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PMC:3333881 / 44833-45025 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
22187158-8139045-77584475 182-184 8139045 denotes 33
22187158-12055184-77584476 185-187 12055184 denotes 37
22187158-8113688-77584477 188-190 8113688 denotes 47

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T20734 0-2 IN denotes In
T20735 3-6 DT denotes the
T20736 7-11 NN denotes case
T20737 12-14 IN denotes of
T20738 15-20 NN denotes TNF-α
T20739 21-24 CC denotes and
T20740 25-29 NN denotes IL-6
T20741 29-30 -COMMA- denotes ,
T20742 31-34 NN denotes Tat
T20743 35-44 VB denotes activated
T20744 45-48 DT denotes the
T20745 49-57 NN denotes cytokine
T20746 58-68 NN denotes expression
T20747 69-71 IN denotes by
T20748 72-79 VB denotes binding
T20749 80-82 TO denotes to
T20750 83-86 DT denotes the
T20751 87-95 JJ denotes TAR-like
T20752 96-100 NN denotes stem
T20753 101-105 NN denotes loop
T20754 106-108 IN denotes of
T20755 109-112 DT denotes the
T20756 113-115 NN denotes 5′
T20757 116-126 NN denotes transcript
T20758 126-127 -COMMA- denotes ,
T20759 128-132 RB denotes thus
T20760 133-139 RB denotes likely
T20761 140-149 VB denotes promoting
T20762 150-153 DT denotes the
T20763 154-169 JJ denotes transcriptional
T20764 170-180 NN denotes elongation
T20765 181-182 -LRB- denotes (
T20766 182-190 CD denotes 33,37,47
T20767 190-191 -RRB- denotes )
R16701 T20736 T20734 arg2Of case,In
R16702 T20736 T20735 arg1Of case,the
R16703 T20736 T20737 arg1Of case,of
R16704 T20738 T20739 arg1Of TNF-α,and
R16705 T20739 T20737 arg2Of and,of
R16706 T20740 T20739 arg2Of IL-6,and
R16707 T20742 T20743 arg1Of Tat,activated
R16708 T20742 T20748 arg1Of Tat,binding
R16709 T20742 T20761 arg1Of Tat,promoting
R16710 T20743 T20734 arg1Of activated,In
R16711 T20743 T20741 arg1Of activated,","
R16712 T20743 T20747 arg1Of activated,by
R16713 T20746 T20743 arg2Of expression,activated
R16714 T20746 T20744 arg1Of expression,the
R16715 T20746 T20745 arg1Of expression,cytokine
R16716 T20748 T20749 arg1Of binding,to
R16717 T20748 T20758 arg1Of binding,","
R16718 T20753 T20749 arg2Of loop,to
R16719 T20753 T20750 arg1Of loop,the
R16720 T20753 T20751 arg1Of loop,TAR-like
R16721 T20753 T20752 arg1Of loop,stem
R16722 T20753 T20754 arg1Of loop,of
R16723 T20757 T20754 arg2Of transcript,of
R16724 T20757 T20755 arg1Of transcript,the
R16725 T20757 T20756 arg1Of transcript,5′
R16726 T20758 T20747 arg2Of ",",by
R16727 T20761 T20758 arg2Of promoting,","
R16728 T20761 T20759 arg1Of promoting,thus
R16729 T20761 T20760 arg1Of promoting,likely
R16730 T20764 T20761 arg2Of elongation,promoting
R16731 T20764 T20762 arg1Of elongation,the
R16732 T20764 T20763 arg1Of elongation,transcriptional
R16733 T20764 T20765 arg1Of elongation,(
R16734 T20766 T20765 arg2Of "33,37,47",(
R16735 T20767 T20765 arg3Of ),(

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T20964 45-57 Anaphor denotes the cytokine
T20965 15-20 Antecedent denotes TNF-α
T20966 25-29 Antecedent denotes IL-6
T20967 109-126 Anaphor denotes the 5′ transcript
T20968 45-57 Antecedent denotes the cytokine
R16928 T20964 T20965 boundBy the cytokine,TNF-α
R16929 T20964 T20966 boundBy the cytokine,IL-6
R16930 T20967 T20964 boundBy the 5′ transcript,the cytokine

