotes spinoculation
T6225 445-446 , denotes ,
T6226 447-449 IN denotes as
T6227 450-460 RB denotes previously
T6228 461-470 VBN denotes described
T6229 471-472 -LRB- denotes (
T6230 472-474 CD denotes 50
T6231 474-475 -RRB- denotes )
T6232 475-476 . denotes .
R5255 T6139 T6140 compound Pseudotyped,virions
R5256 T6140 T6153 nsubjpass virions,transfected
R5257 T6141 T6140 cc and,virions
R5258 T6142 T6146 amod single,cells
R5259 T6143 T6146 amod round,cells
R5260 T6144 T6146 nmod infection,cells
R5261 T6145 T6146 amod 293T,cells
R5262 T6146 T6140 conj cells,virions
R5263 T6147 T6148 punct (,1
R5264 T6148 T6150 nummod 1,107
R5265 T6149 T6150 nummod ×,107
R5266 T6150 T6146 appos 107,cells
R5267 T6151 T6146 punct ),cells
R5268 T6152 T6153 auxpass were,transfected
R5269 T6153 T6153 ROOT transfected,transfected
R5270 T6154 T6153 prep with,transfected
R5271 T6155 T6154 pobj pNL4-3,with
R5272 T6156 T6153 punct .,transfected
R5273 T6157 T6153 punct Luc.R-E,transfected
R5274 T6158 T6157 punct -,Luc.R-E
R5275 T6159 T6157 cc or,Luc.R-E
R5276 T6160 T6157 conj pNL4-3,Luc.R-E
R5277 T6161 T6153 punct .,transfected
R5278 T6162 T6162 ROOT FLAG-Tat,FLAG-Tat
R5279 T6163 T6162 punct .,FLAG-Tat
R5280 T6164 T6162 punct R-E,FLAG-Tat
R5281 T6165 T6164 punct -,R-E
R5282 T6166 T6164 punct (,R-E
R5283 T6167 T6168 nummod 10,µg
R5284 T6168 T6164 appos µg,R-E
R5285 T6169 T6164 punct ),R-E
R5286 T6170 T6171 advmod together,with
R5287 T6171 T6185 prep with,collected
R5288 T6172 T6173 compound pHXB2,Env
R5289 T6173 T6171 pobj Env,with
R5290 T6174 T6176 punct (,µg
R5291 T6175 T6176 nummod 10,µg
R5292 T6176 T6173 appos µg,Env
R5293 T6177 T6176 punct ),µg
R5294 T6178 T6173 punct ",",Env
R5295 T6179 T6173 cc and,Env
R5296 T6180 T6183 amod 48-h,supernatant
R5297 T6181 T6182 amod post-transfection,cell
R5298 T6182 T6183 compound cell,supernatant
R5299 T6183 T6185 nsubjpass supernatant,collected
R5300 T6184 T6185 auxpass was,collected
R5301 T6185 T6185 ROOT collected,collected
R5302 T6186 T6185 punct .,collected
R5303 T6187 T6189 amod Enzyme-linked,assay
R5304 T6188 T6189 compound immunosorbent,assay
R5305 T6189 T6189 ROOT assay,assay
R5306 T6190 T6189 punct (,assay
R5307 T6191 T6189 appos ELISA,assay
R5308 T6192 T6189 punct ),assay
R5309 T6193 T6189 xcomp using,assay
R5310 T6194 T6195 amod anti-p24,antibody
R5311 T6195 T6193 dobj antibody,using
R5312 T6196 T6198 amod measured,concentration
R5313 T6197 T6198 compound virion,concentration
R5314 T6198 T6193 dobj concentration,using
R5315 T6199 T6189 punct .,assay
R5316 T6200 T6212 nsubjpass PBMCs,infected
R5317 T6201 T6200 punct ",",PBMCs
R5318 T6202 T6200 conj Jurkat,PBMCs
R5319 T6203 T6202 cc or,Jurkat
R5320 T6204 T6202 conj U937,Jurkat
R5321 T6205 T6202 conj cells,Jurkat
R5322 T6206 T6205 punct (,cells
R5323 T6207 T6209 quantmod 5,107
R5324 T6208 T6209 quantmod ×,107
R5325 T6209 T6205 appos 107,cells
R5326 T6210 T6205 punct ),cells
R5327 T6211 T6212 auxpass were,infected
R5328 T6212 T6212 ROOT infected,infected
R5329 T6213 T6212 prep with,infected
R5330 T6214 T6216 nmod HXB2,virions
R5331 T6215 T6216 compound Env-pseudotyped,virions
R5332 T6216 T6213 pobj virions,with
R5333 T6217 T6219 punct (,ng
R5334 T6218 T6219 nummod 500,ng
R5335 T6219 T6216 appos ng,virions
R5336 T6220 T6219 prep of,ng
R5337 T6221 T6220 pobj p24,of
R5338 T6222 T6219 punct ),ng
R5339 T6223 T6219 prep by,ng
R5340 T6224 T6223 pobj spinoculation,by
R5341 T6225 T6219 punct ",",ng
R5342 T6226 T6228 mark as,described
R5343 T6227 T6228 advmod previously,described
R5344 T6228 T6219 advcl described,ng
R5345 T6229 T6228 punct (,described
R5346 T6230 T6228 npadvmod 50,described
R5347 T6231 T6219 punct ),ng
R5348 T6232 T6212 punct .,infected

