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PMC:3333881 / 4695-4953 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22187158-10397733-77584427 22-24 10397733 denotes 44
22187158-8946838-77584428 46-48 8946838 denotes 45
22187158-9789057-77584429 75-77 9789057 denotes 46
22187158-8113688-77584430 187-189 8113688 denotes 47

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2038 1-2 -COMMA- denotes ,
T2039 3-7 JJ denotes such
T2040 8-10 IN denotes as
T2041 11-20 NN denotes integrins
T2042 21-22 -LRB- denotes (
T2043 22-24 CD denotes 44
T2044 24-25 -RRB- denotes )
T2045 25-26 -COMMA- denotes ,
T2046 27-35 NN denotes Flk1/KDR
T2047 36-44 NN denotes receptor
T2048 45-46 -LRB- denotes (
T2049 46-48 CD denotes 45
T2050 48-49 -RRB- denotes )
T2051 50-53 CC denotes and
T2052 54-63 NN denotes chemokine
T2053 64-73 NN denotes receptors
T2054 74-75 -LRB- denotes (
T2055 75-77 CD denotes 46
T2056 77-78 -RRB- denotes )
T2057 80-82 PRP denotes We
T2058 83-88 RB denotes first
T2059 89-97 VB denotes reported
T2060 98-102 IN denotes that
T2061 103-108 NN denotes NF-κB
T2062 109-112 VB denotes was
T2063 113-127 RB denotes constitutively
T2064 128-134 JJ denotes active
T2065 135-137 IN denotes in
T2066 138-144 NN denotes Jurkat
T2067 145-150 NN denotes cells
T2068 151-155 WDT denotes that
T2069 156-162 RB denotes stably
T2070 163-172 VB denotes expressed
T2071 173-176 DT denotes the
T2072 177-180 NN denotes Tat
T2073 181-185 NN denotes gene
T2074 186-187 -LRB- denotes (
T2075 187-189 CD denotes 47
T2076 189-190 -RRB- denotes )
T2077 192-201 VB denotes Following
T2078 202-206 NN denotes gene
T2079 207-219 NN denotes transfection
T2080 220-222 CC denotes or
T2081 223-230 NN denotes protein
T2082 231-243 NN denotes transduction
T2083 243-244 -COMMA- denotes ,
T2084 245-248 NN denotes Tat
T2085 249-256 VB denotes induced
R1816 T2040 T2039 arg1Of as,such
R1817 T2041 T2042 arg1Of integrins,(
R1818 T2041 T2045 arg1Of integrins,","
R1820 T2043 T2042 arg2Of 44,(
R1821 T2044 T2042 arg3Of ),(
R1823 T2045 T2051 arg1Of ",",and
R1824 T2047 T2045 arg2Of receptor,","
R1825 T2047 T2046 arg1Of receptor,Flk1/KDR
R1826 T2047 T2048 arg1Of receptor,(
R1827 T2049 T2048 arg2Of 45,(
R1828 T2050 T2048 arg3Of ),(
R1829 T2051 T2040 arg2Of and,as
R1832 T2053 T2051 arg2Of receptors,and
R1833 T2053 T2052 arg1Of receptors,chemokine
R1834 T2053 T2054 arg1Of receptors,(
R1836 T2055 T2054 arg2Of 46,(
R1839 T2056 T2054 arg3Of ),(
R1840 T2057 T2059 arg1Of We,reported
R1841 T2059 T2058 arg1Of reported,first
R1843 T2061 T2062 arg1Of NF-κB,was
R1844 T2061 T2064 arg1Of NF-κB,active
R1845 T2062 T2059 arg2Of was,reported
R1846 T2062 T2060 arg1Of was,that
R1847 T2064 T2062 arg2Of active,was
R1848 T2064 T2063 arg1Of active,constitutively
R1849 T2064 T2065 arg1Of active,in
R1850 T2067 T2065 arg2Of cells,in
R1851 T2067 T2066 arg1Of cells,Jurkat
R1852 T2067 T2068 arg1Of cells,that
R1853 T2067 T2070 arg1Of cells,expressed
R1855 T2070 T2069 arg1Of expressed,stably
R1858 T2073 T2070 arg2Of gene,expressed
R1859 T2073 T2071 arg1Of gene,the
R1860 T2073 T2072 arg1Of gene,Tat
R1861 T2073 T2074 arg1Of gene,(
R1863 T2075 T2074 arg2Of 47,(
R1865 T2076 T2074 arg3Of ),(
R1868 T2079 T2078 arg1Of transfection,gene
R1869 T2079 T2080 arg1Of transfection,or
R1870 T2080 T2077 arg2Of or,Following
R1872 T2082 T2080 arg2Of transduction,or
R1873 T2082 T2081 arg1Of transduction,protein
R1874 T2084 T2085 arg1Of Tat,induced

