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PMC:3333881 / 40324-40512 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T20041 0-4 NNP denotes Soon
T20042 5-10 IN denotes after
T20043 11-14 DT denotes the
T20044 15-19 NN denotes shut
T20045 20-23 RP denotes off
T20046 24-26 IN denotes of
T20047 27-30 NN denotes IKK
T20048 31-39 NN denotes activity
T20049 40-43 CC denotes and
T20050 44-47 JJ denotes new
T20051 48-57 NN denotes synthesis
T20052 58-60 IN denotes of
T20053 61-66 NN denotes IκB-α
T20054 66-67 -COMMA- denotes ,
T20055 68-71 DT denotes the
T20056 72-77 NN denotes NF-κB
T20057 78-86 NN denotes activity
T20058 87-90 VB denotes was
T20059 91-95 VB denotes kept
T20060 96-104 JJ denotes elevated
T20061 105-107 IN denotes in
T20062 108-111 DT denotes the
T20063 112-120 NN denotes presence
T20064 121-123 IN denotes of
T20065 124-127 NN denotes Tat
T20066 127-128 -COMMA- denotes ,
T20067 129-134 IN denotes while
T20068 135-137 PRP denotes it
T20069 138-141 VB denotes was
T20070 142-146 RB denotes down
T20071 147-156 VB denotes regulated
T20072 157-161 IN denotes upon
T20073 162-171 NN denotes silencing
T20074 172-174 IN denotes of
T20075 175-178 DT denotes the
T20076 179-182 NN denotes Tat
T20077 183-187 NN denotes gene
R15995 T20044 T20043 arg1Of shut,the
R15996 T20044 T20046 arg1Of shut,of
R15997 T20044 T20052 arg1Of shut,of
R15998 T20044 T20058 arg1Of shut,was
R15999 T20044 T20059 arg2Of shut,kept
R16000 T20044 T20060 arg1Of shut,elevated
R16001 T20046 T20045 arg1Of of,off
R16002 T20048 T20047 arg1Of activity,IKK
R16003 T20048 T20049 arg1Of activity,and
R16004 T20049 T20046 arg2Of and,of
R16005 T20051 T20049 arg2Of synthesis,and
R16006 T20051 T20050 arg1Of synthesis,new
R16007 T20053 T20052 arg2Of IκB-α,of
R16008 T20053 T20054 arg1Of IκB-α,","
R16009 T20057 T20054 arg2Of activity,","
R16010 T20057 T20055 arg1Of activity,the
R16011 T20057 T20056 arg1Of activity,NF-κB
R16012 T20059 T20042 arg2Of kept,after
R16013 T20059 T20058 arg2Of kept,was
R16014 T20059 T20061 arg1Of kept,in
R16015 T20059 T20066 arg1Of kept,","
R16016 T20059 T20067 arg1Of kept,while
R16017 T20060 T20059 arg3Of elevated,kept
R16018 T20063 T20061 arg2Of presence,in
R16019 T20063 T20062 arg1Of presence,the
R16020 T20063 T20064 arg1Of presence,of
R16021 T20065 T20064 arg2Of Tat,of
R16022 T20068 T20069 arg1Of it,was
R16023 T20068 T20071 arg2Of it,regulated
R16024 T20071 T20067 arg2Of regulated,while
R16025 T20071 T20069 arg2Of regulated,was
R16026 T20071 T20070 arg1Of regulated,down
R16027 T20071 T20072 arg1Of regulated,upon
R16028 T20073 T20072 arg2Of silencing,upon
R16029 T20073 T20074 arg1Of silencing,of
R16030 T20077 T20074 arg2Of gene,of
R16031 T20077 T20075 arg1Of gene,the
R16032 T20077 T20076 arg1Of gene,Tat

