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PMC:3333881 / 4887-5126 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22187158-8676466-77584431 120-122 8676466 denotes 48
22187158-18329615-77584432 235-237 18329615 denotes 49

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2077 0-9 VB denotes Following
T2078 10-14 NN denotes gene
T2079 15-27 NN denotes transfection
T2080 28-30 CC denotes or
T2081 31-38 NN denotes protein
T2082 39-51 NN denotes transduction
T2083 51-52 -COMMA- denotes ,
T2084 53-56 NN denotes Tat
T2085 57-64 VB denotes induced
T2086 65-68 DT denotes the
T2087 69-72 NN denotes IKK
T2088 73-81 NN denotes activity
T2089 82-85 CC denotes and
T2090 86-97 JJ denotes proteasomal
T2091 98-109 NN denotes degradation
T2092 110-112 IN denotes of
T2093 113-118 NN denotes IκB-α
T2094 119-120 -LRB- denotes (
T2095 120-122 CD denotes 48
T2096 122-123 -RRB- denotes )
T2097 123-124 -COMMA- denotes ,
T2098 125-128 CC denotes and
T2099 129-138 VB denotes increased
T2100 139-142 DT denotes the
T2101 143-146 NN denotes p65
T2102 147-162 JJ denotes transcriptional
T2103 163-171 NN denotes activity
T2104 172-174 IN denotes by
T2105 175-185 VB denotes inhibiting
T2106 186-189 DT denotes the
T2107 190-205 JJ denotes SIRT-1-mediated
T2108 206-219 NN denotes deacetylation
T2109 220-222 IN denotes of
T2110 223-226 NN denotes p65
T2111 227-233 NN denotes Lys310
T2112 234-235 -LRB- denotes (
T2113 235-237 CD denotes 49
T2114 237-238 -RRB- denotes )
R1868 T2079 T2078 arg1Of transfection,gene
R1869 T2079 T2080 arg1Of transfection,or
R1870 T2080 T2077 arg2Of or,Following
R1872 T2082 T2080 arg2Of transduction,or
R1873 T2082 T2081 arg1Of transduction,protein
R1874 T2084 T2085 arg1Of Tat,induced
R1876 T2084 T2099 arg1Of Tat,increased
R1877 T2084 T2105 arg1Of Tat,inhibiting
R1878 T2085 T2098 arg1Of induced,and
R1880 T2088 T2087 arg1Of activity,IKK
R1881 T2088 T2089 arg1Of activity,and
R1884 T2089 T2085 arg2Of and,induced
R1885 T2089 T2086 arg1Of and,the
R1886 T2089 T2092 arg1Of and,of
R1888 T2091 T2089 arg2Of degradation,and
R1889 T2091 T2090 arg1Of degradation,proteasomal
R1891 T2093 T2092 arg2Of IκB-α,of
R1892 T2093 T2094 arg1Of IκB-α,(
R1893 T2095 T2094 arg2Of 48,(
R1894 T2096 T2094 arg3Of ),(
R1895 T2098 T2077 arg1Of and,Following
R1896 T2098 T2083 arg1Of and,","
R1897 T2098 T2097 arg1Of and,","
R1898 T2099 T2098 arg2Of increased,and
R1899 T2099 T2104 arg1Of increased,by
R1902 T2103 T2099 arg2Of activity,increased
R1903 T2103 T2100 arg1Of activity,the
R1904 T2103 T2101 arg1Of activity,p65
R1905 T2103 T2102 arg1Of activity,transcriptional
R1906 T2105 T2104 arg2Of inhibiting,by
R1909 T2108 T2105 arg2Of deacetylation,inhibiting
R1910 T2108 T2106 arg1Of deacetylation,the
R1911 T2108 T2107 arg1Of deacetylation,SIRT-1-mediated
R1912 T2108 T2109 arg1Of deacetylation,of
R1914 T2111 T2109 arg2Of Lys310,of
R1915 T2111 T2110 arg1Of Lys310,p65