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2939 1-2 , denotes ,
T2940 3-7 JJ denotes such
T2941 8-10 IN denotes as
T2942 11-20 NNS denotes integrins
T2943 21-22 -LRB- denotes (
T2944 22-24 CD denotes 44
T2945 24-25 -RRB- denotes )
T2946 25-26 , denotes ,
T2947 27-35 NN denotes Flk1/KDR
T2948 36-44 NN denotes receptor
T2949 45-46 -LRB- denotes (
T2950 46-48 CD denotes 45
T2951 48-49 -RRB- denotes )
T2952 50-53 CC denotes and
T2953 54-63 JJ denotes chemokine
T2954 64-73 NNS denotes receptors
T2955 74-75 -LRB- denotes (
T2956 75-77 CD denotes 46
T2957 77-78 -RRB- denotes )
T2958 78-79 . denotes .
T2959 80-82 PRP denotes We
T2960 83-88 RB denotes first
T2961 89-97 VBD denotes reported
T2962 98-102 IN denotes that
T2963 103-108 NNP denotes NF-κB
T2964 109-112 VBD denotes was
T2965 113-127 RB denotes constitutively
T2966 128-134 JJ denotes active
T2967 135-137 IN denotes in
T2968 138-144 NNP denotes Jurkat
T2969 145-150 NNS denotes cells
T2970 151-155 WDT denotes that
T2971 156-162 RB denotes stably
T2972 163-172 VBD denotes expressed
T2973 173-176 DT denotes the
T2974 177-180 NNP denotes Tat
T2975 181-185 NN denotes gene
T2976 186-187 -LRB- denotes (
T2977 187-189 CD denotes 47
T2978 189-190 -RRB- denotes )
T2979 190-191 . denotes .
T2980 192-201 VBG denotes Following
T2981 202-206 NN denotes gene
T2982 207-219 NN denotes transfection
T2983 220-222 CC denotes or
T2984 223-230 NN denotes protein
T2985 231-243 NN denotes transduction
T2986 243-244 , denotes ,
T2987 245-248 NNP denotes Tat
T2988 249-256 VBD denotes induced
R2676 T2940 T2941 amod such,as
R2678 T2942 T2941 pobj integrins,as
R2679 T2943 T2942 punct (,integrins
R2680 T2959 T2961 nsubj We,reported
R2681 T2944 T2942 appos 44,integrins
R2682 T2945 T2942 punct ),integrins
R2684 T2947 T2948 compound Flk1/KDR,receptor
R2685 T2960 T2961 advmod first,reported
R2687 T2949 T2948 punct (,receptor
R2688 T2950 T2948 appos 45,receptor
R2689 T2951 T2948 punct ),receptor
R2690 T2961 T2961 ROOT reported,reported
R2691 T2952 T2948 cc and,receptor
R2692 T2953 T2954 amod chemokine,receptors
R2693 T2954 T2948 conj receptors,receptor
R2694 T2962 T2964 mark that,was
R2695 T2955 T2954 punct (,receptors
R2696 T2956 T2954 appos 46,receptors
R2697 T2957 T2954 punct ),receptors
R2699 T2963 T2964 nsubj NF-κB,was
R2700 T2964 T2961 ccomp was,reported
R2701 T2965 T2966 advmod constitutively,active
R2702 T2966 T2964 acomp active,was
R2706 T2967 T2966 prep in,active
R2710 T2968 T2969 compound Jurkat,cells
R2714 T2969 T2967 pobj cells,in
R2718 T2970 T2972 nsubj that,expressed
R2722 T2971 T2972 advmod stably,expressed
R2725 T2972 T2961 ccomp expressed,reported
R2730 T2973 T2975 det the,gene
R2734 T2974 T2975 compound Tat,gene
R2743 T2975 T2972 dobj gene,expressed
R2747 T2976 T2975 punct (,gene
R2751 T2977 T2975 appos 47,gene
R2757 T2978 T2975 punct ),gene
R2762 T2979 T2961 punct .,reported
R2766 T2980 T2988 prep Following,induced
R2770 T2981 T2982 compound gene,transfection
R2771 T2982 T2980 pobj transfection,Following
R2773 T2983 T2982 cc or,transfection
R2777 T2984 T2985 compound protein,transduction
R2782 T2985 T2982 conj transduction,transfection
R2786 T2986 T2988 punct ",",induced
R2789 T2987 T2988 nsubj Tat,induced
R2791 T2988 T2988 ROOT induced,induced

