PMC:3333881 / 4079-4328 JSONTXT

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    2_test

    {"project":"2_test","denotations":[{"id":"22187158-2478293-77584417","span":{"begin":147,"end":149},"obj":"2478293"},{"id":"22187158-8139045-77584418","span":{"begin":184,"end":186},"obj":"8139045"},{"id":"22187158-9169458-77584419","span":{"begin":214,"end":216},"obj":"9169458"}],"text":"Tat binds to RNA stem-loop structures generated by the 5′ end of target transcripts, including the HIV-1 transactivation-responsive element (TAR) (32), tumor necrosis factor β (TNFβ) (33) and interleukin-6 (IL-6) (34) to activate gene transcription."}

    pmc-enju-pas

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binds to RNA stem-loop structures generated by the 5′ end of target transcripts, including the HIV-1 transactivation-responsive element (TAR) (32), tumor necrosis factor β (TNFβ) (33) and interleukin-6 (IL-6) (34) to activate gene transcription."}

    bionlp-st-ge-2016-spacy-parsed

    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binds to RNA stem-loop structures generated by the 5′ end of target transcripts, including the HIV-1 transactivation-responsive element (TAR) (32), tumor necrosis factor β (TNFβ) (33) and interleukin-6 (IL-6) (34) to activate gene transcription."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T3166","span":{"begin":235,"end":248},"obj":"http://purl.obolibrary.org/obo/GO_0006351"},{"id":"T3193","span":{"begin":105,"end":120},"obj":"http://purl.obolibrary.org/obo/GO_2000144"},{"id":"T3194","span":{"begin":158,"end":166},"obj":"http://purl.obolibrary.org/obo/GO_0001906"},{"id":"T3195","span":{"begin":158,"end":166},"obj":"http://purl.obolibrary.org/obo/GO_0008219"},{"id":"T3196","span":{"begin":158,"end":166},"obj":"http://purl.obolibrary.org/obo/GO_0019835"},{"id":"T3197","span":{"begin":158,"end":166},"obj":"http://purl.obolibrary.org/obo/GO_0070265"}],"text":"Tat binds to RNA stem-loop structures generated by the 5′ end of target transcripts, including the HIV-1 transactivation-responsive element (TAR) (32), tumor necrosis factor β (TNFβ) (33) and interleukin-6 (IL-6) (34) to activate gene transcription."}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T3241","span":{"begin":204,"end":209},"obj":"http://purl.obolibrary.org/obo/GO_0005138"}],"text":"Tat binds to RNA stem-loop structures generated by the 5′ end of target transcripts, including the HIV-1 transactivation-responsive element (TAR) (32), tumor necrosis factor β (TNFβ) (33) and interleukin-6 (IL-6) (34) to activate gene transcription."}