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T22096 0-2 IN denotes In
T22097 3-6 DT denotes the
T22098 7-11 NN denotes case
T22099 12-14 IN denotes of
T22100 15-20 NNP denotes TNF-α
T22101 21-24 CC denotes and
T22102 25-29 NNP denotes IL-6
T22103 29-30 , denotes ,
T22104 31-34 NNP denotes Tat
T22105 35-44 VBD denotes activated
T22106 45-48 DT denotes the
T22107 49-57 NN denotes cytokine
T22108 58-68 NN denotes expression
T22109 69-71 IN denotes by
T22110 72-79 JJ denotes binding
T22111 80-82 TO denotes to
T22112 83-86 DT denotes the
T22113 87-95 JJ denotes TAR-like
T22114 96-100 NN denotes stem
T22115 101-105 NN denotes loop
T22116 106-108 IN denotes of
T22117 109-112 DT denotes the
T22118 113-114 CD denotes 5
T22119 114-115 NN denotes ′
T22120 116-126 NN denotes transcript
T22121 126-127 , denotes ,
T22122 128-132 RB denotes thus
T22123 133-139 JJ denotes likely
T22124 140-149 VBG denotes promoting
T22125 150-153 DT denotes the
T22126 154-169 JJ denotes transcriptional
T22127 170-180 NN denotes elongation
T22128 181-182 -LRB- denotes (
T22129 182-190 CD denotes 33,37,47
T22130 190-191 -RRB- denotes )
T22131 191-192 . denotes .
R17787 T22096 T22105 prep In,activated
R17788 T22097 T22098 det the,case
R17789 T22098 T22096 pobj case,In
R17790 T22099 T22098 prep of,case
R17791 T22100 T22099 pobj TNF-α,of
R17792 T22101 T22100 cc and,TNF-α
R17793 T22102 T22100 conj IL-6,TNF-α
R17808 T22117 T22120 det the,transcript
R17809 T22118 T22119 nummod 5,′
R17810 T22119 T22120 compound ′,transcript
R17811 T22120 T22116 pobj transcript,of
R17812 T22121 T22105 punct ",",activated
R17813 T22122 T22123 advmod thus,likely
R17814 T22123 T22105 advcl likely,activated
R17815 T22124 T22123 xcomp promoting,likely
R17816 T22125 T22127 det the,elongation
R17817 T22126 T22127 amod transcriptional,elongation
R17818 T22127 T22124 dobj elongation,promoting
R17819 T22128 T22127 punct (,elongation
R17820 T22129 T22127 appos "33,37,47",elongation
R17821 T22130 T22127 punct ),elongation
R17822 T22131 T22105 punct .,activated
R17794 T22103 T22105 punct ",",activated
R17795 T22104 T22105 nsubj Tat,activated
R17796 T22105 T22105 ROOT activated,activated
R17797 T22106 T22108 det the,expression
R17798 T22107 T22108 compound cytokine,expression
R17799 T22108 T22105 dobj expression,activated
R17800 T22109 T22108 prep by,expression
R17801 T22110 T22109 pcomp binding,by
R17802 T22111 T22110 prep to,binding
R17803 T22112 T22115 det the,loop
R17804 T22113 T22115 amod TAR-like,loop
R17805 T22114 T22115 compound stem,loop
R17806 T22115 T22111 pobj loop,to
R17807 T22116 T22115 prep of,loop

GO-BP

Id Subject Object Predicate Lexical cue
T22329 154-169 http://purl.obolibrary.org/obo/GO_0006351 denotes transcriptional

GO-MF

Id Subject Object Predicate Lexical cue
T22377 72-79 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T22383 25-29 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6

sentences

Id Subject Object Predicate Lexical cue
T19904 0-192 Sentence denotes In the case of TNF-α and IL-6, Tat activated the cytokine expression by binding to the TAR-like stem loop of the 5′ transcript, thus likely promoting the transcriptional elongation (33,37,47).
T261 0-192 Sentence denotes In the case of TNF-α and IL-6, Tat activated the cytokine expression by binding to the TAR-like stem loop of the 5′ transcript, thus likely promoting the transcriptional elongation (33,37,47).