R1916 T2111 T2112 arg1Of Lys310,(
R1917 T2113 T2112 arg2Of 49,(
R1918 T2114 T2112 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2980 0-9 VBG denotes Following
T2981 10-14 NN denotes gene
T2982 15-27 NN denotes transfection
T2983 28-30 CC denotes or
T2984 31-38 NN denotes protein
T2985 39-51 NN denotes transduction
T2986 51-52 , denotes ,
T2987 53-56 NNP denotes Tat
T2988 57-64 VBD denotes induced
T2989 65-68 DT denotes the
T2990 69-72 NNP denotes IKK
T2991 73-81 NN denotes activity
T2992 82-85 CC denotes and
T2993 86-97 JJ denotes proteasomal
T2994 98-109 NN denotes degradation
T2995 110-112 IN denotes of
T2996 113-118 NNP denotes IκB-α
T2997 119-120 -LRB- denotes (
T2998 120-122 CD denotes 48
T2999 122-123 -RRB- denotes )
T3000 123-124 , denotes ,
T3001 125-128 CC denotes and
T3002 129-138 VBD denotes increased
T3003 139-142 DT denotes the
T3004 143-146 NNS denotes p65
T3005 147-162 JJ denotes transcriptional
T3006 163-171 NN denotes activity
T3007 172-174 IN denotes by
T3008 175-185 VBG denotes inhibiting
T3009 186-189 DT denotes the
T3010 190-205 JJ denotes SIRT-1-mediated
T3011 206-219 NN denotes deacetylation
T3012 220-222 IN denotes of
T3013 223-226 CD denotes p65
T3014 227-233 NNP denotes Lys310
T3015 234-235 -LRB- denotes (
T3016 235-237 CD denotes 49
T3017 237-238 -RRB- denotes )
T3018 238-239 . denotes .
R2766 T2980 T2988 prep Following,induced
R2770 T2981 T2982 compound gene,transfection
R2771 T2982 T2980 pobj transfection,Following
R2773 T2983 T2982 cc or,transfection
R2777 T2984 T2985 compound protein,transduction
R2782 T2985 T2982 conj transduction,transfection
R2786 T2986 T2988 punct ",",induced
R2789 T2987 T2988 nsubj Tat,induced
R2791 T2988 T2988 ROOT induced,induced
R2795 T2989 T2991 det the,activity
R2798 T2990 T2991 compound IKK,activity
R2802 T2991 T2988 dobj activity,induced
R2809 T2992 T2991 cc and,activity
R2812 T2993 T2994 amod proteasomal,degradation
R2813 T2994 T2991 conj degradation,activity
R2814 T2995 T2994 prep of,degradation
R2815 T2996 T2995 pobj IκB-α,of
R2816 T2997 T2996 punct (,IκB-α
R2817 T2998 T2996 appos 48,IκB-α
R2818 T2999 T2996 punct ),IκB-α
R2819 T3000 T2988 punct ",",induced
R2820 T3001 T2988 cc and,induced
R2821 T3002 T2988 conj increased,induced
R2822 T3003 T3006 det the,activity
R2823 T3004 T3006 nmod p65,activity
R2824 T3005 T3006 compound transcriptional,activity
R2825 T3006 T3002 dobj activity,increased
R2826 T3007 T3002 prep by,increased
R2827 T3008 T3007 pcomp inhibiting,by
R2828 T3009 T3011 det the,deacetylation
R2829 T3010 T3011 amod SIRT-1-mediated,deacetylation
R2830 T3011 T3008 dobj deacetylation,inhibiting
R2831 T3012 T3011 prep of,deacetylation
R2832 T3013 T3014 compound p65,Lys310
R2833 T3014 T3012 pobj Lys310,of
R2834 T3015 T3014 punct (,Lys310
R2835 T3016 T3014 appos 49,Lys310
R2836 T3017 T3014 punct ),Lys310
R2837 T3018 T2988 punct .,induced