    sentences

    {"project":"sentences","denotations":[{"id":"T1445","span":{"begin":0,"end":249},"obj":"Sentence"},{"id":"T27","span":{"begin":0,"end":249},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Tat binds to RNA stem-loop structures generated by the 5′ end of target transcripts, including the HIV-1 transactivation-responsive element (TAR) (32), tumor necrosis factor β (TNFβ) (33) and interleukin-6 (IL-6) (34) to activate gene transcription."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T4127","span":{"begin":0,"end":3},"obj":"Protein"},{"id":"T4128","span":{"begin":4,"end":9},"obj":"Binding"},{"id":"T4129","span":{"begin":152,"end":175},"obj":"Protein"},{"id":"T4130","span":{"begin":177,"end":181},"obj":"Protein"},{"id":"T4131","span":{"begin":192,"end":205},"obj":"Protein"},{"id":"T4132","span":{"begin":207,"end":211},"obj":"Protein"},{"id":"T4133","span":{"begin":221,"end":229},"obj":"Positive_regulation"},{"id":"T4134","span":{"begin":221,"end":229},"obj":"Positive_regulation"},{"id":"T4135","span":{"begin":235,"end":248},"obj":"Transcription"},{"id":"T4136","span":{"begin":235,"end":248},"obj":"Transcription"}],"relations":[{"id":"R3990","pred":"themeOf","subj":"T4127","obj":"T4128"},{"id":"R3992","pred":"causeOf","subj":"T4128","obj":"T4134"},{"id":"R3993","pred":"causeOf","subj":"T4128","obj":"T4133"},{"id":"R3994","pred":"themeOf","subj":"T4129","obj":"T4135"},{"id":"R3995","pred":"equivalentTo","subj":"T4130","obj":"T4129"},{"id":"R3996","pred":"themeOf","subj":"T4131","obj":"T4136"},{"id":"R3997","pred":"equivalentTo","subj":"T4132","obj":"T4131"},{"id":"R3998","pred":"themeOf","subj":"T4135","obj":"T4134"},{"id":"R3999","pred":"themeOf","subj":"T4136","obj":"T4133"}],"text":"Tat binds to RNA stem-loop structures generated by the 5′ end of target transcripts, including the HIV-1 transactivation-responsive element (TAR) (32), tumor necrosis factor β (TNFβ) (33) and interleukin-6 (IL-6) (34) to activate gene transcription."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T4275","span":{"begin":0,"end":3},"obj":"Protein"},{"id":"T4276","span":{"begin":152,"end":175},"obj":"Protein"},{"id":"T4277","span":{"begin":177,"end":181},"obj":"Protein"},{"id":"T4278","span":{"begin":192,"end":205},"obj":"Protein"},{"id":"T4279","span":{"begin":207,"end":211},"obj":"Protein"},{"id":"T4280","span":{"begin":4,"end":9},"obj":"Binding"},{"id":"T4281","span":{"begin":4,"end":9},"obj":"Binding"},{"id":"T4282","span":{"begin":4,"end":9},"obj":"Binding"},{"id":"T4283","span":{"begin":4,"end":9},"obj":"Binding"},{"id":"T4284","span":{"begin":4,"end":9},"obj":"Binding"},{"id":"T4285","span":{"begin":4,"end":9},"obj":"Binding"},{"id":"T4286","span":{"begin":4,"end":9},"obj":"Binding"}],"relations":[{"id":"R3867","pred":"themeOf","subj":"T4275","obj":"T4280"},{"id":"R3868","pred":"themeOf","subj":"T4275","obj":"T4281"},{"id":"R3869","pred":"themeOf","subj":"T4275","obj":"T4282"},{"id":"R3870","pred":"themeOf","subj":"T4275","obj":"T4283"},{"id":"R3871","pred":"themeOf","subj":"T4275","obj":"T4284"},{"id":"R3872","pred":"themeOf","subj":"T4275","obj":"T4285"},{"id":"R3873","pred":"themeOf","subj":"T4275","obj":"T4286"},{"id":"R3874","pred":"themeOf","subj":"T4276","obj":"T4281"},{"id":"R3875","pred":"themeOf","subj":"T4277","obj":"T4282"},{"id":"R3876","pred":"themeOf","subj":"T4277","obj":"T4285"},{"id":"R3877","pred":"themeOf","subj":"T4277","obj":"T4286"},{"id":"R3878","pred":"themeOf","subj":"T4278","obj":"T4283"},{"id":"R3879","pred":"themeOf","subj":"T4278","obj":"T4285"},{"id":"R3880","pred":"themeOf","subj":"T4279","obj":"T4284"},{"id":"R3883","pred":"themeOf","subj":"T4279","obj":"T4286"}],"text":"Tat binds to RNA stem-loop structures generated by the 5′ end of target transcripts, including the HIV-1 transactivation-responsive element (TAR) (32), tumor necrosis factor β (TNFβ) (33) and interleukin-6 (IL-6) (34) to activate gene transcription."}