GO-BP

Id Subject Object Predicate Lexical cue
T3201 231-243 http://purl.obolibrary.org/obo/GO_0009293 denotes transduction

GO-CC

Id Subject Object Predicate Lexical cue
T3216 145-150 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T1448 80-191 Sentence denotes We first reported that NF-κB was constitutively active in Jurkat cells that stably expressed the Tat gene (47).
T30 80-191 Sentence denotes We first reported that NF-κB was constitutively active in Jurkat cells that stably expressed the Tat gene (47).

events-check-again

Id Subject Object Predicate Lexical cue
T4159 27-44 Protein denotes Flk1/KDR receptor
T4160 163-172 Gene_expression denotes expressed
T4161 177-180 Protein denotes Tat
T4162 245-248 Protein denotes Tat
T4163 249-256 Positive_regulation denotes induced
R3735 T4161 T4160 themeOf Tat,expressed
R3737 T4162 T4163 causeOf Tat,induced

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T4317 27-31 Protein denotes Flk1
T4318 32-35 Protein denotes KDR
T4322 103-108 Protein denotes NF-κB
T4323 177-180 Protein denotes Tat
T4324 163-172 Gene_expression denotes expressed
T4325 245-248 Protein denotes Tat
T4331 249-256 Positive_regulation denotes induced
T4335 249-256 Positive_regulation denotes induced
T4336 249-256 Positive_regulation denotes induced
R3958 T4323 T4324 themeOf Tat,expressed
R3960 T4325 T4331 causeOf Tat,induced
R3962 T4325 T4335 causeOf Tat,induced
R3963 T4325 T4336 causeOf Tat,induced

test2

Id Subject Object Predicate Lexical cue
T1212 27-44 Protein denotes Flk1/KDR receptor
T1213 163-172 Gene_expression denotes expressed
T1214 177-180 Protein denotes Tat
T1215 245-248 Protein denotes Tat
T1216 249-256 Positive_regulation denotes induced
R1034 T1214 T1213 themeOf Tat,expressed
R1036 T1215 T1216 causeOf Tat,induced

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1404 27-44 Protein denotes Flk1/KDR receptor
T1405 163-172 Gene_expression denotes expressed
T1406 177-180 Protein denotes Tat
T1407 245-248 Protein denotes Tat
T1408 249-256 Positive_regulation denotes induced
R1260 T1406 T1405 themeOf Tat,expressed
R1261 T1407 T1408 causeOf Tat,induced

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2299 177-180 P04610 denotes Tat
T2300 177-180 Q8UMQ1 denotes Tat
T2301 177-180 P04608 denotes Tat
T2302 177-180 P04605 denotes Tat
T2303 245-248 P04605 denotes Tat
T2304 245-248 P04608 denotes Tat
T2305 245-248 P04610 denotes Tat
T2306 245-248 Q8UMQ1 denotes Tat