GO-BP

Id Subject Object Predicate Lexical cue
T3168 147-162 http://purl.obolibrary.org/obo/GO_0006351 denotes transcriptional
T3178 69-72 http://purl.obolibrary.org/obo/GO_0008384 denotes IKK
T3181 98-109 http://purl.obolibrary.org/obo/GO_0009056 denotes degradation
T3201 39-51 http://purl.obolibrary.org/obo/GO_0009293 denotes transduction

GO-MF

Id Subject Object Predicate Lexical cue
T3237 69-72 http://purl.obolibrary.org/obo/GO_0008384 denotes IKK

sentences

Id Subject Object Predicate Lexical cue
T1449 0-239 Sentence denotes Following gene transfection or protein transduction, Tat induced the IKK activity and proteasomal degradation of IκB-α (48), and increased the p65 transcriptional activity by inhibiting the SIRT-1-mediated deacetylation of p65 Lys310 (49).
T31 0-239 Sentence denotes Following gene transfection or protein transduction, Tat induced the IKK activity and proteasomal degradation of IκB-α (48), and increased the p65 transcriptional activity by inhibiting the SIRT-1-mediated deacetylation of p65 Lys310 (49).

events-check-again

Id Subject Object Predicate Lexical cue
T4162 53-56 Protein denotes Tat
T4163 57-64 Positive_regulation denotes induced
T4164 98-109 Protein_catabolism denotes degradation
T4165 113-118 Protein denotes IκB-α
T4166 143-146 Protein denotes p65
T4167 175-185 Negative_regulation denotes inhibiting
T4168 190-196 Protein denotes SIRT-1
T4169 197-205 Positive_regulation denotes mediated
T4170 206-219 Deacetylation denotes deacetylation
T4171 223-226 Protein denotes p65
T4172 227-233 Entity denotes Lys310
R3737 T4162 T4163 causeOf Tat,induced
R3738 T4162 T4167 causeOf Tat,inhibiting
R3740 T4164 T4163 themeOf degradation,induced
R3742 T4165 T4164 themeOf IκB-α,degradation
R3744 T4168 T4169 causeOf SIRT-1,mediated
R3746 T4169 T4167 themeOf mediated,inhibiting
R3747 T4170 T4169 themeOf deacetylation,mediated
R3750 T4172 T4170 themeOf Lys310,deacetylation
R3751 T4172 T4171 partOf Lys310,p65

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T4325 53-56 Protein denotes Tat
T4326 69-72 Protein denotes IKK
T4327 113-118 Protein denotes IκB-α
T4328 143-146 Protein denotes p65
T4329 190-196 Protein denotes SIRT-1
T4330 223-233 Protein denotes p65 Lys310
T4331 57-64 Positive_regulation denotes induced
T4332 98-109 Protein_catabolism denotes degradation
T4333 98-109 Protein_catabolism denotes degradation
T4334 129-138 Positive_regulation denotes increased
T4335 57-64 Positive_regulation denotes induced
T4336 57-64 Positive_regulation denotes induced
R3960 T4325 T4331 causeOf Tat,induced
R3961 T4325 T4334 causeOf Tat,increased
R3962 T4325 T4335 causeOf Tat,induced
R3963 T4325 T4336 causeOf Tat,induced
R3964 T4326 T4331 themeOf IKK,induced
R3965 T4326 T4332 themeOf IKK,degradation
R3966 T4327 T4333 themeOf IκB-α,degradation
R3968 T4328 T4334 themeOf p65,increased
R3971 T4332 T4335 themeOf degradation,induced
R3972 T4333 T4336 themeOf degradation,induced

test2

Id Subject Object Predicate Lexical cue
T1215 53-56 Protein denotes Tat
T1216 57-64 Positive_regulation denotes induced
T1217 98-109 Protein_catabolism denotes degradation
T1218 113-118 Protein denotes IκB-α
T1219 129-138 Positive_regulation denotes increased
T1220 143-146 Protein denotes p65
T1221 147-162 Transcription denotes transcriptional
T1222 175-185 Negative_regulation denotes inhibiting
T1223 190-196 Protein denotes SIRT-1
T1224 197-205 Positive_regulation denotes mediated
T1225 206-219 Negative_regulation denotes deacetylation
T1226 223-226 Protein denotes p65
R1035 T1215 T1219 causeOf Tat,increased
R1036 T1215 T1216 causeOf Tat,induced
R1037 T1215 T1222 causeOf Tat,inhibiting
R1038 T1217 T1216 themeOf degradation,induced
R1039 T1218 T1217 themeOf IκB-α,degradation
R1040 T1220 T1221 themeOf p65,transcriptional
R1041 T1221 T1219 themeOf transcriptional,increased
R1042 T1222 T1219 causeOf inhibiting,increased
R1043 T1223 T1224 causeOf SIRT-1,mediated
R1044 T1224 T1222 themeOf mediated,inhibiting
R1045 T1225 T1224 themeOf deacetylation,mediated
R1046 T1226 T1225 themeOf p65,deacetylation

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1407 53-56 Protein denotes Tat
T1408 57-64 Positive_regulation denotes induced
T1409 98-109 Protein_catabolism denotes degradation
T1410 113-118 Protein denotes IκB-α
T1411 143-146 Protein denotes p65
T1412 175-185 Negative_regulation denotes inhibiting
T1413 190-196 Protein denotes SIRT-1
T1414 197-205 Positive_regulation denotes mediated
T1415 206-219 Deacetylation denotes deacetylation
T1416 223-226 Protein denotes p65
T1417 227-233 Entity denotes Lys310
R1261 T1407 T1408 causeOf Tat,induced
R1262 T1407 T1412 causeOf Tat,inhibiting
R1263 T1409 T1408 themeOf degradation,induced
R1264 T1410 T1409 themeOf IκB-α,degradation
R1265 T1413 T1414 causeOf SIRT-1,mediated
R1266 T1414 T1412 themeOf mediated,inhibiting
R1267 T1415 T1414 themeOf deacetylation,mediated
R1268 T1417 T1415 themeOf Lys310,deacetylation
R1269 T1417 T1416 partOf Lys310,p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2303 53-56 P04605 denotes Tat
T2304 53-56 P04608 denotes Tat
T2305 53-56 P04610 denotes Tat
T2306 53-56 Q8UMQ1 denotes Tat
T2307 143-146 Q04206 denotes p65
T2308 143-146 P21579 denotes p65
T2309 223-226 Q04206 denotes p65
T2310 223-226 P21579 denotes p65