events-check-again

Id Subject Object Predicate Lexical cue Speculation
T23574 15-20 Protein denotes TNF-α
T23575 25-29 Protein denotes IL-6
T23576 31-34 Protein denotes Tat
T23577 35-44 Positive_regulation denotes activated
T23578 35-44 Positive_regulation denotes activated
T23579 35-44 Positive_regulation denotes activated
T23580 35-44 Positive_regulation denotes activated
T23581 35-44 Positive_regulation denotes activated
T23582 35-44 Positive_regulation denotes activated
T23583 58-68 Gene_expression denotes expression
T23584 58-68 Gene_expression denotes expression
T23585 72-79 Binding denotes binding
T23586 140-149 Positive_regulation denotes promoting true
T23587 140-149 Positive_regulation denotes promoting true
T23588 154-180 Transcription denotes transcriptional elongation
T23589 154-180 Transcription denotes transcriptional elongation
R18889 T23574 T23584 themeOf TNF-α,expression
R18890 T23574 T23588 themeOf TNF-α,transcriptional elongation
R18892 T23575 T23583 themeOf IL-6,expression
R18893 T23575 T23589 themeOf IL-6,transcriptional elongation
R18894 T23576 T23585 themeOf Tat,binding
R18897 T23583 T23580 themeOf expression,activated
R18898 T23583 T23577 themeOf expression,activated
R18899 T23583 T23581 themeOf expression,activated
R18900 T23584 T23582 themeOf expression,activated
R18901 T23584 T23578 themeOf expression,activated
R18902 T23584 T23579 themeOf expression,activated
R18903 T23585 T23582 causeOf binding,activated
R18904 T23585 T23587 causeOf binding,promoting
R18905 T23585 T23586 causeOf binding,promoting
R18906 T23585 T23580 causeOf binding,activated
R18907 T23586 T23579 causeOf promoting,activated
R18908 T23586 T23581 causeOf promoting,activated
R18909 T23587 T23578 causeOf promoting,activated
R18910 T23587 T23577 causeOf promoting,activated
R18912 T23588 T23587 themeOf transcriptional elongation,promoting
R18914 T23589 T23586 themeOf transcriptional elongation,promoting

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T23840 15-20 Protein denotes TNF-α
T23841 25-29 Protein denotes IL-6
T23842 31-34 Protein denotes Tat

test2

Id Subject Object Predicate Lexical cue
T19642 15-20 Protein denotes TNF-α
T19643 25-29 Protein denotes IL-6
T19644 31-34 Protein denotes Tat
T19645 35-44 Positive_regulation denotes activated
T19646 72-79 Binding denotes binding
R15685 T19644 T19646 themeOf Tat,binding

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Speculation
T19848 15-20 Protein denotes TNF-α
T19849 25-29 Protein denotes IL-6
T19850 31-34 Protein denotes Tat
T19851 35-44 Positive_regulation denotes activated
T19852 35-44 Positive_regulation denotes activated
T19853 35-44 Positive_regulation denotes activated
T19854 35-44 Positive_regulation denotes activated
T19855 35-44 Positive_regulation denotes activated
T19856 35-44 Positive_regulation denotes activated
T19857 58-68 Gene_expression denotes expression
T19858 58-68 Gene_expression denotes expression
T19859 72-79 Binding denotes binding
T19860 140-149 Positive_regulation denotes promoting true
T19861 140-149 Positive_regulation denotes promoting true
T19862 154-180 Transcription denotes transcriptional elongation
T19863 154-180 Transcription denotes transcriptional elongation
R15832 T19848 T19858 themeOf TNF-α,expression
R15833 T19848 T19862 themeOf TNF-α,transcriptional elongation
R15834 T19849 T19857 themeOf IL-6,expression
R15835 T19849 T19863 themeOf IL-6,transcriptional elongation
R15836 T19850 T19859 themeOf Tat,binding
R15837 T19857 T19854 themeOf expression,activated
R15838 T19857 T19851 themeOf expression,activated
R15839 T19857 T19855 themeOf expression,activated
R15840 T19858 T19856 themeOf expression,activated
R15841 T19858 T19852 themeOf expression,activated
R15842 T19858 T19853 themeOf expression,activated
R15843 T19859 T19856 causeOf binding,activated
R15844 T19859 T19861 causeOf binding,promoting
R15845 T19859 T19860 causeOf binding,promoting
R15846 T19859 T19854 causeOf binding,activated
R15847 T19860 T19853 causeOf promoting,activated
R15848 T19860 T19855 causeOf promoting,activated
R15849 T19861 T19852 causeOf promoting,activated
R15850 T19861 T19851 causeOf promoting,activated
R15851 T19862 T19861 themeOf transcriptional elongation,promoting
R15852 T19863 T19860 themeOf transcriptional elongation,promoting

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T21174 15-18 P01375 denotes TNF
T21175 15-20 P01375 denotes TNF-α
T21176 25-29 P05231 denotes IL-6
T21177 31-34 P04605 denotes Tat
T21178 31-34 P04608 denotes Tat
T21179 31-34 P04610 denotes Tat
T21180 31-34 Q8UMQ1 denotes Tat