GO-MF

Id Subject Object Predicate Lexical cue
T6238 287-295 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody

GO-CC

Id Subject Object Predicate Lexical cue
T6239 12-19 http://purl.obolibrary.org/obo/GO_0019012 denotes virions
T6240 405-412 http://purl.obolibrary.org/obo/GO_0019012 denotes virions
T6241 52-57 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T6242 349-354 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T6243 287-295 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T6237 287-295 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody

sentences

Id Subject Object Predicate Lexical cue
T6045 0-46 Sentence denotes Pseudotyped virions and single round infection
T6046 47-229 Sentence denotes 293T cells (1 × 107) were transfected with pNL4-3.Luc.R-E- or pNL4-3.FLAG-Tat.R-E- (10 µg) together with pHXB2 Env (10 µg), and 48-h post-transfection cell supernatant was collected.
T6047 230-326 Sentence denotes Enzyme-linked immunosorbent assay (ELISA) using anti-p24 antibody measured virion concentration.
T6048 327-476 Sentence denotes PBMCs, Jurkat or U937 cells (5 × 107) were infected with HXB2 Env-pseudotyped virions (500 ng of p24) by spinoculation, as previously described (50).
T55 0-46 Sentence denotes Pseudotyped virions and single round infection
T56 47-229 Sentence denotes 293T cells (1 × 107) were transfected with pNL4-3.Luc.R-E- or pNL4-3.FLAG-Tat.R-E- (10 µg) together with pHXB2 Env (10 µg), and 48-h post-transfection cell supernatant was collected.
T57 230-326 Sentence denotes Enzyme-linked immunosorbent assay (ELISA) using anti-p24 antibody measured virion concentration.
T58 327-476 Sentence denotes PBMCs, Jurkat or U937 cells (5 × 107) were infected with HXB2 Env-pseudotyped virions (500 ng of p24) by spinoculation, as previously described (50).

events-check-again

Id Subject Object Predicate Lexical cue
T6264 121-124 Protein denotes Tat
T6265 158-161 Protein denotes Env
T6266 389-392 Protein denotes Env
T6267 424-427 Protein denotes p24

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T6268 283-286 Protein denotes p24
T6269 384-392 Protein denotes HXB2 Env
T6270 424-427 Protein denotes p24

test2

Id Subject Object Predicate Lexical cue
T6037 121-124 Protein denotes Tat
T6038 158-161 Protein denotes Env
T6039 389-392 Protein denotes Env
T6040 424-427 Protein denotes p24

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T6041 121-124 Protein denotes Tat
T6042 158-161 Protein denotes Env
T6043 389-392 Protein denotes Env
T6044 424-427 Protein denotes p24

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6125 121-124 P04605 denotes Tat
T6126 121-124 P04608 denotes Tat
T6127 121-124 P04610 denotes Tat
T6128 121-124 Q8UMQ1 denotes Tat
T6129 158-161 P04578 denotes Env
T6130 283-286 P03366 denotes p24
T6131 283-286 P04591 denotes p24
T6132 283-286 P04585 denotes p24
T6133 283-286 P12497 denotes p24
T6134 389-392 P04578 denotes Env
T6135 424-427 P04591 denotes p24
T6136 424-427 P04585 denotes p24
T6137 424-427 P12497 denotes p24
T6138 424-427 P03366 denotes p24