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T21375 0-4 RB denotes Soon
T21376 5-10 IN denotes after
T21377 11-14 DT denotes the
T21378 15-19 VBN denotes shut
T21379 20-23 IN denotes off
T21380 24-26 IN denotes of
T21381 27-30 NNP denotes IKK
T21382 31-39 NN denotes activity
T21383 40-43 CC denotes and
T21384 44-47 JJ denotes new
T21385 48-57 NN denotes synthesis
T21386 58-60 IN denotes of
T21387 61-66 NNP denotes IκB-α
T21388 66-67 , denotes ,
T21389 68-71 DT denotes the
T21390 72-77 NN denotes NF-κB
T21391 78-86 NN denotes activity
T21392 87-90 VBD denotes was
T21393 91-95 VBN denotes kept
T21394 96-104 VBN denotes elevated
T21395 105-107 IN denotes in
T21396 108-111 DT denotes the
T21397 112-120 NN denotes presence
T21398 121-123 IN denotes of
T21399 124-127 NNP denotes Tat
T21400 127-128 , denotes ,
T21401 129-134 IN denotes while
T21402 135-137 PRP denotes it
T21403 138-141 VBD denotes was
T21404 142-146 RB denotes down
T21405 147-156 VBN denotes regulated
T21406 157-161 IN denotes upon
T21407 162-171 VBG denotes silencing
T21408 172-174 IN denotes of
T21409 175-178 DT denotes the
T21410 179-182 NNP denotes Tat
T21411 183-187 NN denotes gene
T21412 187-188 . denotes .
R17066 T21375 T21378 advmod Soon,shut
R17067 T21376 T21378 mark after,shut
R17068 T21377 T21378 det the,shut
R17069 T21378 T21393 advcl shut,kept
R17070 T21379 T21378 prt off,shut
R17071 T21380 T21379 prep of,off
R17072 T21381 T21382 compound IKK,activity
R17073 T21382 T21380 pobj activity,of
R17074 T21383 T21382 cc and,activity
R17075 T21384 T21385 amod new,synthesis
R17076 T21385 T21382 conj synthesis,activity
R17077 T21386 T21385 prep of,synthesis
R17078 T21387 T21386 pobj IκB-α,of
R17079 T21388 T21393 punct ",",kept
R17080 T21389 T21391 det the,activity
R17081 T21390 T21391 compound NF-κB,activity
R17082 T21391 T21393 nsubjpass activity,kept
R17083 T21392 T21393 auxpass was,kept
R17084 T21393 T21393 ROOT kept,kept
R17085 T21394 T21393 xcomp elevated,kept
R17086 T21395 T21394 prep in,elevated
R17087 T21396 T21397 det the,presence
R17088 T21397 T21395 pobj presence,in
R17089 T21398 T21397 prep of,presence
R17090 T21399 T21398 pobj Tat,of
R17091 T21400 T21393 punct ",",kept
R17092 T21401 T21403 mark while,was
R17093 T21402 T21403 nsubj it,was
R17094 T21403 T21405 auxpass was,regulated
R17095 T21404 T21405 advmod down,regulated
R17096 T21405 T21393 advcl regulated,kept
R17097 T21406 T21405 prep upon,regulated
R17098 T21407 T21406 pcomp silencing,upon
R17099 T21408 T21407 prep of,silencing
R17100 T21409 T21411 det the,gene
R17101 T21410 T21411 compound Tat,gene
R17102 T21411 T21408 pobj gene,of
R17103 T21412 T21393 punct .,kept

GO-BP

Id Subject Object Predicate Lexical cue
T22342 27-30 http://purl.obolibrary.org/obo/GO_0008384 denotes IKK
T22346 48-57 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis

GO-MF

Id Subject Object Predicate Lexical cue
T22365 27-30 http://purl.obolibrary.org/obo/GO_0008384 denotes IKK

sentences

Id Subject Object Predicate Lexical cue
T238 0-188 Sentence denotes Soon after the shut off of IKK activity and new synthesis of IκB-α, the NF-κB activity was kept elevated in the presence of Tat, while it was down regulated upon silencing of the Tat gene.

events-check-again

Id Subject Object Predicate Lexical cue
T23405 48-57 Gene_expression denotes synthesis
T23406 61-66 Protein denotes IκB-α
T23407 124-127 Protein denotes Tat
T23408 162-171 Negative_regulation denotes silencing
T23409 179-182 Protein denotes Tat
R18705 T23406 T23405 themeOf IκB-α,synthesis
R18707 T23409 T23408 themeOf Tat,silencing

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T23641 27-30 Protein denotes IKK
T23642 61-66 Protein denotes IκB-α
T23643 72-77 Protein denotes NF-κB
T23644 124-127 Protein denotes Tat
T23645 179-187 Protein denotes Tat gene
T23646 48-57 Gene_expression denotes synthesis
T23647 48-57 Gene_expression denotes synthesis
T23648 96-104 Positive_regulation denotes elevated
T23649 162-171 Negative_regulation denotes silencing
R18923 T23641 T23646 themeOf IKK,synthesis
R18924 T23642 T23647 themeOf IκB-α,synthesis
R18925 T23643 T23648 themeOf NF-κB,elevated
R18928 T23645 T23649 themeOf Tat gene,silencing

test2

Id Subject Object Predicate Lexical cue Speculation
T19477 48-57 Gene_expression denotes synthesis
T19478 61-66 Protein denotes IκB-α
T19479 96-104 Positive_regulation denotes elevated
T19480 124-127 Protein denotes Tat
T19481 142-156 Negative_regulation denotes down regulated
T19482 162-171 Negative_regulation denotes silencing
T19483 179-182 Protein denotes Tat true
R15560 T19477 T19479 themeOf synthesis,elevated
R15561 T19478 T19477 themeOf IκB-α,synthesis
R15562 T19480 T19479 causeOf Tat,elevated
R15563 T19482 T19481 causeOf silencing,down regulated
R15564 T19483 T19482 themeOf Tat,silencing

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T19679 48-57 Gene_expression denotes synthesis
T19680 61-66 Protein denotes IκB-α
T19681 124-127 Protein denotes Tat
T19682 162-171 Negative_regulation denotes silencing
T19683 179-182 Protein denotes Tat
R15703 T19680 T19679 themeOf IκB-α,synthesis
R15704 T19683 T19682 themeOf Tat,silencing

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T20993 124-127 P04608 denotes Tat
T20994 124-127 Q8UMQ1 denotes Tat
T20995 124-127 P04610 denotes Tat
T20996 124-127 P04605 denotes Tat
T20997 179-182 P04610 denotes Tat
T20998 179-182 P04608 denotes Tat
T20999 179-182 Q8UMQ1 denotes Tat
T21000 179-182 P04605 denotes Tat