    test2

    {"project":"test2","denotations":[{"id":"T1193","span":{"begin":0,"end":3},"obj":"Protein"},{"id":"T1194","span":{"begin":4,"end":9},"obj":"Binding"},{"id":"T1195","span":{"begin":152,"end":175},"obj":"Protein"},{"id":"T1196","span":{"begin":177,"end":181},"obj":"Protein"},{"id":"T1197","span":{"begin":192,"end":205},"obj":"Protein"},{"id":"T1198","span":{"begin":207,"end":211},"obj":"Protein"}],"relations":[{"id":"R1019","pred":"themeOf","subj":"T1193","obj":"T1194"},{"id":"R1020","pred":"equivalentTo","subj":"T1196","obj":"T1195"},{"id":"R1021","pred":"equivalentTo","subj":"T1198","obj":"T1197"}],"text":"Tat binds to RNA stem-loop structures generated by the 5′ end of target transcripts, including the HIV-1 transactivation-responsive element (TAR) (32), tumor necrosis factor β (TNFβ) (33) and interleukin-6 (IL-6) (34) to activate gene transcription."}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T1372","span":{"begin":0,"end":3},"obj":"Protein"},{"id":"T1373","span":{"begin":4,"end":9},"obj":"Binding"},{"id":"T1374","span":{"begin":152,"end":175},"obj":"Protein"},{"id":"T1375","span":{"begin":177,"end":181},"obj":"Protein"},{"id":"T1376","span":{"begin":192,"end":205},"obj":"Protein"},{"id":"T1377","span":{"begin":207,"end":211},"obj":"Protein"},{"id":"T1378","span":{"begin":221,"end":229},"obj":"Positive_regulation"},{"id":"T1379","span":{"begin":221,"end":229},"obj":"Positive_regulation"},{"id":"T1380","span":{"begin":235,"end":248},"obj":"Transcription"},{"id":"T1381","span":{"begin":235,"end":248},"obj":"Transcription"}],"relations":[{"id":"R1231","pred":"themeOf","subj":"T1372","obj":"T1373"},{"id":"R1232","pred":"causeOf","subj":"T1373","obj":"T1379"},{"id":"R1233","pred":"causeOf","subj":"T1373","obj":"T1378"},{"id":"R1234","pred":"themeOf","subj":"T1374","obj":"T1380"},{"id":"R1235","pred":"equivalentTo","subj":"T1375","obj":"T1374"},{"id":"R1236","pred":"themeOf","subj":"T1376","obj":"T1381"},{"id":"R1237","pred":"equivalentTo","subj":"T1377","obj":"T1376"},{"id":"R1238","pred":"themeOf","subj":"T1380","obj":"T1379"},{"id":"R1239","pred":"themeOf","subj":"T1381","obj":"T1378"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Tat binds to RNA stem-loop structures generated by the 5′ end of target transcripts, including the HIV-1 transactivation-responsive element (TAR) (32), tumor necrosis factor β (TNFβ) (33) and interleukin-6 (IL-6) (34) to activate gene transcription."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T2279","span":{"begin":0,"end":3},"obj":"P04608"},{"id":"T2280","span":{"begin":0,"end":3},"obj":"P04610"},{"id":"T2281","span":{"begin":0,"end":3},"obj":"P04605"},{"id":"T2282","span":{"begin":0,"end":3},"obj":"Q8UMQ1"},{"id":"T2283","span":{"begin":152,"end":173},"obj":"P01375"},{"id":"T2284","span":{"begin":192,"end":205},"obj":"P05231"},{"id":"T2285","span":{"begin":207,"end":211},"obj":"P05231"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Tat binds to RNA stem-loop structures generated by the 5′ end of target transcripts, including the HIV-1 transactivation-responsive element (TAR) (32), tumor necrosis factor β (TNFβ) (33) and interleukin-6 (IL-6) (34) to activate gene transcription."}